Eberhard O. Voit

42 papers C 1Journal 40Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Analysis of systemic effects of dioxin on human health through template-and-anchor modeling.
PLoS Comput. Biol.
Carla M. Kumbale, Qiang Zhang, Eberhard O. Voit
2023 J jnl
Polycraft World AI Lab (PAL): An Extensible Platform for Evaluating Artificial Intelligence Agents.
CoRR
Stephen A. Goss, Robert J. Steininger, Dhruv Narayanan, Daniel V. Olivença, Yutong Sun, Peng Qiu, Jim Amato, Eberhard O. Voit, Walter E. Voit, Eric J. Kildebeck
2022 J jnl
Inference of dynamic interaction networks: A comparison between Lotka-Volterra and multivariate autoregressive models.
Frontiers Bioinform.
Daniel V. Olivença, Jacob D. Davis, Eberhard O. Voit
2021 J jnl
A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression.
PLoS Comput. Biol.
Felipe Dalvi-Garcia, Luís L. Fonseca, Ana Tereza Ribeiro de Vasconcelos, Cecilia Hedin-Pereira, Eberhard O. Voit
2020 J jnl
Separable Nonlinear Least-Squares Parameter Estimation for Complex Dynamic Systems.
Complex.
Itai Dattner, Harold J. Ship, Eberhard O. Voit
2019 J jnl
Agent-based modeling of morphogenetic systems: Advantages and challenges.
PLoS Comput. Biol.
Chad M. Glen, Melissa L. Kemp, Eberhard O. Voit
2019 J jnl
Metrics for regulated biochemical pathway systems.
Bioinform.
Jacob D. Davis, Eberhard O. Voit
2019 J jnl
Perspective: Dimensions of the scientific method.
PLoS Comput. Biol.
Eberhard O. Voit
2017 J jnl
Stepwise inference of likely dynamic flux distributions from metabolic time series data.
Bioinform.
Mojdeh Faraji, Eberhard O. Voit
2017 J jnl
Strategies for Comparing Metabolic Profiles: Implications for the Inference of Biochemical Mechanisms from Metabolomics Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhen Qi, Eberhard O. Voit
2015 J jnl
150 Years of the Mass Action Law.
PLoS Comput. Biol.
Eberhard O. Voit, Harald A. Martens, Stig W. Omholt
2015 J jnl
Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast.
PLoS Comput. Biol.
Po-Wei Chen, Luís L. Fonseca, Yusuf A. Hannun, Eberhard O. Voit
2014 J jnl
A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network.
BMC Syst. Biol.
Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Shigehiko Kanaya, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Eberhard O. Voit, Fumihide Shiraishi, Masami Y. Hirai
2014 J jnl
A constrained wavelet smoother for pathway identification tasks in systems biology.
Comput. Chem. Eng.
Sepideh Dolatshahi, Brani Vidakovic, Eberhard O. Voit
2014 J jnl
An Efficient and Very Accurate Method for Calculating Steady-State Sensitivities in Metabolic Reaction Systems.
IEEE ACM Trans. Comput. Biol. Bioinform.
Fumihide Shiraishi, Erika Yoshida, Eberhard O. Voit
2013 J jnl
Coordination of Rapid Sphingolipid Responses to Heat Stress in Yeast.
PLoS Comput. Biol.
Po-Wei Chen, Luís L. Fonseca, Yusuf A. Hannun, Eberhard O. Voit
2013 J jnl
Function and design of the Nox1 system in vascular smooth muscle cells.
BMC Syst. Biol.
Weiwei Yin, Eberhard O. Voit
2012 J jnl
Estimation of dynamic flux profiles from metabolic time series data.
BMC Syst. Biol.
I-Chun Chou, Eberhard O. Voit
2012 J jnl
Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach.
PLoS Comput. Biol.
Yun Lee, Luis Escamilla-Treviño, Richard A. Dixon, Eberhard O. Voit
2011 J jnl
Constructing stochastic models from deterministic process equations by propensity adjustment.
BMC Syst. Biol.
Jialiang Wu, Brani Vidakovic, Eberhard O. Voit
2011 J jnl
Integrative Analysis of Transgenic Alfalfa (
PLoS Comput. Biol.
