Edward R. Dougherty

461 papers A* 6A 2B 4C 22Misc 15Journal 308Unranked 92

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A State-Space Approach to Nonstationary Discriminant Analysis. CoRR Shuilian Xie, Mahdi Imani, Edward R. Dougherty, Ulisses M. Braga-Neto
2024	J	`jnl`	Bayesian Proper Orthogonal Decomposition for Learnable Reduced-Order Models With Uncertainty Quantification. IEEE Trans. Artif. Intell. Shahin Boluki, Siamak Zamani Dadaneh, Edward R. Dougherty, Xiaoning Qian
2024	A	`conf`	Multi-fidelity Bayesian Optimization with Multiple Information Sources of Input-dependent Fidelity. UAI Mingzhou Fan, Byung-Jun Yoon, Edward R. Dougherty, Nathan M. Urban, Francis J. Alexander, Raymundo Arróyave, Xiaoning Qian
2024	J	`jnl`	Optimal Bayesian Regression With Vector Autoregressive Data Dependency. IEEE Trans. Signal Process. Samira Reihanian, Edward R. Dougherty, Amin Zollanvari
2024	J	`jnl`	Pathway-based analyses of gene expression profiles at low doses of ionizing radiation. Frontiers Bioinform. Xihaier Luo, Seyednami Niyakan, Patrick R. Johnstone, Sean McCorkle, Gilchan Park, Vanessa López-Marrero, Shinjae Yoo, Edward R. Dougherty, Xiaoning Qian, Francis J. Alexander, Shantenu Jha, Byung-Jun Yoon
2023	J	`jnl`	Comprehensive analysis of gene expression profiles to radiation exposure reveals molecular signatures of low-dose radiation response. CoRR Xihaier Luo, Sean McCorkle, Gilchan Park, Vanessa López-Marrero, Shinjae Yoo, Edward R. Dougherty, Xiaoning Qian, Francis J. Alexander, Byung-Jun Yoon
2023	J	`jnl`	Knowledge-driven learning, optimization, and experimental design under uncertainty for materials discovery. Patterns Xiaoning Qian, Byung-Jun Yoon, Raymundo Arróyave, Xiaofeng Qian, Edward R. Dougherty
2023	J	`jnl`	Optimal decision-making in high-throughput virtual screening pipelines. Patterns Hyun-Myung Woo, Xiaoning Qian, Li Tan, Shantenu Jha, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon
2023	J	`jnl`	Sensitivity Analysis of Genome-Scale Metabolic Flux Prediction. J. Comput. Biol. Puhua Niu, Maria J. Soto, Shuai Huang, Byung-Jun Yoon, Edward R. Dougherty, Francis J. Alexander, Ian Blaby, Xiaoning Qian
2022	Misc	`conf`	Adaptive Group Testing with Mismatched Models. ICASSP Mingzhou Fan, Byung-Jun Yoon, Francis J. Alexander, Edward R. Dougherty, Xiaoning Qian
2022	—	`conf`	Comprehensive analysis of gene expression profiles to radiation exposure reveals molecular signatures of low-dose radiation response. BIBM Xihaier Luo, Sean McCorkle, Gilchan Park, Vanessa López-Marrero, Shinjae Yoo, Edward R. Dougherty, Xiaoning Qian, Francis J. Alexander, Byung-Jun Yoon
2022	J	`jnl`	Network Classification Based on Reducibility With Respect to the Stability of Canalizing Power of Genes in a Gene Regulatory Network - A Boolean Network Modeling Perspective. IEEE ACM Trans. Comput. Biol. Bioinform. Eunji Kim, Ivan Ivanov, Edward R. Dougherty
2022	J	`jnl`	Robust importance sampling for error estimation in the context of optimal Bayesian transfer learning. Patterns Omar Maddouri, Xiaoning Qian, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon
2021	A	`conf`	Bayesian Active Learning by Soft Mean Objective Cost of Uncertainty. AISTATS Guang Zhao, Edward R. Dougherty, Byung-Jun Yoon, Francis J. Alexander, Xiaoning Qian
2021	A*	`conf`	Efficient Active Learning for Gaussian Process Classification by Error Reduction. NeurIPS Guang Zhao, Edward R. Dougherty, Byung-Jun Yoon, Francis J. Alexander, Xiaoning Qian
2021	—	`ed.`	IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, Houston, TX, USA, December 9-12, 2021 BIBM Yufei Huang, Lukasz A. Kurgan, Feng Luo, Xiaohua Hu, Yidong Chen, Edward R. Dougherty, Andrzej Kloczkowski, Yaohang Li
2021	J	`jnl`	Optimal Bayesian Transfer Learning for Count Data. IEEE ACM Trans. Comput. Biol. Bioinform. Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty
2021	J	`jnl`	Optimal Bayesian supervised domain adaptation for RNA sequencing data. Bioinform. Shahin Boluki, Xiaoning Qian, Edward R. Dougherty
2021	J	`jnl`	Optimal Decision Making in High-Throughput Virtual Screening Pipelines. CoRR Hyun-Myung Woo, Xiaoning Qian, Li Tan, Shantenu Jha, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon
2021	J	`jnl`	Quantifying the Multi-Objective Cost of Uncertainty. IEEE Access Byung-Jun Yoon, Xiaoning Qian, Edward R. Dougherty
2021	J	`jnl`	Robust Importance Sampling for Error Estimation in the Context of Optimal Bayesian Transfer Learning. CoRR Omar Maddouri, Xiaoning Qian, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon
2021	A*	`conf`	Uncertainty-aware Active Learning for Optimal Bayesian Classifier. ICLR Guang Zhao, Edward R. Dougherty, Byung-Jun Yoon, Francis J. Alexander, Xiaoning Qian
2020	J	`jnl`	Boolean Kalman filter and smoother under model uncertainty. Autom. Mahdi Imani, Edward R. Dougherty, Ulisses M. Braga-Neto
2020	J	`jnl`	Machine Learning Requires Probability and Statistics [Perspectives]. IEEE Signal Process. Mag. Ulisses M. Braga-Neto, Edward R. Dougherty
2020	J	`jnl`	Model-Based Robust Filtering and Experimental Design for Stochastic Differential Equation Systems. IEEE Trans. Signal Process. Guang Zhao, Xiaoning Qian, Byung-Jun Yoon, Francis J. Alexander, Edward R. Dougherty
2020	J	`jnl`	Quantifying the multi-objective cost of uncertainty. CoRR Byung-Jun Yoon, Xiaoning Qian, Edward R. Dougherty
2019	J	`jnl`	Classification of Single-Cell Gene Expression Trajectories from Incomplete and Noisy Data. IEEE ACM Trans. Comput. Biol. Bioinform. Alireza Karbalayghareh, Ulisses M. Braga-Neto, Edward R. Dougherty
2019	J	`jnl`	Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification. IEEE ACM Trans. Comput. Biol. Bioinform. Shahin Boluki, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty
2019	J	`jnl`	Experimental Design via Generalized Mean Objective Cost of Uncertainty. IEEE Access Shahin Boluki, Xiaoning Qian, Edward R. Dougherty
2019	J	`jnl`	Optimal Bayesian Classification With Vector Autoregressive Data Dependency. IEEE Trans. Signal Process. Amin Zollanvari, Edward R. Dougherty
2019	J	`jnl`	Optimal Clustering with Missing Values. CoRR Shahin Boluki, Siamak Zamani Dadaneh, Xiaoning Qian, Edward R. Dougherty
2019	J	`jnl`	Optimal clustering with missing values. BMC Bioinform. Shahin Boluki, Siamak Zamani Dadaneh, Xiaoning Qian, Edward R. Dougherty
2019	J	`jnl`	Quantifying the notions of canalizing and master genes in a gene regulatory network - a Boolean network modeling perspective. Bioinform. Eunji Kim, Ivan Ivanov, Edward R. Dougherty
2018	J	`jnl`	A Bayesian robust Kalman smoothing framework for state-space models with uncertain noise statistics. EURASIP J. Adv. Signal Process. Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty
2018	J	`jnl`	A fast Branch-and-Bound algorithm for U-curve feature selection. Pattern Recognit. Esmaeil Atashpaz-Gargari, Marcelo da Silva Reis, Ulisses M. Braga-Neto, Junior Barrera, Edward R. Dougherty
2018	J	`jnl`	Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification. IEEE ACM Trans. Comput. Biol. Bioinform. Jason M. Knight, Ivan Ivanov, Karen Triff, Robert S. Chapkin, Edward R. Dougherty
2018	J	`jnl`	Intrinsically Bayesian robust Karhunen-Loève compression. Signal Process. Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty
2018	J	`jnl`	Optimal Bayesian Classification With Missing Values. IEEE Trans. Signal Process. Siamak Zamani Dadaneh, Edward R. Dougherty, Xiaoning Qian
2018	J	`jnl`	Optimal Bayesian Kalman Filtering With Prior Update. IEEE Trans. Signal Process. Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty
2018	J	`jnl`	Optimal Bayesian Transfer Learning. CoRR Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty
2018	J	`jnl`	Optimal Bayesian Transfer Learning. IEEE Trans. Signal Process. Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty
2018	J	`jnl`	Optimal Bayesian Transfer Regression. IEEE Signal Process. Lett. Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty
2018	J	`jnl`	Optimal Clustering under Uncertainty. CoRR Lori A. Dalton, Marco E. Benalcázar, Edward R. Dougherty
2018	—	`conf`	Optimal Clustering with Missing Values. BCB Shahin Boluki, Siamak Zamani Dadaneh, Xiaoning Qian, Edward R. Dougherty
2018	J	`jnl`	Optimal Objective-Based Experimental Design for Uncertain Dynamical Gene Networks with Experimental Error. IEEE ACM Trans. Comput. Biol. Bioinform. Daniel N. Mohsenizadeh, Roozbeh Dehghannasiri, Edward R. Dougherty
2018	Misc	`conf`	Robust Smoothing for State-Space Models with Unknown Noise Statistics. ACSSC Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty
2018	—	`conf`	Scalable Optimal Bayesian Classification of Single-Cell Trajectories under Regulatory Model Uncertainty. BCB Ehsan Hajiramezanali, Mahdi Imani, Ulisses M. Braga-Neto, Xiaoning Qian, Edward R. Dougherty
2018	J	`jnl`	Sequential Experimental Design for Optimal Structural Intervention in Gene Regulatory Networks Based on the Mean Objective Cost of Uncertainty. CoRR Mahdi Imani, Roozbeh Dehghannasiri, Ulisses M. Braga-Neto, Edward R. Dougherty
2018	J	`jnl`	Sequential Therapeutic Response Modeling for Tumor Treatment Using Computational Hybrid Control Systems Approach. IEEE Trans. Biomed. Eng. Wasiu Opeyemi Oduola, Xiangfang Li, Chang Duan, Lijun Qian, Edward R. Dougherty
2017	Misc	`conf`	An objective-based experimental design framework for signal processing in the context of canonical expansions. ACSSC Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty
2017	Misc	`conf`	Bayesian Kalman filtering in the presence of unknown noise statistics using factor graphs. ACSSC Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty
