Edmon Begoli - RankMe

52 papers A* 1A 1Journal 25Unranked 24

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	SAIGE-GPU: accelerating genome- and phenome-wide association studies using GPUs. Bioinform. Alex Rodriguez, Youngdae Kim, Tarak Nath Nandi, Karl Keat, Rachit Kumar, Mitchell Conery, Rohan Bhukar, Molei Liu, John Hessington, Ketan Maheshwari, VA Million Veteran Program, Edmon Begoli, Georgia Tourassi, Pradeep Natarajan, Benjamin F. Voight, John Michael Gaziano, Scott M. Damrauer, Katherine P. Liao, Wei Zhou, Jennifer E. Huffman, Anurag Verma, Ravi K. Madduri
2026	J	`jnl`	Visual Word Sense Disambiguation with CLIP through Dual-Channel Text Prompting and Image Augmentations. CoRR Shamik Bhattacharya, Daniel Perkins, Yaren Dogan, Vineeth Konjeti, Sudarshan Srinivasan, Edmon Begoli
2025	J	`jnl`	ARCH: Large-scale knowledge graph via aggregated narrative codified health records analysis. J. Biomed. Informatics Ziming Gan, Doudou Zhou, Everett Neil Rush, Vidul Ayakulangara Panickan, Yuk-Lam Ho, George Ostrouchov, Zhiwei Xu, Shuting Shen, Xin Xiong, Kimberly F. Greco, Chuan Hong, Clara-Lea Bonzel, Jun Wen, Lauren Costa, Tianrun Cai, Edmon Begoli, Zongqi Xia, John Michael Gaziano, Katherine P. Liao, Kelly Cho, Tianxi Cai, Junwei Lu
2025	J	`jnl`	Adversarial Binaries: AI-guided Instrumentation Methods for Malware Detection Evasion. ACM Comput. Surv. Luke Koch, Edmon Begoli
2025	J	`jnl`	DOME: Directional medical embedding vectors from Electronic Health Records. J. Biomed. Informatics Jun Wen, Hao Xue, Everett Neil Rush, Vidul Ayakulangara Panickan, Tianrun Cai, Doudou Zhou, Yuk-Lam Ho, Lauren Costa, Edmon Begoli, Chuan Hong, John Michael Gaziano, Kelly Cho, Katherine P. Liao, Junwei Lu, Tianxi Cai
2025	J	`jnl`	Reliability, Resiliency, and Responsibility: A Framework for Addressing Security Concerns in Large Language Models. SN Comput. Sci. Linsey Passarella, Edmon Begoli, Colin Smith, Amir Sadovnik
2024	J	`jnl`	A Compound Data Poisoning Technique with Significant Adversarial Effects on Transformer-based Sentiment Classification Tasks. ACM J. Data Inf. Qual. Edmon Begoli, Maria Mahbub, Linsey Passarella, Sudarshan Srinivasan
2024	—	`conf`	Semantic Stealth: Crafting Covert Adversarial Patches for Sentiment Classifiers Using Large Language Models. AISec@CCS Camila Roa, Maria Mahbub, Sudarshan Srinivasan, Edmon Begoli, Amir Sadovnik
2023	J	`jnl`	Effects of Real-Life Traffic Sign Alteration on YOLOv7- an Object Recognition Model. CoRR Farhin Farhad Riya, Shahinul Hoque, Md. Saif Hassan Onim, Edward Michaud, Edmon Begoli
2023	J	`jnl`	Multimodal representation learning for predicting molecule-disease relations. Bioinform. Jun Wen, Xiang Zhang, Everett Neil Rush, Vidul Ayakulangara Panickan, Xingyu Li, Tianrun Cai, Doudou Zhou, Yuk-Lam Ho, Lauren Costa, Edmon Begoli, Chuan Hong, John Michael Gaziano, Kelly Cho, Junwei Lu, Katherine P. Liao, Marinka Zitnik, Tianxi Cai
2023	—	`conf`	Poster: Cognitive Cyber - Dynamic, Adaptive Cyber Defense Systems for Massively Distributed, Autonomous, and Ad-hoc Computing Environments. DEBS Edmon Begoli, Edmon Meyer, Pablo Moriano, Sean Oesch
2023	—	`conf`	Poster: StreamToxWatch - Data Poisoning Detector in Distributed, Event-based Environments. DEBS Edmon Begoli
2023	J	`jnl`	Question-Answering System Extracts Information on Injection Drug Use from Clinical Progress Notes. CoRR Maria Mahbub, Ian Goethert, Ioana Danciu, Kathryn Knight, Sudarshan Srinivasan, Suzanne Tamang, Karine Rozenberg-Ben-Dror, Hugo Solares, Susana B. Martins, Edmon Begoli, Gregory D. Peterson
2023	J	`jnl`	cpgQA: A Benchmark Dataset for Machine Reading Comprehension Tasks on Clinical Practice Guidelines and a Case Study Using Transfer Learning. IEEE Access Maria Mahbub, Edmon Begoli, Susana B. Martins, Alina Peluso, Suzanne Tamang, Gregory D. Peterson
2022	J	`jnl`	BioADAPT-MRC: Adversarial Learning-based Domain Adaptation Improves Biomedical Machine Reading Comprehension Task. CoRR Maria Mahbub, Sudarshan Srinivasan, Edmon Begoli, Gregory D. Peterson