Yun Lee, Fang Chen, Lina Gallego-Giraldo, Richard A. Dixon, Eberhard O. Voit
2011 J jnl
Statistical Inference Methods for Sparse Biological Time Series Data.
BMC Syst. Biol.
Juliet Ndukum, Luís L. Fonseca, Helena Santos, Eberhard O. Voit, Susmita Datta
2010 J jnl
Impact of Delays and Noise on Dopamine Signal Transduction.
Silico Biol.
Jialiang Wu, Zhen Qi, Eberhard O. Voit
2010 J jnl
The internal state of medium spiny neurons varies in response to different input signals.
BMC Syst. Biol.
Zhen Qi, Gary W. Miller, Eberhard O. Voit
2010 J jnl
The role of systems modeling in drug discovery and predictive health.
J. Cheminformatics
Eberhard O. Voit
2009 J jnl
Estimating parameters for generalized mass action models with connectivity information.
BMC Bioinform.
Chih-Lung Ko, Eberhard O. Voit, Feng-Sheng Wang
2009 J jnl
Identification of neutral biochemical network models from time series data.
BMC Syst. Biol.
Marco Vilela, Susana Vinga, Marco Maia, Eberhard O. Voit, Jonas S. Almeida
2008 J jnl
Parameter optimization in S-system models.
BMC Syst. Biol.
Marco Vilela, I-Chun Chou, Susana Vinga, Ana Tereza Ribeiro de Vasconcelos, Eberhard O. Voit, Jonas S. Almeida
2008 J jnl
System estimation from metabolic time-series data.
Bioinform.
Gautam Goel, I-Chun Chou, Eberhard O. Voit
2007 J jnl
Automated smoother for the numerical decoupling of dynamics models.
BMC Bioinform.
Marco Vilela, Carlos Cristiano H. Borges, Susana Vinga, Ana Tereza Ribeiro de Vasconcelos, Helena Santos, Eberhard O. Voit, Jonas S. Almeida
2006 J jnl
A multivariate prediction model for microarray cross-hybridization.
BMC Bioinform.
Yian Ann Chen, Cheng-Chung Chou, Xinghua Lu, Elizabeth H. Slate, Konan Peck, Wenying Xu, Eberhard O. Voit, Jonas S. Almeida
2006 J jnl
An Automated Procedure for the Extraction of Metabolic Network Information from Time Series Data.
J. Bioinform. Comput. Biol.
Simeone Marino, Eberhard O. Voit
2006 J jnl
Construction of bivariate S-distributions with copulas.
Comput. Stat. Data Anal.
Lining Yu, Eberhard O. Voit
2006 J jnl
GS-distributions: A new family of distributions for continuous unimodal variables.
Comput. Stat. Data Anal.
J. M. Muiño, Eberhard O. Voit, Albert Sorribas
2005 J jnl
Parameter estimation in modulated, unbranched reaction chains within biochemical systems.
Comput. Biol. Chem.
Raman Lall, Eberhard O. Voit
2004 J jnl
Challenges for the identification of biological systems from in vivo time series data.
Silico Biol.
Eberhard O. Voit, Simeone Marino, Raman Lall
2004 J jnl
Decoupling dynamical systems for pathway identification from metabolic profiles.
Bioinform.
Eberhard O. Voit, Jonas S. Almeida
2003 C conf
A mixed integer moving horizon formulation for prioritized objective inferential control of a bioprocess system.
ACC
C. E. Long, Eberhard O. Voit, Edward P. Gatzke
2002 J jnl
Solution of a two-point boundary value model of immobilized enzyme reactions, using an S-system-based root-finding method.
Appl. Math. Comput.
Fumihide Shiraishi, Eberhard O. Voit
2000 J jnl
A 7th-grade science project casts doubt on the standard explanation of the Gaussian plume model for seepage through soil.
Environ. Model. Softw.
Benedict F. Voit, Eberhard O. Voit
2000 J jnl
Biochemical systems analysis of genome-wide expression data.
Bioinform.
Eberhard O. Voit, Tomas Radivoyevitch
1995 — conf
Simulation and Steady-State Optimization of Integrated Biochemical Systems: Theory and Application in Biotechnology.
EUROSIM
Eberhard O. Voit, Néstor V. Torres