2017	Misc	`conf`	Classification of Gaussian trajectories with missing data in Boolean gene regulatory networks. ICASSP Alireza Karbalayghareh, Ulisses M. Braga-Neto, Edward R. Dougherty
2017	J	`jnl`	Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors. BMC Bioinform. Shahin Boluki, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty
2017	—	`conf`	Intrinsically Bayesian Robust Classifier for Single-Cell Gene Expression Time Series in Gene Regulatory Networks. BCB Alireza Karbalayghareh, Ulisses M. Braga-Neto, Edward R. Dougherty
2017	Misc	`conf`	Nonstationary linear discriminant analysis. ACSSC Shuilian Xie, Mahdi Imani, Edward R. Dougherty, Ulisses M. Braga-Neto
2017	J	`jnl`	Optimal experimental design in the context of canonical expansions. IET Signal Process. Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty
2017	J	`jnl`	Review of stochastic hybrid systems with applications in biological systems modeling and analysis. EURASIP J. Bioinform. Syst. Biol. Xiangfang Li, Oluwaseyi Omotere, Lijun Qian, Edward R. Dougherty
2016	Misc	`conf`	A Bayesian framework for robust Kalman filtering under uncertain noise statistics. ACSSC Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Edward R. Dougherty
2016	—	`conf`	Analysis and control of genetic regulatory systems with switched drug inputs. BHI Wasiu Opeyemi Oduola, Xiangfang Li, Chang Duan, Lijun Qian, Fen Wu, Edward R. Dougherty
2016	J	`jnl`	Bayesian Regression With Network Prior: Optimal Bayesian Filtering Perspective. IEEE Trans. Signal Process. Xiaoning Qian, Edward R. Dougherty
2016	J	`jnl`	Incorporating prior knowledge induced from stochastic differential equations in the classification of stochastic observations. EURASIP J. Bioinform. Syst. Biol. Amin Zollanvari, Edward R. Dougherty
2016	—	`conf`	Inference of Nonlinear ODE-Based Gene Regulatory Networks via Intrinsically Bayesian Robust Kalman Filtering. BCB Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Edward R. Dougherty
2016	—	`ch.`	Inference of gene regulatory networks: validation and uncertainty. Big Data over Networks Xiaoning Qian, Byung-Jun Yoon, Edward R. Dougherty
2016	—	`conf`	Model-based study of the Effectiveness of Reporting Lists of Small Feature Sets using RNA-Seq Data. BCB Eunji Kim, Ivan Ivanov, Jianping Hua, Robert S. Chapkin, Edward R. Dougherty
2016	J	`jnl`	Optimal Wiener and homomorphic filtration: Review. Signal Process. Artyom M. Grigoryan, Edward R. Dougherty, Sos S. Agaian
2016	—	`conf`	Optimal dynamics uncertainty reduction in gene networks in the presence of experimental error. BHI Daniel N. Mohsenizadeh, Roozbeh Dehghannasiri, Edward R. Dougherty
2016	—	`conf`	Optimal experimental design in canonical expansions with applications to signal compression. GlobalSIP Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty
2015	J	`jnl`	An Optimization-Based Framework for the Transformation of Incomplete Biological Knowledge into a Probabilistic Structure and Its Application to the Utilization of Gene/Protein Signaling Pathways in Discrete Phenotype Classification. IEEE ACM Trans. Comput. Biol. Bioinform. Mohammad Shahrokh Esfahani, Edward R. Dougherty
2015	—	`conf`	An experimental design to reduce dynamics uncertainty in genomic networks. BCB Daniel N. Mohsenizadeh, Roozbeh Dehghannasiri, Edward R. Dougherty
2015	J	`jnl`	Analytic Representation of Bayes Labeling and Bayes Clustering Operators for Random Labeled Point Processes. IEEE Trans. Signal Process. Lori A. Dalton, Marco Benalcázar, Marcel Brun, Edward R. Dougherty
2015	J	`jnl`	Discrete optimal Bayesian classification with error-conditioned sequential sampling. Pattern Recognit. Ariana Broumand, Mohammad Shahrokh Esfahani, Byung-Jun Yoon, Edward R. Dougherty
2015	J	`jnl`	Dynamical modeling of uncertain interaction-based genomic networks. BMC Bioinform. Daniel N. Mohsenizadeh, Jianping Hua, Michael L. Bittner, Edward R. Dougherty
2015	J	`jnl`	Efficient experimental design for uncertainty reduction in gene regulatory networks. BMC Bioinform. Roozbeh Dehghannasiri, Byung-Jun Yoon, Edward R. Dougherty
2015	J	`jnl`	Erratum to: Efficient experimental design for uncertainty reduction in gene regulatory networks. BMC Bioinform. Roozbeh Dehghannasiri, Byung-Jun Yoon, Edward R. Dougherty
2015	J	`jnl`	Generalized Consistent Error Estimator of Linear Discriminant Analysis. IEEE Trans. Signal Process. Amin Zollanvari, Edward R. Dougherty
2015	J	`jnl`	Optimal Experimental Design for Gene Regulatory Networks in the Presence of Uncertainty. IEEE ACM Trans. Comput. Biol. Bioinform. Roozbeh Dehghannasiri, Byung-Jun Yoon, Edward R. Dougherty
2015	Misc	`conf`	Small data is the problem. ACSSC Edward R. Dougherty, Lori A. Dalton, Francis J. Alexander
2014	J	`jnl`	A comparison study of optimal and suboptimal intervention policies for gene regulatory networks in the presence of uncertainty. EURASIP J. Bioinform. Syst. Biol. Mohammadmahdi R. Yousefi, Edward R. Dougherty
2014	—	`conf`	Computationally efficient experimental design strategy for reducing gene network uncertainty. GlobalSIP Roozbeh Dehghannasiri, Byung-Jun Yoon, Edward R. Dougherty
2014	J	`jnl`	Cross-validation under separate sampling: strong bias and how to correct it. Bioinform. Ulisses M. Braga-Neto, Amin Zollanvari, Edward R. Dougherty
2014	J	`jnl`	Effect of separate sampling on classification accuracy. Bioinform. Mohammad Shahrokh Esfahani, Edward R. Dougherty
2014	J	`jnl`	Incorporation of Biological PathwayKnowledge in the Construction of Priorsfor Optimal Bayesian Classification. IEEE ACM Trans. Comput. Biol. Bioinform. Mohammad Shahrokh Esfahani, Edward R. Dougherty
2014	J	`jnl`	Intrinsically Optimal Bayesian Robust Filtering. IEEE Trans. Signal Process. Lori A. Dalton, Edward R. Dougherty
2014	J	`jnl`	Learning restricted Boolean network model by time-series data. EURASIP J. Bioinform. Syst. Biol. Hongjia Ouyang, Jie Fang, Liangzhong Shen, Edward R. Dougherty, Wenbin Liu
2014	J	`jnl`	MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification. BMC Bioinform. Jason M. Knight, Ivan Ivanov, Edward R. Dougherty
2014	J	`jnl`	Misinformation Propagation in the Age of Twitter. Computer Fang Jin, Wei Wang, Liang Zhao, Edward R. Dougherty, Yang Cao, Chang-Tien Lu, Naren Ramakrishnan
2014	J	`jnl`	Modeling and systematic analysis of biomarker validation using selected reaction monitoring. EURASIP J. Bioinform. Syst. Biol. Esmaeil Atashpaz-Gargari, Ulisses M. Braga-Neto, Edward R. Dougherty
2014	A*	`conf`	Modeling mass protest adoption in social network communities using geometric brownian motion. KDD Fang Jin, Rupinder Paul Khandpur, Nathan Self, Edward R. Dougherty, Sheng Guo, Feng Chen, B. Aditya Prakash, Naren Ramakrishnan
2014	J	`jnl`	Moments and root-mean-square error of the Bayesian MMSE estimator of classification error in the Gaussian model. Pattern Recognit. Amin Zollanvari, Edward R. Dougherty
2014	—	`conf`	Sensitivity analysis for drug effect study: An NF-κB pathway example. GlobalSIP Xiangfang Lindsey Li, Sunday Ogedengbe, Lijun Qian, Edward R. Dougherty
2014	J	`jnl`	Unbiased bootstrap error estimation for linear discriminant analysis. EURASIP J. Bioinform. Syst. Biol. Thang T. Vu, Chao Sima, Ulisses M. Braga-Neto, Edward R. Dougherty
2014	J	`jnl`	Using the minimum description length principle to reduce the rate of false positives of best-fit algorithms. EURASIP J. Bioinform. Syst. Biol. Jie Fang, Hongjia Ouyang, Liangzhong Shen, Edward R. Dougherty, Wenbin Liu
2013	J	`jnl`	Analytical study of performance of linear discriminant analysis in stochastic settings. Pattern Recognit. Amin Zollanvari, Jianping Hua, Edward R. Dougherty
2013	—	`conf`	Application of double asymptotics and random matrix theory in error estimation of regularized linear discriminant analysis. GlobalSIP Amin Zollanvari, Edward R. Dougherty
2013	Misc	`conf`	Bayes clustering operators for known random labeled point processes. ACSSC Lori A. Dalton, Marco Benalcázar, Marcel Brun, Edward R. Dougherty
2013	—	`conf`	Bayesian multivariate Poisson model for RNA-seq classification. GENSiPS Jason M. Knight, Ivan Ivanov, Edward R. Dougherty
2013	Misc	`conf`	Bayesian optimal control of Markovian genetic regulatory networks. ACSSC Mohammadmahdi R. Yousefi, Edward R. Dougherty
2013	J	`jnl`	Classifier design given an uncertainty class of feature distributions via regularized maximum likelihood and the incorporation of biological pathway knowledge in steady-state phenotype classification. Pattern Recognit. Mohammad Shahrokh Esfahani, Jason M. Knight, Amin Zollanvari, Byung-Jun Yoon, Edward R. Dougherty
2013	—	`conf`	Designing experiments for optimal reduction of uncertainty in gene regulatory networks. GENSiPS Roozbeh Dehghannasiri, Byung-Jun Yoon, Edward R. Dougherty
2013	—	`conf`	Drug effect study on proliferation and survival pathways on cell line-based platform: A stochastic hybrid systems approach. GENSiPS Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty
2013	—	`conf`	Effect of mixing probabilities on the bias of cross-validation under separate sampling. GENSiPS Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty
2013	—	`conf`	Effect of separate sampling on classification and the minimax criterion. GENSiPS Mohammad Shahrokh Esfahani, Edward R. Dougherty
2013	—	`conf`	Epidemiological modeling of news and rumors on Twitter. SNAKDD Fang Jin, Edward R. Dougherty, Parang Saraf, Yang Cao, Naren Ramakrishnan
2013	J	`jnl`	Estimating Conditional Probabilities for the Detection of Unfavorable Copy Number Alterations in a Targeted Therapy. IEEE Trans. Biomed. Eng. Fang-Han Hsu, Edward R. Dougherty, Yidong Chen, Erchin Serpedin
