Edward C. Uberbacher

28 papers A 4B 3Journal 16Unranked 5
YearRankTypeTitle / Venue / Authors
2016 J jnl
MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression.
PLoS Comput. Biol.
Steven W. Paugh, David R. Coss, Ju Bao, Lucas T. Laudermilk, Christy R. Grace, Antonio M. Ferreira, M. Brett Waddell, Granger Ridout, Deanna Naeve, Michael R. Leuze, Philip F. LoCascio, John C. Panetta, Mark R. Wilkinson, Ching-Hon Pui, Clayton W. Naeve, Edward C. Uberbacher, Erik J. Bonten, William E. Evans
2012 J jnl
BESC knowledgebase public portal.
Bioinform.
Mustafa H. Syed, Tatiana V. Karpinets, Morey Parang, Michael R. Leuze, Byung-Hoon Park, Doug Hyatt, Steven D. Brown, Steve Moulton, Michael D. Galloway, Edward C. Uberbacher
2012 J jnl
Gene and translation initiation site prediction in metagenomic sequences.
Bioinform.
Doug Hyatt, Philip F. LoCascio, Loren J. Hauser, Edward C. Uberbacher
2003 — conf
A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST.
CSB
Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu
2003 J jnl
Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection.
Bioinform.
Chandrasegaran Narasimhan, Philip F. LoCascio, Edward C. Uberbacher
2003 — conf
Computing for the DOE Genomes to Life Program.
CSB
Edward C. Uberbacher, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Marvin Frazier
2003 — conf
Stepping Up the Pace of Discovery: the Genomes to Life Program.
CSB
Marvin Frazier, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Edward C. Uberbacher
2000 J jnl
Sequence-structure specificity of a knowledge based energy function at the secondary structure level.
Bioinform.
Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher
1998 B conf
A new method for modeling and solving the protein fold recognition problem (extended abstract).
RECOMB
Ying Xu, Dong Xu, Edward C. Uberbacher
1998 J jnl
A segmentation algorithm for noisy images: Design and evaluation.
Pattern Recognit. Lett.
Ying Xu, Victor Olman, Edward C. Uberbacher
1998 J jnl
An Efficient Computational Method for Globally Optimal Threading.
J. Comput. Biol.
Ying Xu, Dong Xu, Edward C. Uberbacher
1997 J jnl
2D image segmentation using minimum spanning trees.
Image Vis. Comput.
Ying Xu, Edward C. Uberbacher
1997 J jnl
Automated Gene Identification in Large-Scale Genomic Sequences.
J. Comput. Biol.
Ying Xu, Edward C. Uberbacher
1997 A conf
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags.
ISMB
Ying Xu, Richard J. Mural, Edward C. Uberbacher
1997 B conf
Reference-based gene model prediction on DNA contigs (extended abstract).
RECOMB
Ying Xu, Edward C. Uberbacher
1996 J jnl
A polynomial-time algorithm for a class of protein threading problems.
Comput. Appl. Biosci.
Ying Xu, Edward C. Uberbacher
1996 J jnl
Alignments of DNA and protein sequences containing frameshift errors.
Comput. Appl. Biosci.
Xiaojun Guan, Edward C. Uberbacher
1996 J jnl
An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions.
J. Comput. Biol.
Ying Xu, Richard J. Mural, Edward C. Uberbacher
1996 J jnl
Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence.
Comput. Chem.
Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher
1996 J jnl
GRAIL: a multi-agent neural network system for gene identification.
Proc. IEEE
Ying Xu, Richard J. Mural, J. Ralph Einstein, Manesh B. Shah, Edward C. Uberbacher
1996 A conf
Gene Prediction by Pattern Recognition and Homology Search.
ISMB
Ying Xu, Edward C. Uberbacher
1995 J jnl
Correcting sequencing errors in DNA coding regions using a dynamic programming approach.
Comput. Appl. Biosci.
Ying Xu, Richard J. Mural, Edward C. Uberbacher
1995 A conf
Predicting Protein Folding Classes without Overly Relying on Homology.
ISMB
Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher
1995 — conf
Sequence comparison on a cluster of workstations using the PVM system.
IPPS
Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher
1995 B conf
Use of Neural Networks for Prediction of Graft Failure following Liver Transplantation.
CBMS
Sherri Matis, Howard Doyle, Ignazio Marino, Richard J. Mural, Edward C. Uberbacher
1994 A conf
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence.
ISMB
Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher
1994 J jnl
Constructing gene models from accurately predicted exons: an application of dynamic programming.
Comput. Appl. Biosci.
Ying Xu, Richard J. Mural, Edward C. Uberbacher
1991 — conf
On Parallel Search of DNA Sequence Databases.
PP
Xiaojun Guan, Richard J. Mural, Reinhold Mann, Edward C. Uberbacher