2022	J	`jnl`	BioADAPT-MRC: adversarial learning-based domain adaptation improves biomedical machine reading comprehension task. Bioinform. Maria Mahbub, Sudarshan Srinivasan, Edmon Begoli, Gregory D. Peterson
2022	A*	`conf`	Improving Efficiency and Robustness of Transformer-based Information Retrieval Systems. SIGIR Edmon Begoli, Sudarshan Srinivasan, Maria Mahbub
2021	—	`conf`	A Lakehouse Architecture for the Management and Analysis of Heterogeneous Data for Biomedical Research and Mega-biobanks. IEEE BigData Edmon Begoli, Ian Goethert, Kathryn Knight
2021	J	`jnl`	Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data. npj Digit. Medicine Chuan Hong, Everett Neil Rush, Molei Liu, Doudou Zhou, Jiehuan Sun, Aaron Sonabend W., Victor M. Castro, Petra Schubert, Vidul Ayakulangara Panickan, Tianrun Cai, Lauren Costa, Zeling He, Nicholas B. Link, Ronald G. Hauser, John Michael Gaziano, Shawn N. Murphy, George Ostrouchov, Yuk-Lam Ho, Edmon Begoli, Junwei Lu, Kelly Cho, Katherine P. Liao, Tianxi Cai
2021	—	`conf`	Nomen est Omen - The Role of Signatures in Ascribing Email Author Identity with Transformer Neural Networks. SP (Workshops) Sudarshan Srinivasan, Edmon Begoli, Maria Mahbub, Kathryn Knight
2021	—	`conf`	Performance Profile of Transformer Fine-Tuning in Multi-GPU Cloud Environments. IEEE BigData Edmon Begoli, Seung-Hwan Lim, Sudarshan Srinivasan
2021	J	`jnl`	The Sensitivity of Word Embeddings-based Author Detection Models to Semantic-preserving Adversarial Perturbations. CoRR Jeremiah Duncan, Fabian Fallas, Chris Gropp, Emily Herron, Maria Mahbub, Paula Olaya, Eduardo Ponce, Tabitha K. Samuel, Daniel Schultz, Sudarshan Srinivasan, Maofeng Tang, Viktor Zenkov, Quan Zhou, Edmon Begoli
2021	J	`jnl`	Watermarks in Stream Processing Systems: Semantics and Comparative Analysis of Apache Flink and Google Cloud Dataflow. Proc. VLDB Endow. Edmon Begoli, Tyler Akidau, Slava Chernyak, Fabian Hueske, Kathryn Knight, Kenneth L. Knowles, Daniel Mills, Dan Sotolongo
2021	J	`jnl`	What Clinical Trials Can Teach Us about the Development of More Resilient AI for Cybersecurity. CoRR Edmon Begoli, Robert A. Bridges, Sean Oesch, Kathryn Knight
2020	J	`jnl`	AI reflections in 2019. Nat. Mach. Intell. Alexander S. Rich, Cynthia Rudin, David M. P. Jacoby, Robin Freeman, Oliver R. Wearn, Henry Shevlin, Kanta Dihal, Seán S. ÓhÉigeartaigh, James Butcher, Marco Lippi, Przemyslaw Palka, Paolo Torroni, Shannon Wongvibulsin, Edmon Begoli, Gisbert Schneider, Stephen Cave, Mona Sloane, Emanuel Moss, Iyad Rahwan, Ken Goldberg, David Howard, Luciano Floridi, Jack Stilgoe
2020	—	`conf`	The Transformers for Polystores - The Next Frontier for Polystore Research. Poly/DMAH@VLDB Edmon Begoli, Sudarshan Srinivasan, Maria Mahbub
2020	J	`jnl`	Unified Medical Language System resources improve sieve-based generation and Bidirectional Encoder Representations from Transformers (BERT)-based ranking for concept normalization. J. Am. Medical Informatics Assoc. Dongfang Xu, Manoj Gopale, Jiacheng Zhang, Kris Brown, Edmon Begoli, Steven Bethard
2019	J	`jnl`	A minimal set of physiomarkers in continuous high frequency data streams predict adult sepsis onset earlier. Int. J. Medical Informatics Franco van Wyk, Anahita Khojandi, Akram Mohammed, Edmon Begoli, Robert L. Davis, Rishikesan Kamaleswaran
2019	—	`conf`	One SQL to Rule Them All - an Efficient and Syntactically Idiomatic Approach to Management of Streams and Tables. SIGMOD Conference Edmon Begoli, Tyler Akidau, Fabian Hueske, Julian Hyde, Kathryn Knight, Kenneth L. Knowles
2019	J	`jnl`	One SQL to Rule Them All. CoRR Edmon Begoli, Tyler Akidau, Fabian Hueske, Julian Hyde, Kathryn Knight, Kenneth L. Knowles
2019	J	`jnl`	The need for uncertainty quantification in machine-assisted medical decision making. Nat. Mach. Intell. Edmon Begoli, Tanmoy Bhattacharya, Dimitri Kusnezov