2013	—	`conf`	Improved branch-and-bound algorithm for U-curve optimization. GENSiPS Esmaeil Atashpaz-Gargari, Ulisses M. Braga-Neto, Edward R. Dougherty
2013	J	`jnl`	Intervention in gene regulatory networks with maximal phenotype alteration. Bioinform. Mohammadmahdi R. Yousefi, Edward R. Dougherty
2013	J	`jnl`	Modeling the Next Generation Sequencing sample processing pipeline for the purposes of classification. BMC Bioinform. Noushin Ghaffari, Mohammadmahdi R. Yousefi, Charles D. Johnson, Ivan Ivanov, Edward R. Dougherty
2013	J	`jnl`	On the impoverishment of scientific education. EURASIP J. Bioinform. Syst. Biol. Edward R. Dougherty
2013	J	`jnl`	Optimal Intervention in Markovian Gene Regulatory Networks With Random-Length Therapeutic Response to Antitumor Drug. IEEE Trans. Biomed. Eng. Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty
2013	J	`jnl`	Optimal classifiers with minimum expected error within a Bayesian framework - Part I: Discrete and Gaussian models. Pattern Recognit. Lori A. Dalton, Edward R. Dougherty
2013	J	`jnl`	Optimal classifiers with minimum expected error within a Bayesian framework - Part II: Properties and performance analysis. Pattern Recognit. Lori A. Dalton, Edward R. Dougherty
2013	Misc	`conf`	Performance of linear discriminant analysis in stochastic settings. ICASSP Amin Zollanvari, Jianping Hua, Edward R. Dougherty
2013	—	`conf`	Phenotypically constrained Boolean network inference with prescribed steady states. GENSiPS Xiaoning Qian, Edward R. Dougherty
2013	J	`jnl`	Quantifying the Objective Cost of Uncertainty in Complex Dynamical Systems. IEEE Trans. Signal Process. Byung-Jun Yoon, Xiaoning Qian, Edward R. Dougherty
2013	Misc	`conf`	Random matrix theory in pattern classification: An application to error estimation. ACSSC Amin Zollanvari, Edward R. Dougherty
2013	J	`jnl`	Relationship between the accuracy of classifier error estimation and complexity of decision boundary. Pattern Recognit. Esmaeil Atashpaz-Gargari, Chao Sima, Ulisses M. Braga-Neto, Edward R. Dougherty
2013	—	`conf`	Robust identification of molecularly targeted drug effect coefficient using H∞ filter. GlobalSIP Lijun Qian, Xiangfang Li, Edward R. Dougherty
2013	Misc	`conf`	Sample-based prior probability construction using biological pathway knowledge. ACSSC Mohammad Shahrokh Esfahani, Edward R. Dougherty
2013	J	`jnl`	Scientific knowledge is possible with small-sample classification. EURASIP J. Bioinform. Syst. Biol. Edward R. Dougherty, Lori A. Dalton
2013	J	`jnl`	Spectral Analysis on Time-Course Expression Data: Detecting Periodic Genes Using a Real-Valued Iterative Adaptive Approach. Adv. Bioinformatics Kwadwo Agyepong, Fang-Han Hsu, Edward R. Dougherty, Erchin Serpedin
2013	J	`jnl`	The reliability of estimated confidence intervals for classification error rates when only a single sample is available. Pattern Recognit. Blaise Hanczar, Edward R. Dougherty
2012	J	`jnl`	BPDA2d - a 2D global optimization-based Bayesian peptide detection algorithm for liquid chromatograph-mass spectrometry. Bioinform. Youting Sun, Jianqiu Zhang, Ulisses M. Braga-Neto, Edward R. Dougherty
2012	J	`jnl`	Dynamical modeling of drug effect using hybrid systems. EURASIP J. Bioinform. Syst. Biol. Xiangfang Li, Lijun Qian, Edward R. Dougherty
2012	J	`jnl`	Evaluating Dynamic Effects of Copy Number Alterations on Gene Expression Using a Single Transcription Model. IEEE Trans. Biomed. Eng. Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty
2012	J	`jnl`	Exact Sample Conditioned MSE Performance of the Bayesian MMSE Estimator for Classification Error - Part I: Representation. IEEE Trans. Signal Process. Lori A. Dalton, Edward R. Dougherty
2012	J	`jnl`	Exact Sample Conditioned MSE Performance of the Bayesian MMSE Estimator for Classification Error - Part II: Consistency and Performance Analysis. IEEE Trans. Signal Process. Lori A. Dalton, Edward R. Dougherty
2012	J	`jnl`	Exact representation of the second-order moments for resubstitution and leave-one-out error estimation for linear discriminant analysis in the univariate heteroskedastic Gaussian model. Pattern Recognit. Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty
2012	J	`jnl`	Fuzzy Intervention in Biological Phenomena. IEEE ACM Trans. Comput. Biol. Bioinform. Hazem N. Nounou, Mohamed N. Nounou, Nader Meskin, Aniruddha Datta, Edward R. Dougherty
2012	J	`jnl`	Generating Stochastic Gene Regulatory Networks Consistent With Pathway Information and Steady-State Behavior. IEEE Trans. Biomed. Eng. Jason M. Knight, Aniruddha Datta, Edward R. Dougherty
2012	J	`jnl`	Genomic Signal Processing [Life Sciences]. IEEE Signal Process. Mag. Edward R. Dougherty
2012	J	`jnl`	Identifying mechanistic similarities in drug responses. Bioinform. Chen Zhao, Jianping Hua, Michael L. Bittner, Ivan Ivanov, Edward R. Dougherty
2012	J	`jnl`	Intervention in Gene Regulatory Networks via Phenotypically Constrained Control Policies Based on Long-Run Behavior. IEEE ACM Trans. Comput. Biol. Bioinform. Xiaoning Qian, Edward R. Dougherty
2012	J	`jnl`	Multiscale Denoising of Biological Data: A Comparative Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. Mohamed N. Nounou, Hazem N. Nounou, Nader Meskin, Aniruddha Datta, Edward R. Dougherty
2012	—	`conf`	Optimal Bayesian classification and its application to gene regulatory networks. GENSiPS Lori A. Dalton, Edward R. Dougherty
2012	J	`jnl`	Optimal Intervention Strategies for Therapeutic Methods With Fixed-Length Duration of Drug Effectiveness. IEEE Trans. Signal Process. Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty
2012	—	`conf`	Optimal cancer therapy based on a tumor growth inhibition model. SSP Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty
2012	—	`conf`	Optimal classifiers within a Bayesian framework. SSP Lori A. Dalton, Edward R. Dougherty
2012	J	`jnl`	Optimal mean-square-error calibration of classifier error estimators under Bayesian models. Pattern Recognit. Lori A. Dalton, Edward R. Dougherty
2012	—	`conf`	Optimal therapeutic methods with random-length response in probabilistic boolean networks. GENSiPS Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty
2012	C	`conf`	Output-feedback model predictive control of biological phenomena modeled by S-systems. ACC Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty
2012	J	`jnl`	Performance reproducibility index for classification. Bioinform. Mohammadmahdi R. Yousefi, Edward R. Dougherty
2012	J	`jnl`	Stochastic Modeling of the Relationship between Copy Number and Gene Expression Based on Transcriptional Logic. IEEE Trans. Biomed. Eng. Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty
2012	Misc	`conf`	Structural intervention of gene regulatory networks by general rank-k matrix perturbation. ICASSP Xiaoning Qian, Byung-Jun Yoon, Edward R. Dougherty
2011	J	`jnl`	A CoD-based stationary control policy for intervening in large gene regulatory networks. BMC Bioinform. Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty
2011	—	`conf`	A parallel programming framework with Markovian messaging for LC-MS peptide detection. BIBM Workshops Zhenghao Zhang, Youting Sun, Ulisses M. Braga-Neto, Edward R. Dougherty, Jianqiu Zhang
2011	J	`jnl`	Analytic Study of Performance of Error Estimators for Linear Discriminant Analysis. IEEE Trans. Signal Process. Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty
2011	J	`jnl`	Application of the Bayesian MMSE estimator for classification error to gene expression microarray data. Bioinform. Lori A. Dalton, Edward R. Dougherty
2011	—	`conf`	Assessing the efficacy of molecularly targeted agents by using Kalman filter. GENSiPS Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty
2011	—	`conf`	Attractor estimation and model refinement for stochastic regulatory network models. GENSiPS Jason M. Knight, Edward R. Dougherty
2011	J	`jnl`	Bayesian Minimum Mean-Square Error Estimation for Classification Error - Part I: Definition and the Bayesian MMSE Error Estimator for Discrete Classification. IEEE Trans. Signal Process. Lori A. Dalton, Edward R. Dougherty
2011	J	`jnl`	Bayesian Minimum Mean-Square Error Estimation for Classification Error - Part II: Linear Classification of Gaussian Models. IEEE Trans. Signal Process. Lori A. Dalton, Edward R. Dougherty
2011	J	`jnl`	Cancer therapy design based on pathway logic. Bioinform. Ritwik Layek, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2011	J	`jnl`	Characterization of Drug Efficacy Regions Based on Dosage and Frequency Schedules. IEEE Trans. Biomed. Eng. Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty
2011	—	`conf`	Classifier error estimator performance in a Bayesian context. GENSiPS Lori A. Dalton, Edward R. Dougherty
2011	—	`conf`	Combination therapy design for cancer: A digital systems approach. CDC/ECC Ritwik Layek, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2011	—	`conf`	Designing enhanced classifiers using prior process knowledge: Regularized maximum-likelihood. GENSiPS Mohammad Shahrokh Esfahani, Amin Zollanvari, Byung-Jun Yoon, Edward R. Dougherty
2011	—	`conf`	Exact MSE performance of the Bayesian MMSE estimator for classification error. ACSCC Lori A. Dalton, Edward R. Dougherty
2011	J	`jnl`	High-dimensional bolstered error estimation. Bioinform. Chao Sima, Ulisses M. Braga-Neto, Edward R. Dougherty
2011	—	`conf`	Identifying genes associated with chemotherapy response in ovarian carcinomas based on DNA copy number and expression profiles. GENSiPS Fang-Han Hsu, Erchin Serpedin, Tzu-Hung Hsiao, Alexander J. R. Bishop, Edward R. Dougherty, Yidong Chen
2011	J	`jnl`	Intervention in Biological Phenomena Modeled by S-Systems. IEEE Trans. Biomed. Eng. Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty
