Ekaterina Buyko

19 papers A* 1B 7Misc 2Journal 4Unranked 5
YearRankTypeTitle / Venue / Authors
2012 Misc conf
Active Learning-Based Corpus Annotation - The PathoJen Experience.
AMIA
Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler
2012 B conf
Iterative Refinement and Quality Checking of Annotation Guidelines - How to Deal Effectively with Semantically Sloppy Named Entity Types, such as Pathological Phenomena.
LREC
Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler, Jenny Traumüller, Susann Schröder, Kerstin Hornbostel
2012 Misc conf
The Extraction of Pharmacogenetic and Pharmacogenomic Relations - A Case Study Using PharmGKB.
Pacific Symposium on Biocomputing
Ekaterina Buyko, Elena Beisswanger, Udo Hahn
2011 J jnl
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.
J. Biomed. Semant.
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2011 — conf
Generating Semantics for the Life Sciences via Text Analytics.
ICSC
Ekaterina Buyko, Udo Hahn
2011 J jnl
Syntactic Simplification and Semantic Enrichment - Trimming Dependency Graphs for Event Extraction.
Comput. Intell.
Ekaterina Buyko, Erik Faessler, Joachim Wermter, Udo Hahn
2011 B conf
Towards Automatic Pathway Generation from Biological Full-Text Publications.
IDA
Ekaterina Buyko, Jörg Linde, Steffen Priebe, Udo Hahn
2011 J jnl
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinform.
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2010 — conf
Assessment of NER solutions against the first and second CALBC silver standard corpus.
Semantic Mining in Biomedicine
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2010 J jnl
Calbc Silver Standard Corpus.
J. Bioinform. Comput. Biol.
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Elena Beisswanger, Udo Hahn
2010 A* conf
Evaluating the Impact of Alternative Dependency Graph Encodings on Solving Event Extraction Tasks.
EMNLP
Ekaterina Buyko, Udo Hahn
2010 B conf
The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers.
LREC
Dietrich Rebholz-Schuhmann, Antonio José Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Katrin Tomanek, Elena Beisswanger, Udo Hahn
2010 B conf
The GeneReg Corpus for Gene Expression Regulation Events - An Overview of the Corpus and its In-Domain and Out-of-Domain Interoperability.
LREC
Ekaterina Buyko, Elena Beisswanger, Udo Hahn
2009 — conf
Event Extraction from Trimmed Dependency Graphs.
BioNLP@HLT-NAACL (Shared Task)
Ekaterina Buyko, Erik Faessler, Joachim Wermter, Udo Hahn
2009 — conf
How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions.
BioNLP@HLT-NAACL
Udo Hahn, Katrin Tomanek, Ekaterina Buyko, Jung-Jae Kim, Dietrich Rebholz-Schuhmann
2008 B conf
Are Morpho-Syntactic Features More Predictive for the Resolution of Noun Phrase Coordination Ambiguity than Lexico-Semantic Similarity Scores?
COLING
Ekaterina Buyko, Udo Hahn
2008 B conf
Ontology-Based Interface Specifications for a NLP Pipeline Architecture.
LREC
Ekaterina Buyko, Christian Chiarcos, Antonio Pareja-Lora
2008 B conf
Semantic Annotations for Biology: a Corpus Development Initiative at the Jena University Language & Information Engineering (JULIE) Lab.
LREC
Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Michael Poprat, Katrin Tomanek, Joachim Wermter
2007 — conf
An Annotation Type System for a Data-Driven NLP Pipeline.
LAW@ACL
Udo Hahn, Ekaterina Buyko, Katrin Tomanek, Scott Piao, John McNaught, Yoshimasa Tsuruoka, Sophia Ananiadou