2018	—	`conf`	Apache Calcite: A Foundational Framework for Optimized Query Processing Over Heterogeneous Data Sources. SIGMOD Conference Edmon Begoli, Jesús Camacho-Rodríguez, Julian Hyde, Michael J. Mior, Daniel Lemire
2018	J	`jnl`	Apache Calcite: A Foundational Framework for Optimized Query Processing Over Heterogeneous Data Sources. CoRR Edmon Begoli, Jesús Camacho-Rodríguez, Julian Hyde, Michael J. Mior, Daniel Lemire
2018	—	`conf`	Evaluating Text Analytic Frameworks for Mental Health Surveillance. ICDE Workshops Benjamin Mayer, Joshua Arnold, Edmon Begoli, Everett Neil Rush, Michael Drewry, Kris Brown, Eduardo Ponce, Sudarshan Srinivasan
2018	—	`conf`	Improving Quality of Observational Streaming Medical Data by Using Long Short-Term Memory Networks (LSTMs). ICDE Workshops Michael Bowie, Edmon Begoli, Byung H. Park
2018	J	`jnl`	Precision Medicine as an Accelerator for Next Generation Cognitive Supercomputing. CoRR Edmon Begoli, Jim Brase, Bambi DeLaRosa, Penelope Jones, Dimitri Kusnezov, Jason Paragas, Rick Stevens, Frederick H. Streitz, Georgia D. Tourassi
2018	—	`conf`	SynthNotes: A Generator Framework for High-volume, High-fidelity Synthetic Mental Health Notes. IEEE BigData Edmon Begoli, Kris Brown, Sudarshan Srinivasan, Suzanne Tamang
2017	—	`conf`	An Emerging Role for Polystores in Precision Medicine. DMAH@VLDB Edmon Begoli, James Blair Christian, Vijay Gadepally, Stavros Papadopoulos
2017	—	`conf`	An apache calcite-based polystore variation for federated querying of heterogeneous healthcare sources. IEEE BigData Ashwin Kumar Vajantri, Kunwar Deep Singh Toor, Edmon Begoli, Jack Bates
2017	—	`ed.`	Data Management and Analytics for Medicine and Healthcare - Third International Workshop, DMAH 2017, Held at VLDB 2017, Munich, Germany, September 1, 2017, Proceedings DMAH@VLDB Edmon Begoli, Fusheng Wang, Gang Luo
2017	J	`jnl`	The Heidelberg Laureate Forum on the moving frontier between mathematics and computer science. XRDS Edmon Begoli, Vincent Schlegel, Michael Francis Atiyah, Praise Adeyemo, Tim Baarslag
2017	—	`conf`	Towards an LSTM-based Approach for Detection of Temporally Anomalous Data in Medical Datasets. ICIQ Michael Bowie, Edmon Begoli, Byung H. Park, Jeevith Bopaiah
2016	—	`conf`	Real-Time Discovery Services over Large, Heterogeneous and Complex Healthcare Datasets Using Schema-Less, Column-Oriented Methods. BigDataService Edmon Begoli, Ted Dunning, Charlie Frasure
2016	—	`conf`	Towards a heterogeneous, polystore-like data architecture for the US Department of Veteran Affairs (VA) enterprise analytics. IEEE BigData Edmon Begoli, Derek Kistler, Jack Bates
2015	—	`conf`	Integrating apache spark into PBS-Based HPC environments. XSEDE Troy Baer, Paul Peltz Jr., Junqi Yin, Edmon Begoli
2013	—	`conf`	Performance Implications from Sizing a VM on Multi-core Systems: A Data Analytic Application's View. IPDPS Workshops Seung-Hwan Lim, James L. Horey, Yanjun Yao, Edmon Begoli, Qing Cao
2013	—	`conf`	Scenario-driven architecture assessment methodology for large data analysis systems. SysCon Edmon Begoli, Theodore F. Chila, William H. Inmon
2013	A	`conf`	Towards an Integrative Computational Foundation for Applied Behavior Analysis in Early Autism Interventions. AIED Edmon Begoli, Cristi L. Ogle, David F. Cihak, Bruce J. MacLennan
2012	—	`conf`	A short survey on the state of the art in architectures and platforms for large scale data analysis and knowledge discovery from data. WICSA/ECSA Companion Volume Edmon Begoli
2012	—	`conf`	Architectures and platforms for knowledge discovery from data: workshop at WICSA/ECSA 2012. WICSA/ECSA Companion Volume Edmon Begoli
2012	—	`conf`	Big Data Platforms as a Service: Challenges and Approach. HotCloud James L. Horey, Edmon Begoli, Raghul Gunasekaran, Seung-Hwan Lim, James J. Nutaro
2012	—	`conf`	Design Principles for Effective Knowledge Discovery from Big Data. WICSA/ECSA Edmon Begoli, James L. Horey