2011	C	`conf`	Intervention in biological phenomena modeled by S-systems: A model predictive control approach. ACC Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty
2011	—	`conf`	Modeling and systematic analysis of LC-MS proteomics pipeline. GENSiPS Youting Sun, Ulisses M. Braga-Neto, Edward R. Dougherty
2011	—	`conf`	Modeling cyclic and acyclic therapeutic methods with persistent intervention effect in probabilistic Boolean networks. GENSiPS Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty
2011	—	`conf`	Multiple reaction monitoring: Modeling and systematic analysis. GENSiPS Esmaeil Atashpaz-Gargari, Ulisses M. Braga-Neto, Edward R. Dougherty
2011	J	`jnl`	Multiple-rule bias in the comparison of classification rules. Bioinform. Mohammadmahdi R. Yousefi, Jianping Hua, Edward R. Dougherty
2011	—	`conf`	Optimal intervention strategies for cyclic therapeutic methods with fixed-length duration of effect. ACSCC Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty
2011	—	`conf`	Parameter estimation of biological phenomena modeled by S-systems: An Extended Kalman filter approach. CDC/ECC Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty
2011	—	`conf`	Pathway analysis in the context of Bayesian networks - mathematical modeling of master and canalizing genes. GENSiPS Chen Zhao, Ivan Ivanov, Michael L. Bittner, Edward R. Dougherty
2011	J	`jnl`	Probabilistic reconstruction of the tumor progression process in gene regulatory networks in the presence of uncertainty. BMC Bioinform. Mohammad Shahrokh Esfahani, Byung-Jun Yoon, Edward R. Dougherty
2011	—	`conf`	Relationship between the accuracy of classifier error estimation and distribution complexity. GENSiPS Esmaeil Atashpaz-Gargari, Chao Sima, Ulisses M. Braga-Neto, Edward R. Dougherty
2011	—	`conf`	Stochastic modeling of dynamic effects of copy number alterations upon gene expression levels. GENSiPS Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty
2011	—	`conf`	Uncertainty-based essentiality in gene regulatory networks. GENSiPS Xiaoning Qian, Byung-Jun Yoon, Edward R. Dougherty
2011	J	`jnl`	Validation of gene regulatory networks: scientific and inferential. Briefings Bioinform. Edward R. Dougherty
2010	J	`jnl`	A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. Bioinform. Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty
2010	—	`conf`	A comparative study on sensitivities of Boolean networks. GENSiPS Xiaoning Qian, Edward R. Dougherty
2010	J	`jnl`	BPDA - A Bayesian peptide detection algorithm for mass spectrometry. BMC Bioinform. Youting Sun, Jianqiu Zhang, Ulisses M. Braga-Neto, Edward R. Dougherty
2010	—	`conf`	Bayesian MMSE estimation of classification error and performance on real genomic data. GENSiPS Lori A. Dalton, Edward R. Dougherty
2010	—	`conf`	Conditioning-based model for the regulatory activities of microRNAs in specific dietary contexts. GENSiPS Chen Zhao, Ivan Ivanov, Manasvi Shah, Laurie A. Davidson, Robert S. Chapkin, Edward R. Dougherty
2010	—	`conf`	Effects of partial reporting of classification results. GENSiPS Mohammadmahdi R. Yousefi, Jianping Hua, Chao Sima, Edward R. Dougherty
2010	J	`jnl`	Exact correlation between actual and estimated errors in discrete classification. Pattern Recognit. Lett. Ulisses M. Braga-Neto, Edward R. Dougherty
2010	—	`conf`	From biological pathways to regulatory networks. CDC Ritwik Layek, Aniruddha Datta, Edward R. Dougherty
2010	J	`jnl`	Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network. BMC Bioinform. Junjie Su, Byung-Jun Yoon, Edward R. Dougherty
2010	J	`jnl`	Joint sampling distribution between actual and estimated classification errors for linear discriminant analysis. IEEE Trans. Inf. Theory Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty
2010	C	`conf`	Modeling treatment and drug effects at the molecular level using hybrid system theory. CIBCB Xiangfang Li, Lijun Qian, Edward R. Dougherty
2010	—	`book`	Probabilistic Boolean Networks - The Modeling and Control of Gene Regulatory Networks. Ilya Shmulevich, Edward R. Dougherty
2010	—	`conf`	RMS bounds and sample size considerations for error estimation in linear discriminant analysis. GENSiPS Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty
2010	J	`jnl`	Reporting bias when using real data sets to analyze classification performance. Bioinform. Mohammadmahdi R. Yousefi, Jianping Hua, Chao Sima, Edward R. Dougherty
2010	J	`jnl`	Selection policy-induced reduction mappings for Boolean networks. IEEE Trans. Signal Process. Ivan Ivanov, Plamen Simeonov, Noushin Ghaffari, Xiaoning Qian, Edward R. Dougherty
2010	J	`jnl`	Small-sample precision of ROC-related estimates. Bioinform. Blaise Hanczar, Jianping Hua, Chao Sima, John N. Weinstein, Michael L. Bittner, Edward R. Dougherty
2010	J	`jnl`	State reduction for network intervention in probabilistic Boolean networks. Bioinform. Xiaoning Qian, Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty
2010	J	`jnl`	Stationary and structural control in gene regulatory networks: basic concepts. Int. J. Syst. Sci. Edward R. Dougherty, Ranadip Pal, Xiaoning Qian, Michael L. Bittner, Aniruddha Datta
2009	—	`conf`	A CoD based reduction algorithm for Boolean and probabilistic Boolean networks. GENSiPS Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty
2009	C	`conf`	Adaptive intervention in Probabilistic Boolean Networks. ACC Ritwik Layek, Aniruddha Datta, Ranadip Pal, Edward R. Dougherty
2009	J	`jnl`	Adaptive intervention in probabilistic boolean networks. Bioinform. Ritwik Layek, Aniruddha Datta, Ranadip Pal, Edward R. Dougherty
2009	J	`jnl`	Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes. BMC Bioinform. Amin Zollanvari, Mary Jane Cunningham, Ulisses M. Braga-Neto, Edward R. Dougherty
2009	—	`conf`	Bagging degrades the performance of linear discriminant classifiers. GENSiPS Thang T. Vu, Ulisses M. Braga-Neto, Edward R. Dougherty
2009	J	`jnl`	Bayesian robustness in the control of gene regulatory networks. IEEE Trans. Signal Process. Ranadip Pal, Aniruddha Datta, Edward R. Dougherty
2009	—	`conf`	Bolstered error estimator with feature selection. GENSiPS Chao Sima, Thang T. Vu, Ulisses M. Braga-Neto, Edward R. Dougherty
2009	J	`jnl`	Conditioning-Based Modeling of Contextual Genomic Regulation. IEEE ACM Trans. Comput. Biol. Bioinform. Edward R. Dougherty, Marcel Brun, Jeffrey M. Trent, Michael L. Bittner
2009	—	`conf`	Control-compatible state reduction for Boolean networks. GENSiPS Xiaoning Qian, Edward R. Dougherty
2009	—	`conf`	Critical Boolean networks require minimal intervention rate. GENSiPS Golnaz Vahedi, Ilya Shmulevich, Wenbin Liu, Edward R. Dougherty
2009	J	`jnl`	Identifying Genes Involved in Cyclic Processes by Combining Gene Expression Analysis and Prior Knowledge. EURASIP J. Bioinform. Syst. Biol. Wentao Zhao, Erchin Serpedin, Edward R. Dougherty
2009	J	`jnl`	Impact of Missing Value Imputation on Classification for DNA Microarray Gene Expression Data - A Model-Based Study. EURASIP J. Bioinform. Syst. Biol. Youting Sun, Ulisses M. Braga-Neto, Edward R. Dougherty
2009	J	`jnl`	Intervention in Context-Sensitive Probabilistic Boolean Networks Revisited. EURASIP J. Bioinform. Syst. Biol. Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty
2009	J	`jnl`	Intervention in gene regulatory networks via greedy control policies based on long-run behavior. BMC Syst. Biol. Xiaoning Qian, Ivan Ivanov, Noushin Ghaffari, Edward R. Dougherty
2009	J	`jnl`	On the sampling distribution of resubstitution and leave-one-out error estimators for linear classifiers. Pattern Recognit. Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty
2009	—	`conf`	Open-Loop Feedback Intervention: Control of gene regulatory networks with unmeasurable context. GENSiPS Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty
2009	J	`jnl`	Optimal Intervention Strategies for Cyclic Therapeutic Methods. IEEE Trans. Biomed. Eng. Golnaz Vahedi, Babak Faryabi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty
2009	J	`jnl`	Performance of feature-selection methods in the classification of high-dimension data. Pattern Recognit. Jianping Hua, Waibhav Tembe, Edward R. Dougherty
2009	—	`conf`	Quantification of data extraction noise in probabilistic Boolean Network modeling. GENSiPS Ranadip Pal, Aniruddha Datta, Edward R. Dougherty
2009	—	`conf`	Sample size calculation from specified RMS of the resubstitution error for linear classifiers. GENSiPS Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty
2009	J	`jnl`	Spectral Preprocessing for Clustering Time-Series Gene Expressions. EURASIP J. Bioinform. Syst. Biol. Wentao Zhao, Erchin Serpedin, Edward R. Dougherty
2009	C	`conf`	Steady-state analysis of genetic regulatory networks modeled by nonlinear ordinary differential equations. CIBCB Haixin Wang, Lijun Qian, Edward R. Dougherty
2009	J	`jnl`	The effect of microarray image compression on expression-based classification. Signal Image Video Process. Qian Xu, Jianping Hua, Zixiang Xiong, Michael L. Bittner, Edward R. Dougherty
2008	J	`jnl`	Classification with reject option in gene expression data. Bioinform. Blaise Hanczar, Edward R. Dougherty
2008	J	`jnl`	Detecting Periodic Genes from Irregularly Sampled Gene Expressions: A Comparison Study. EURASIP J. Bioinform. Syst. Biol. Wentao Zhao, Kwadwo Agyepong, Erchin Serpedin, Edward R. Dougherty
2008	J	`jnl`	Effect of Function Perturbation on the Steady-State Distribution of Genetic Regulatory Networks: Optimal Structural Intervention. IEEE Trans. Signal Process. Xiaoning Qian, Edward R. Dougherty
2008	Misc	`conf`	Identifying drosophila cell-cycle regulated genes from irregular microarray data. ICASSP Wentao Zhao, Kwadwo Agyepong, Erchin Serpedin, Edward R. Dougherty
2008	—	`ed.`	Image Processing: Algorithms and Systems VI, San Jose, California, USA, January 28-29, 2008 Image Processing: Algorithms and Systems Jaakko Astola, Karen O. Egiazarian, Edward R. Dougherty
2008	J	`jnl`	Inference of Boolean Networks Using Sensitivity Regularization. EURASIP J. Bioinform. Syst. Biol. Wenbin Liu, Harri Lähdesmäki, Edward R. Dougherty, Ilya Shmulevich
2008	J	`jnl`	Inference of Noisy Nonlinear Differential Equation Models for Gene Regulatory Networks Using Genetic Programming and Kalman Filtering. IEEE Trans. Signal Process. Lijun Qian, Haixin Wang, Edward R. Dougherty
2008	J	`jnl`	Inferring Connectivity of Genetic Regulatory Networks Using Information-Theoretic Criteria. IEEE ACM Trans. Comput. Biol. Bioinform. Wentao Zhao, Erchin Serpedin, Edward R. Dougherty
2008	J	`jnl`	Intervention in Gene Regulatory Networks via a Stationary Mean-First-Passage-Time Control Policy. IEEE Trans. Biomed. Eng. Golnaz Vahedi, Babak Faryabi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty
2008	J	`jnl`	Intrinsically Multivariate Predictive Genes. IEEE J. Sel. Top. Signal Process. David Correa Martins Jr., Ulisses M. Braga-Neto, Ronaldo Fumio Hashimoto, Michael L. Bittner, Edward R. Dougherty
2008	C	`conf`	Mean first-passage time control policy versus reinforcement-learning control policy in gene regulatory networks. ACC Golnaz Vahedi, Babak Faryabi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty
2008	J	`jnl`	Optimal Constrained Stationary Intervention in Gene Regulatory Networks. EURASIP J. Bioinform. Syst. Biol. Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty
2008	J	`jnl`	Optimal Intervention in Asynchronous Genetic Regulatory Networks. IEEE J. Sel. Top. Signal Process. Babak Faryabi, Jean-François Chamberland, Golnaz Vahedi, Aniruddha Datta, Edward R. Dougherty
2008	C	`conf`	Optimal intervention in semi-Markov-based asynchronous genetic regulatory networks. ACC Babak Faryabi, Jean-François Chamberland, Golnaz Vahedi, Aniruddha Datta, Edward R. Dougherty
2008	J	`jnl`	Recovering Genetic Regulatory Networks from Chromatin Immunoprecipitation and Steady-State Microarray Data. EURASIP J. Bioinform. Syst. Biol. Wentao Zhao, Erchin Serpedin, Edward R. Dougherty
2008	J	`jnl`	Robust Intervention in Probabilistic Boolean Networks. IEEE Trans. Signal Process. Ranadip Pal, Aniruddha Datta, Edward R. Dougherty
2008	J	`jnl`	The peaking phenomenon in the presence of feature-selection. Pattern Recognit. Lett. Chao Sima, Edward R. Dougherty
2008	J	`jnl`	Which Is Better: Holdout or Full-Sample Classifier Design? EURASIP J. Bioinform. Syst. Biol. Marcel Brun, Qian Xu, Edward R. Dougherty
2007	J	`jnl`	Comparison of Gene Regulatory Networks via Steady-State Trajectories. EURASIP J. Bioinform. Syst. Biol. Marcel Brun, Seungchan Kim, Woonjung Choi, Edward R. Dougherty
2007	J	`jnl`	Control approaches for probabilistic gene regulatory networks - What approaches have been developed for addreassinig the issue of intervention? IEEE Signal Process. Mag. Anirulddlha Datta, Ranadip Pal, Ashish Choudhary, Edward R. Dougherty
2007	J	`jnl`	Decorrelation of the True and Estimated Classifier Errors in High-Dimensional Settings. EURASIP J. Bioinform. Syst. Biol. Blaise Hanczar, Jianping Hua, Edward R. Dougherty
2007	J	`jnl`	Dynamics Preserving Size Reduction Mappings for Probabilistic Boolean Networks. IEEE Trans. Signal Process. Ivan Ivanov, Ranadip Pal, Edward R. Dougherty
2007	J	`jnl`	Genetic Regulatory Networks. EURASIP J. Bioinform. Syst. Biol. Edward R. Dougherty, Tatsuya Akutsu, Paul Dan Cristea, Ahmed H. Tewfik
2007	C	`ed.`	Image Processing: Algorithms and Systems V, San Jose, California, USA, January 29-30, 2007 Image Processing: Algorithms and Systems Jaakko Astola, Karen O. Egiazarian, Edward R. Dougherty
2007	C	`conf`	Inference of Gene Regulatory Networks using S-System: A Unified Approach. CIBCB Haixin Wang, Lijun Qian, Edward R. Dougherty
2007	J	`jnl`	Inference of a Probabilistic Boolean Network from a Single Observed Temporal Sequence. EURASIP J. Bioinform. Syst. Biol. Stephen Marshall, Le Yu, Yufei Xiao, Edward R. Dougherty
2007	J	`jnl`	Model-based evaluation of clustering validation measures. Pattern Recognit. Marcel Brun, Chao Sima, Jianping Hua, James Lowey, Brent Carroll, Edward Suh, Edward R. Dougherty
2007	—	`conf`	Modeling Genetic Regulatory Networks by Sigmoidal Functions: A Joint Genetic Algorithm and Kalman Filtering Approach. ICNC (2) Haixin Wang, Lijun Qian, Edward R. Dougherty
2007	J	`jnl`	Quantification of the Impact of Feature Selection on the Variance of Cross-Validation Error Estimation. EURASIP J. Bioinform. Syst. Biol. Yufei Xiao, Jianping Hua, Edward R. Dougherty
2007	—	`conf`	Reconstruction of Genetic Regulatory Networks Based on the Posterior Probabilities of Gene Regulations. ICASSP (1) Wentao Zhao, Kwadwo Agyepong, Erchin Serpedin, Edward R. Dougherty
2007	C	`conf`	Robust Intervention in Probabilistic Boolean Networks. ACC Ranadip Pal, Aniruddha Datta, Edward R. Dougherty
2007	J	`jnl`	SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays. Bioinform. Jianping Hua, David W. Craig, Marcel Brun, Jennifer Webster, Victoria Zismann, Waibhav Tembe, Keta Joshipura, Matthew J. Huentelman, Edward R. Dougherty, Dietrich A. Stephan
2007	J	`jnl`	The impact of function perturbations in Boolean networks. Bioinform. Yufei Xiao, Edward R. Dougherty
2006	J	`jnl`	Design of probabilistic Boolean networks under the requirement of contextual data consistency. IEEE Trans. Signal Process. Edward R. Dougherty, Yufei Xiao
2006	J	`jnl`	Genetic test bed for feature selection. Bioinform. Ashish Choudhary, Marcel Brun, Jianping Hua, James Lowey, Edward Suh, Edward R. Dougherty
2006	C	`ed.`	Image Processing: Algorithms and Systems IV, San Jose, California, USA, January 17, 2006 Image Processing: Algorithms and Systems Edward R. Dougherty, Jaakko Astola, Karen O. Egiazarian
2006	J	`jnl`	Inferring gene regulatory networks from time series data using the minimum description length principle. Bioinform. Wentao Zhao, Erchin Serpedin, Edward R. Dougherty
2006	J	`jnl`	Intervention in a family of Boolean networks. Bioinform. Ashish Choudhary, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2006	J	`jnl`	Noise-injected neural networks show promise for use on small-sample expression data. BMC Bioinform. Jianping Hua, James Lowey, Zixiang Xiong, Edward R. Dougherty
2006	J	`jnl`	Normalization Benefits Microarray-Based Classification. EURASIP J. Bioinform. Syst. Biol. Jianping Hua, Yoganand Balagurunathan, Yidong Chen, James Lowey, Michael L. Bittner, Zixiang Xiong, Edward Suh, Edward R. Dougherty
2006	—	`conf`	Optimal Control in a Family of Boolean Networks. CDC Ashish Choudhary, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2006	J	`jnl`	Optimal convex error estimators for classification. Pattern Recognit. Chao Sima, Edward R. Dougherty
2006	C	`conf`	Optimal infinite horizon control for probabilistic Boolean networks. ACC Ranadip Pal, Aniruddha Datta, Edward R. Dougherty
2006	J	`jnl`	Optimal infinite-horizon control for probabilistic Boolean networks. IEEE Trans. Signal Process. Ranadip Pal, Aniruddha Datta, Edward R. Dougherty
2006	J	`jnl`	Optimizing Consistency-Based Design of Context-Sensitive Gene Regulatory Networks. IEEE Trans. Circuits Syst. I Regul. Pap. Yufei Xiao, Edward R. Dougherty
2006	J	`jnl`	What should be expected from feature selection in small-sample settings. Bioinform. Chao Sima, Edward R. Dougherty
2005	C	`conf`	Assignment of terminal penalties in controlling genetic regulatory networks. ACC Ashish Choudhary, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2005	J	`jnl`	Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS. Bioinform. Ranadip Pal, Aniruddha Datta, Albert J. Fornace Jr., Michael L. Bittner, Edward R. Dougherty
2005	J	`jnl`	Determination of the optimal number of features for quadratic discriminant analysis via the normal approximation to the discriminant distribution. Pattern Recognit. Jianping Hua, Zixiang Xiong, Edward R. Dougherty
2005	J	`jnl`	Evolving Feature Selection. IEEE Intell. Syst. Huan Liu, Edward R. Dougherty, Jennifer G. Dy, Kari Torkkola, Eugene Tuv, Hanchuan Peng, Chris H. Q. Ding, Fuhui Long, Michael E. Berens, Lance Parsons, Zheng Zhao, Lei Yu, George Forman
2005	J	`jnl`	Exact performance of error estimators for discrete classifiers. Pattern Recognit. Ulisses M. Braga-Neto, Edward R. Dougherty
2005	C	`conf`	External control in a special class of probabilistic Boolean networks. ACC Ranadip Pal, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2005	J	`jnl`	Feature selection algorithms to find strong genes. Pattern Recognit. Lett. Paulo J. S. Silva, Ronaldo Fumio Hashimoto, Seungchan Kim, Junior Barrera, Leônidas de Oliveira Brandão, Edward Suh, Edward R. Dougherty
2005	J	`jnl`	Generating Boolean networks with a prescribed attractor structure. Bioinform. Ranadip Pal, Ivan Ivanov, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2005	J	`jnl`	Genomic signal processing: diagnosis and therapy. IEEE Signal Process. Mag. Edward R. Dougherty, Anirulddlha Datta
2005	J	`jnl`	How many samples are needed to build a classifier: a general sequential approach. Bioinform. Wenjiang J. Fu, Edward R. Dougherty, Bani K. Mallick, Raymond J. Carroll
2005	J	`jnl`	Impact of error estimation on feature selection. Pattern Recognit. Chao Sima, Sanju Attoor, Ulisses M. Braga-Neto, James Lowey, Edward Suh, Edward R. Dougherty
2005	J	`jnl`	Intervention in context-sensitive probabilistic Boolean networks. Bioinform. Ranadip Pal, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2005	J	`jnl`	Optimal number of features as a function of sample size for various classification rules. Bioinform. Jianping Hua, Zixiang Xiong, James Lowey, Edward Suh, Edward R. Dougherty
2005	J	`jnl`	Optimal robust classifiers. Pattern Recognit. Edward R. Dougherty, Jianping Hua, Zixiang Xiong, Yidong Chen
2005	J	`jnl`	Research issues in genomic signal processing. IEEE Signal Process. Mag. Edward R. Dougherty, Aniruddha Datta, Chao Sima
2005	J	`jnl`	Steady-state probabilities for attractors in probabilistic Boolean networks. Signal Process. Marcel Brun, Edward R. Dougherty, Ilya Shmulevich
2005	J	`jnl`	Superior feature-set ranking for small samples using bolstered error estimation. Bioinform. Chao Sima, Ulisses M. Braga-Neto, Edward R. Dougherty
2005	J	`jnl`	The coefficient of intrinsic dependence (feature selection using el CID). Pattern Recognit. Tailen Hsing, Li-Yu Liu, Marcel Brun, Edward R. Dougherty
2005	J	`jnl`	The fundamental role of pattern recognition for gene-expression/microarray data in bioinformatics. Pattern Recognit. Edward R. Dougherty
2004	J	`jnl`	A Bayesian approach to nonlinear probit gene selection and classification. J. Frankl. Inst. Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty
2004	J	`jnl`	A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks. Bioinform. Xiaobo Zhou, Xiaodong Wang, Ranadip Pal, Ivan Ivanov, Michael L. Bittner, Edward R. Dougherty
2004	J	`jnl`	A Lattice-Based Minimal Gray-Scale Switching Algorithm for Obtaining the Optimal Increasing Filter from the Optimal Filter. J. Math. Imaging Vis. Edward R. Dougherty
2004	J	`jnl`	A probabilistic theory of clustering. Pattern Recognit. Edward R. Dougherty, Marcel Brun
2004	J	`jnl`	Automatic design of morphological operators. J. Electronic Imaging Edward R. Dougherty
2004	J	`jnl`	Bolstered error estimation. Pattern Recognit. Ulisses M. Braga-Neto, Edward R. Dougherty
2004	J	`jnl`	Classifier performance as a function of distributional complexity. Pattern Recognit. Sanju Attoor, Edward R. Dougherty
2004	J	`jnl`	Editorial. EURASIP J. Adv. Signal Process. Xiaodong Wang, Edward R. Dougherty, Yidong Chen, Carsten O. Peterson
2004	J	`jnl`	External control in Markovian genetic regulatory networks: the imperfect information case. Bioinform. Aniruddha Datta, Ashish Choudhary, Michael L. Bittner, Edward R. Dougherty
2004	J	`jnl`	Gene Clustering Based on Clusterwide Mutual Information. J. Comput. Biol. Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty, Daniel E. Russ, Edward Suh
2004	J	`jnl`	Gene Prediction Using Multinomial Probit Regression with Bayesian Gene Selection. EURASIP J. Adv. Signal Process. Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty
2004	J	`jnl`	Genomic Signal Processing: The Salient Issues. EURASIP J. Adv. Signal Process. Edward R. Dougherty, Ilya Shmulevich, Michael L. Bittner
2004	J	`jnl`	Growing genetic regulatory networks from seed genes. Bioinform. Ronaldo Fumio Hashimoto, Seungchan Kim, Ilya Shmulevich, Wei Zhang, Michael L. Bittner, Edward R. Dougherty
2004	—	`ed.`	Image Processing: Algorithms and Systems III, San Jose, California, USA, January 18, 2004 Image Processing: Algorithms and Systems Edward R. Dougherty, Jaakko Astola, Karen O. Egiazarian
2004	J	`jnl`	Is cross-validation better than resubstitution for ranking genes? Bioinform. Ulisses M. Braga-Neto, Ronaldo Fumio Hashimoto, Edward R. Dougherty, Danh V. Nguyen, Raymond J. Carroll
2004	J	`jnl`	Is cross-validation valid for small-sample microarray classification? Bioinform. Ulisses M. Braga-Neto, Edward R. Dougherty
2004	—	`conf`	New challenges in non-linear signal and image processing. EUSIPCO Stephen Marshall, Edward R. Dougherty
2004	J	`jnl`	Nonlinear Filter Design Using Envelopes. J. Math. Imaging Vis. Marcel Brun, Roberto Hirata Jr., Junior Barrera, Edward R. Dougherty
2004	J	`jnl`	Optimal Filters with Multiresolution Apertures. J. Math. Imaging Vis. Alan C. Green, Edward R. Dougherty, Stephen Marshall, David Greenhalgh
2004	J	`jnl`	Reduction Mappings between Probabilistic Boolean Networks. EURASIP J. Adv. Signal Process. Ivan Ivanov, Edward R. Dougherty
2004	J	`jnl`	Which is better for cDNA-microarray-based classification: ratios or direct intensities. Bioinform. Sanju Attoor, Edward R. Dougherty, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent
2003	—	`conf`	Application of dynamic programming in genetic regulatory networks. CDC Aniruddha Datta, Ashish Choudhary, Michael L. Bittner, Edward R. Dougherty
2003	J	`jnl`	Construction of genomic networks using mutual-information clustering and reversible-jump Markov-chain-Monte-Carlo predictor design. Signal Process. Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty
2003	J	`jnl`	Corrected Small-sample Estimation of the Bayes Error. Bioinform. Marcel Brun, David Sabbagh, Seungchan Kim, Edward R. Dougherty
2003	J	`jnl`	Design of multi-mask aperture filters. Signal Process. Alan C. Green, Stephen Marshall, David Greenhalgh, Edward R. Dougherty
2003	J	`jnl`	Design of optimal binary filters under joint multiresolution-envelope constraint. Pattern Recognit. Lett. Marcel Brun, Edward R. Dougherty, Roberto Hirata Jr., Junior Barrera
2003	J	`jnl`	Efficient selection of feature sets possessing high coefficients of determination based on incremental determinations. Signal Process. Ronaldo Fumio Hashimoto, Edward R. Dougherty, Marcel Brun, Zheng-Zheng Zhou, Michael L. Bittner, Jeffrey M. Trent
2003	J	`jnl`	External Control in Markovian Genetic Regulatory Networks. Mach. Learn. Aniruddha Datta, Ashish Choudhary, Michael L. Bittner, Edward R. Dougherty
2003	C	`conf`	External control in Markovian genetic regulatory networks. ACC Aniruddha Datta, Ashish Choudhary, Michael L. Bittner, Edward R. Dougherty
2003	J	`jnl`	Gene selection: a Bayesian variable selection approach. Bioinform. Kyeong Eun Lee, Naijun Sha, Edward R. Dougherty, Marina Vannucci, Bani K. Mallick
2003	J	`jnl`	Genomic signal processing. Signal Process. Jaakko Astola, Edward R. Dougherty, Ilya Shmulevich, Ioan Tabus
2003	J	`jnl`	Granulometric parametric estimation for the random Boolean model using optimal linear filters and optimal structuring elements. Pattern Recognit. Lett. Yoganand Balagurunathan, Edward R. Dougherty
2003	—	`ed.`	Image Processing: Algorithms and Systems II, Santa Clara, California, USA, January 20, 2003 Image Processing: Algorithms and Systems Edward R. Dougherty, Jaakko Astola, Karen O. Egiazarian
2003	J	`jnl`	Mappings between probabilistic Boolean networks. Signal Process. Edward R. Dougherty, Ilya Shmulevich
2003	J	`jnl`	Missing-value estimation using linear and non-linear regression with Bayesian gene selection. Bioinform. Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty
2003	J	`jnl`	Morphological Texture Analysis Using the Texture Evolution Function. Int. J. Pattern Recognit. Artif. Intell. J. McKenzie, Stephen Marshall, Alison J. Gray, Edward R. Dougherty
2003	J	`jnl`	Relation Between Permutation-Test P Values and Classifier Error Estimates. Mach. Learn. Tailen Hsing, Sanju Attoor, Edward R. Dougherty
2002	—	`conf`	Automatic counting of illuminated spheres in a random Boolean model. Image Processing: Algorithms and Systems Artyom M. Grigoryan, Edward R. Dougherty
2002	—	`conf`	Clustering granulometric features. Image Processing: Algorithms and Systems Marcel Brun, Yoganand Balagurunathan, Junior Barrera, Edward R. Dougherty
2002	J	`jnl`	From Boolean to probabilistic Boolean networks as models of genetic regulatory networks. Proc. IEEE Ilya Shmulevich, Edward R. Dougherty, Wei Zhang
2002	J	`jnl`	Gene perturbation and intervention in probabilistic Boolean networks. Bioinform. Ilya Shmulevich, Edward R. Dougherty, Wei Zhang
2002	J	`jnl`	Granulometric Size Density for Segmented Random-Disk Models. J. Math. Imaging Vis. Edward R. Dougherty
2002	—	`conf`	Granulometric classifiers from small samples. Image Processing: Algorithms and Systems Yoganand Balagurunathan, Ronaldo Fumio Hashimoto, Seungchan Kim, Junior Barrera, Edward R. Dougherty
2002	J	`jnl`	Guest Editorial. J. Math. Imaging Vis. Edward R. Dougherty, Jaakko Astola
2002	—	`ed.`	Image Processing: Algorithms and Systems, San Jose, California, USA, January 19, 2002 Image Processing: Algorithms and Systems Edward R. Dougherty, Jaakko Astola, Karen O. Egiazarian
2002	J	`jnl`	Inference from Clustering with Application to Gene-Expression Microarrays. J. Comput. Biol. Edward R. Dougherty, Junior Barrera, Marcel Brun, Seungchan Kim, Roberto Marcondes Cesar Junior, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent
2002	J	`jnl`	Multiresolution Design of Aperture Operators. J. Math. Imaging Vis. Roberto Hirata Jr., Marcel Brun, Junior Barrera, Edward R. Dougherty
2002	J	`jnl`	Optimal linear granulometric estimation for random sets. Pattern Recognit. Yoganand Balagurunathan, Edward R. Dougherty
2002	J	`jnl`	Pattern Recognition Theory in Nonlinear Signal Processing. J. Math. Imaging Vis. Edward R. Dougherty, Junior Barrera
2002	J	`jnl`	Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks. Bioinform. Ilya Shmulevich, Edward R. Dougherty, Seungchan Kim, Wei Zhang
2002	J	`jnl`	Ratio statistics of gene expression levels and applications to microarray data analysis. Bioinform. Yidong Chen, Vishnu G. Kamat, Edward R. Dougherty, Michael L. Bittner, Paul S. Meltzer, Jeffrey M. Trent
2002	J	`jnl`	Simulation Toolbox for 3D-FISH Spot-Counting Algorithms. Real Time Imaging Artyom M. Grigoryan, Galen Hostetter, Olli-P. Kallioniemi, Edward R. Dougherty
2002	J	`jnl`	Strong Feature Sets from Small Samples. J. Comput. Biol. Seungchan Kim, Edward R. Dougherty, Junior Barrera, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent
2002	J	`jnl`	ayesian automatic relevance determination algorithms for classifying gene expression data. Bioinform. Ilya Shmulevich, Edward R. Dougherty, Wei Zhang
2001	J	`jnl`	Asymptotic joint normality of the granulometric moments. Pattern Recognit. Lett. Krishnamoorthy Sivakumar, Yoganand Balagurunathan, Edward R. Dougherty
2001	J	`jnl`	Bayesian robust optimal linear filters. Signal Process. Artyom M. Grigoryan, Edward R. Dougherty
2001	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
2001	—	`conf`	Efficient design of minmax ODIF robust stack filters. ISSPA Bogdan Dumitrescu, Ioan Tabus, Sari Peltonen, Jaakko Astola, Edward R. Dougherty
2001	—	`conf`	Hybrid Human-Machine Non-Linear Filter Design Using Envelopes. SIBGRAPI Marcel Brun, Roberto Hirata Jr., Junior Barrera, Edward R. Dougherty
2001	J	`jnl`	Morphological granulometric estimation of random patterns in the context of parameterized random sets. Pattern Recognit. Sinan Batman, Edward R. Dougherty
2001	J	`jnl`	Multiresolution Analysis for Optimal Binary Filters. J. Math. Imaging Vis. Edward R. Dougherty, Junior Barrera, Gerard Mozelle, Seungchan Kim, Marcel Brun
2001	J	`jnl`	Non-homothetic granulometric mixing theory with application to blood cell counting. Pattern Recognit. Nipon Theera-Umpon, Edward R. Dougherty, Paul D. Gader
2001	J	`jnl`	Optimal Conjunctive Granulometric Bandpass Filters. J. Math. Imaging Vis. Edward R. Dougherty
2001	J	`jnl`	Robust optimal granulometric bandpass filters. Signal Process. Edward R. Dougherty, Yidong Chen
2000	J	`jnl`	A Constant-time Algorithm for Erosions/Dilations with Applications to Morphological Texture Feature Computation. Real Time Imaging Krishnamoorthy Sivakumar, Manish J. Patel, Nasser Kehtarnavaz, Yoganand Balagurunathan, Edward R. Dougherty
2000	J	`jnl`	A switching algorithm for design of optimal increasing binary filters over large windows. Pattern Recognit. Nina S. T. Hirata, Edward R. Dougherty, Junior Barrera
2000	J	`jnl`	Aperture filters. Signal Process. Roberto Hirata Jr., Edward R. Dougherty, Junior Barrera
2000	—	`conf`	Bayesian multiresolution filter design. Electronic Imaging: Nonlinear Image Processing Vishnu G. Kamat, Edward R. Dougherty, Junior Barrera
2000	C	`conf`	Boosting OCR Classifier by Optimal Edge Noise Filtering. ISMM Junior Barrera, Marcel Brun, Routo Terada, Edward R. Dougherty
2000	J	`jnl`	Coefficient of determination in nonlinear signal processing. Signal Process. Edward R. Dougherty, Seungchan Kim, Yidong Chen
2000	—	`conf`	Design of gray-scale nonlinear filters via multiresolution apertures. EUSIPCO Roberto Hirata, Edward R. Dougherty, Junior Barrera
2000	—	`conf`	Design of statistically optimal morphological operators. EUSIPCO Junior Barrera, Edward R. Dougherty
2000	—	`conf`	Fibonacci thresholding, signal representation and morphological filters. EUSIPCO Artyom M. Grigoryan, Sos S. Agaian, Edward R. Dougherty
2000	C	`conf`	From the Sup-Decomposition to A Sequential Decomposition. ISMM Ronaldo Fumio Hashimoto, Junior Barrera, Edward R. Dougherty
2000	J	`jnl`	Heterogeneous morphological granulometries. Pattern Recognit. Sinan Batman, Edward R. Dougherty, Francis Sand
2000	J	`jnl`	Hybrid human-machine binary morphological operator design. An independent constraint approach. Signal Process. Junior Barrera, Edward R. Dougherty, Marcel Brun
2000	J	`jnl`	Multiresolution Bayesian design of binary filters. J. Electronic Imaging Vishnu G. Kamat, Edward R. Dougherty, Junior Barrera
2000	—	`conf`	Multiresolution filter design. Electronic Imaging: Nonlinear Image Processing Edward R. Dougherty, Junior Barrera, Gerard Mozelle, Seungchan Kim, Marcel Brun
2000	—	`ed.`	Nonlinear Image Processing XI, Electronic Imaging, San Jose, CA, United States, 22-28 January 2000 Electronic Imaging: Nonlinear Image Processing Edward R. Dougherty, Jaakko T. Astola
2000	—	`conf`	Parametric design of nonlinear optimal filters. EUSIPCO Edward R. Dougherty
2000	—	`conf`	Small-sample estimation of the error of the optimal binary filter. EUSIPCO David L. Sabbagh, Edward R. Dougherty
2000	C	`conf`	Some Applications of Aperture Filters. ISMM Roberto Hirata Jr., Edward R. Dougherty, Junior Barrera
1999	J	`jnl`	Design and Analysis of Robust Binary Filters in the Context of a Prior Distribution for the States of Nature. J. Math. Imaging Vis. Artyom M. Grigoryan, Edward R. Dougherty
1999	—	`conf`	Design of Statistically Optimal Stack Filters. SIBGRAPI Nina S. T. Hirata, Junior Barrera, Edward R. Dougherty
1999	—	`conf`	Efficient switching algorithm for designing increasing binary filters. Electronic Imaging: Nonlinear Image Processing Nina Sumiko Tomita Hirata, Edward R. Dougherty, Junior Barrera
1999	—	`conf`	Hybrid human-machine binary morphological operator design. Electronic Imaging: Nonlinear Image Processing Junior Barrera, Edward R. Dougherty, Marcel Brun
1999	J	`jnl`	Markovian Analysis of Adaptive Reconstructive Multiparameter tau-Openings. J. Math. Imaging Vis. Yidong Chen, Edward R. Dougherty
1999	J	`jnl`	Maximum-likelihood estimation and optimal filtering in the nondirectional, one-dimensional binomial germ-grain model. Pattern Recognit. John C. Handley, Edward R. Dougherty
1999	B	`conf`	Morphological texture-based classification of abnormalities in mammograms. Image Processing Sooncheol Baeg, Nasser Kehtarnavaz, Edward R. Dougherty
1999	—	`ed.`	Nonlinear Image Processing X, Electronic Imaging, San Jose, CA, United States, 23-29 January 1999 Electronic Imaging: Nonlinear Image Processing Edward R. Dougherty, Jaakko T. Astola
1999	—	`conf`	Nonlinear filters in genomic control. NSIP Edward R. Dougherty, Michael L. Bittner, Yidong Chen, Seungchan Kim, Krishnamoorthy Sivakumar, Junior Barrera, Paul S. Meltzer, Jeffrey M. Trent
1999	—	`conf`	Optimal range-domain window filters. Electronic Imaging: Nonlinear Image Processing Roberto Hirata, Edward R. Dougherty, Junior Barrera
1999	J	`jnl`	Probability distributions for discrete one-dimensional coverage processes. Signal Process. John C. Handley, Edward R. Dougherty
1999	—	`book`	Random processes for image and signal processing. Edward R. Dougherty
1999	J	`jnl`	Robustness of granulometric moments. Pattern Recognit. Francis Sand, Edward R. Dougherty
1999	—	`conf`	The Granulometric Size Density in Filter Optimization. SIBGRAPI Edward R. Dougherty
1999	J	`jnl`	Two-stage binary filters. J. Electronic Imaging Octavian V. Sarca, Edward R. Dougherty, Jaakko Astola
1999	J	`jnl`	Unsupervised morphological granulometric texture segmentation of digital mammograms. J. Electronic Imaging Sooncheol Baeg, Sinan Batman, Edward R. Dougherty, Vishnu G. Kamat, Nasser Kehtarnavaz, Seungchan Kim, Anthony T. Popov, Krishnamoorthy Sivakumar, Robert B. Shah
1998	J	`jnl`	Asymptotic granulometric mixing theorem: Morphological estimation of sizing parameters and mixture proportions. Pattern Recognit. Francis Sand, Edward R. Dougherty
1998	—	`conf`	Binary filter estimation for large windows. SIBGRAPI Edward R. Dougherty
1998	B	`conf`	Computation of morphological texture features for medical imaging applications. Image Processing Manish J. Patel, Nasser Kehtarnavaz, Edward R. Dougherty, Sinan Batman, Krishnamoorthy Sivakumar, Anthony T. Popov
1998	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1998	J	`jnl`	Robustness of optimal binary filters. J. Electronic Imaging Artyom M. Grigoryan, Edward R. Dougherty
1998	J	`jnl`	Secondarily constrained Boolean filters. Signal Process. Octavian V. Sarca, Edward R. Dougherty, Jaakko Astola
1998	B	`conf`	Segmentation of Mammograms into Distinct Morphological Texture Regions. CBMS Sooncheol Baeg, Anthony T. Popov, Vishnu G. Kamat, Sinan Batman, Krishnamoorthy Sivakumar, Nasser Kehtarnavaz, Edward R. Dougherty, Robert B. Shah
1997	J	`jnl`	Automatic programming of binary morphological machines by design of statistically optimal operators in the context of computational learning theory. J. Electronic Imaging Junior Barrera, Edward R. Dougherty, Nina Sumiko Tomita
1997	J	`jnl`	Design and analysis of fuzzy morphological algorithms for image processing. IEEE Trans. Fuzzy Syst. Divyendu Sinha, Purnendu Sinha, Edward R. Dougherty, Sinan Batman
1997	—	`conf`	Document restoration and enhancement using optimal iterative and paired morphological filters. Document Recognition Yeqing (Juliet) Zhang, Robert P. Loce, Edward R. Dougherty
1997	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1997	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1997	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1997	J	`jnl`	Logically Efficient Spatial Resolution Conversion Using Paired Increasing Operators. Real Time Imaging Robert P. Loce, Edward R. Dougherty, Ronald E. Jodoin, Michael S. Cianciosi
1997	J	`jnl`	Maximum-Likelihood Estimation for the Two-Dimensional Discrete Boolean Random Set and Function Models Using Multidimensional Linear Samples. CVGIP Graph. Model. Image Process. John C. Handley, Edward R. Dougherty
1997	J	`jnl`	Optimal Binary Morphological Bandpass Filters Induced by Granulometric Spectral Representation. J. Math. Imaging Vis. Edward R. Dougherty
1997	J	`jnl`	Optimal and adaptive reconstructive granulometric bandpass filters. Signal Process. Yidong Chen, Edward R. Dougherty
1997	J	`jnl`	Optimal reconstructive τ-openings for disjoint and statistically modeled nondisjoint grains. Signal Process. Edward R. Dougherty, Clara Cuciurean-Zapan
1996	J	`jnl`	Adaptive reconstructive tau-openings: convergence and the steady-state distribution. J. Electronic Imaging Yidong Chen, Edward R. Dougherty
1996	J	`jnl`	Bayesian morphological peak estimation and its application to chromosome counting via fluorescence In Pattern Recognit. Edward R. Dougherty, Yidong Chen, Amir Waks
1996	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1996	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1996	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1996	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1996	J	`jnl`	Existence and synthesis of minimal-basis morphological solutions for a restoration-based boundary-value problem. J. Math. Imaging Vis. Edward R. Dougherty
1996	—	`conf`	Granulometric estimation of distorted shapes. Electronic Imaging: Nonlinear Image Processing Sinan Batman, Edward R. Dougherty
1996	—	`conf`	Maximum-likelihood estimation for the two-dimensional discrete Boolean model using cross-windowed observations. Electronic Imaging: Nonlinear Image Processing John C. Handley, Edward R. Dougherty
1996	—	`conf`	Morphological paradigm for loss-function-based design of digital filters. Visual Information Processing Edward R. Dougherty, Junior Barrera
1996	—	`ed.`	Nonlinear Image Processing VII, Electronic Imaging: Science and Technology, San Jose, CA, USA, 28 January - 2 February 1996 Electronic Imaging: Nonlinear Image Processing Edward R. Dougherty, Jaakko T. Astola, Harold G. Longbotham
1996	C	`conf`	Optimal and Adaptive Design of Reconstructive Granulometric Filters. ISMM Edward R. Dougherty, Yidong Chen
1996	J	`jnl`	Optimal binary differencing filters: design, logic complexity, precision analysis, and application to digital document processing. J. Electronic Imaging Edward R. Dougherty, Robert P. Loce
1996	J	`jnl`	Optimal nonlinear filter for signal-union-noise and runlength analysis in the directional one-dimensional discrete Boolean random set model. Signal Process. John C. Handley, Edward R. Dougherty
1996	B	`conf`	Optimal restoration of compressed biomedical images: a discrete lattice theoretic approach. Image Processing Vivek Swarnakar, Athimootil V. Mathew, Edward R. Dougherty, Claudio H. Sibata
1995	J	`jnl`	A general axiomatic theory of intrinsically fuzzy mathematical morphologies. IEEE Trans. Fuzzy Syst. Divyendu Sinha, Edward R. Dougherty
1995	J	`jnl`	Computational Gray-scale Mathematical Morphology on Lattices (A Comparator-based Image Algebra) Part 1: Architecture. Real Time Imaging Edward R. Dougherty, Divyendu Sinha
1995	J	`jnl`	Computational Gray-scale Mathematical Morphology on Lattices (A Comparator-based Image Algebra) Part II: Image Operators. Real Time Imaging Edward R. Dougherty, Divyendu Sinha
1995	—	`conf`	Design and application of binary differencing filters. Document Recognition Robert P. Loce, Edward R. Dougherty
1995	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1995	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1995	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1995	J	`jnl`	Editorial. J. Electronic Imaging Edward R. Dougherty
1995	—	`conf`	Filtering clutter by optimal granulometric bandpass filters. Visual Information Processing Edward R. Dougherty
1995	J	`jnl`	Morphological pattern-spectrum classification of noisy shapes: Exterior granulometries. Pattern Recognit. Edward R. Dougherty, Yingchong Cheng
1995	—	`conf`	Multivariate morphological granulometric texture classification using Walsh and wavelet features. Visual Information Processing Sinan Batman, Edward R. Dougherty, Mark C. Rzadca, Joseph O. Chapa
1995	J	`jnl`	Recursive maximum-likelihood estimation in the one-dimensional discrete Boolean random set model. Signal Process. Edward R. Dougherty, John C. Handley
1995	J	`jnl`	Representation of Linear Granulometric Moments for Deterministic and Random Binary Euclidean Images. J. Vis. Commun. Image Represent. Edward R. Dougherty, Francis Sand
1994	C	`conf`	Adaptive Parameterized Openings. ISMM Yidong Chen, Edward R. Dougherty
1994	J	`jnl`	Computational mathematical morphology. Signal Process. Edward R. Dougherty, Divyendu Sinha
1994	J	`jnl`	Minimal representation of -openings via pattern bases. Pattern Recognit. Lett. Edward R. Dougherty
1994	J	`jnl`	Model-based optimal restoration of fax images in the context of mathematical morphology. J. Electronic Imaging John C. Handley, Edward R. Dougherty
1994	J	`jnl`	Optimal mean-absolute-error filtering of gray-scale signals by the morphological hit-or-miss transform. J. Math. Imaging Vis. Edward R. Dougherty
1994	—	`conf`	Optimal nonlinear fax restoration. Document Recognition John C. Handley, Edward R. Dougherty
1994	J	`jnl`	Precision of morphological-representation estimators for translation-invariant binary filters: Increasing and nonincreasing. Signal Process. Edward R. Dougherty, Robert P. Loce
1994	—	`conf`	Segmentation-free morphological character recognition. Document Recognition Eugene J. Kraus, Edward R. Dougherty
1993	C	`conf`	Computational morphology and representation of operators between complete lattices. VCIP Clara Cuciurean-Zapan, Edward R. Dougherty
1993	J	`jnl`	Gray-scale granulometries compatible with spatial scalings. Signal Process. Eugene J. Kraus, Henk J. A. M. Heijmans, Edward R. Dougherty
1993	J	`jnl`	Linear granulometric moments of noisy binary images. J. Math. Imaging Vis. Bruno Bettoli, Edward R. Dougherty
1993	J	`jnl`	Model-based algorithm for designing suboptimal morphological filters for restoring subtractive-noise-corrupted images. J. Electronic Imaging Ian R. Joughin, Robert M. Haralick, Edward R. Dougherty
1992	J	`jnl`	Asymptotic normality of the morphological pattern-spectrum moments and orthogonal granulometric generators. J. Vis. Commun. Image Represent. Francis Sand, Edward R. Dougherty
1992	J	`jnl`	Estimation of optimal morphological τ-opening parameters based on independent observation of signal and noise pattern spectra. Signal Process. Edward R. Dougherty, Robert M. Haralick, Yidong Chen, Carsten Agerskov, Ulrik Jacobi, Poul Henrik Sloth
1992	J	`jnl`	Euclidean gray-scale granulometries: Representation and umbra inducement. J. Math. Imaging Vis. Edward R. Dougherty
1992	J	`jnl`	Fuzzy mathematical morphology. J. Vis. Commun. Image Represent. Divyendu Sinha, Edward R. Dougherty
1992	J	`jnl`	Hole-spectrum representation and model-based optimal morphological restoration of binary images degraded by subtractive noise. J. Math. Imaging Vis. Edward R. Dougherty, Robert M. Haralick
1992	J	`jnl`	Model-based characterization of statistically optimal design for morphological shape recognition algorithms via the hit-or-miss transform. J. Vis. Commun. Image Represent. Edward R. Dougherty, Dongming Zhao
1992	J	`jnl`	Morphological image segmentation by local granulometric size distributions. J. Electronic Imaging Edward R. Dougherty, Jeff B. Pelz, Francis Sand, Arnold Lent
1992	J	`jnl`	Morphological texture-based maximum-likelihood pixel classification based on local granulometric moments. Pattern Recognit. Edward R. Dougherty, John T. Newell, Jeff B. Pelz
1992	J	`jnl`	Optimal mean-square N-observation digital morphological filters : I. Optimal binary filters. CVGIP Image Underst. Edward R. Dougherty
1992	J	`jnl`	Optimal mean-square N-observation digital morphological filters : II. Optimal gray-scale filters. CVGIP Image Underst. Edward R. Dougherty
1992	J	`jnl`	Optimal morphological restoration: The morphological filter mean-absolute-error theorem. J. Vis. Commun. Image Represent. Robert P. Loce, Edward R. Dougherty
1992	J	`jnl`	Preface. J. Vis. Commun. Image Represent. Jean Serra, Edward R. Dougherty
1992	J	`jnl`	Robust Morphologically Continuous Fourier Descriptors I: Projection-Generated Descriptors. Int. J. Pattern Recognit. Artif. Intell. Edward R. Dougherty, Robert P. Loce
1992	J	`jnl`	Robust Morphologically Continuous Fourier Descriptors II: Continuity and Occlusion Analysis. Int. J. Pattern Recognit. Artif. Intell. Edward R. Dougherty, Robert P. Loce
1992	J	`jnl`	Statistics of the morphological pattern-spectrum moments for a random-grain model. J. Math. Imaging Vis. Francis Sand, Edward R. Dougherty
1992	—	`conf`	The use of first-order structuring-element libraries to design morphological filters. ICPR (3) Robert P. Loce, Edward R. Dougherty
1992	J	`jnl`	Unification of nonlinear filtering in the context of binary logical calculus, part I: Binary filters. J. Math. Imaging Vis. Edward R. Dougherty, Robert M. Haralick
1992	J	`jnl`	Unification of nonlinear filtering in the context of binary logical calculus, part II: Gray-scale filters. J. Math. Imaging Vis. Edward R. Dougherty
1991	J	`jnl`	Application of the Hausdorff metric in gray-scale mathematical morphology via truncated umbrae. J. Vis. Commun. Image Represent. Edward R. Dougherty
1990	—	`conf`	Hausdorf-metric interpretation of convergence in the Matheron topology for binary mathematical morphology. ICPR (1) Edward R. Dougherty
1990	C	`conf`	Minimal search for the optimal mean-square digital gray-scale morphological filter. VCIP Edward R. Dougherty
1989	A*	`conf`	The dual representation of gray-scale morphological filters. CVPR Edward R. Dougherty
1988	A*	`conf`	A robust image processing language in the context of image algebra. CVPR Edward R. Dougherty, Paramjit S. Sehdev
1988	A*	`conf`	Closed-form representation of convolution, dilation, and erosion in the context of image algebra. CVPR Edward R. Dougherty, Charles R. Giardina
1988	—	`book`	Mathematical methods for artificial intelligence and autonomous systems. Edward R. Dougherty, Charles R. Giardina
1988	J	`jnl`	Morphology on umbra Matrices. Int. J. Pattern Recognit. Artif. Intell. Edward R. Dougherty, Charles R. Giardina