E. Michael Gertz

15 papers A 1B 1Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.
Bioinform.
Haoyun Lei, E. Michael Gertz, Alejandro A. Schäffer, Xuecong Fu, Yifeng Tao, Kerstin Heselmeyer-Haddad, Irianna Torres, Guibo Li, Liqin Xu, Yong Hou, Kui Wu, Xulian Shi, Michael Dean, Thomas Ried, Russell Schwartz
2020 J jnl
PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
Bioinform.
Erfan Sadeqi Azer, Farid Rashidi Mehrabadi, Salem Malikic, Xuan Cindy Li, Osnat Bartok, Kevin Litchfield, Ronen Levy, Yardena Samuels, Alejandro A. Schäffer, E. Michael Gertz, Chi-Ping Day, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Glenn Merlino, Funda Ergün, Süleyman Cenk Sahinalp
2020 J jnl
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.
J. Comput. Biol.
Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Xulian Shi, Kui Wu, Guibo Li, Liqin Xu, Yong Hou, Michael Dean, Russell Schwartz
2019 B conf
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.
RECOMB
Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Xulian Shi, Kui Wu, Guibo Li, Liqin Xu, Yong Hou, Michael Dean, Russell Schwartz
2018 — conf
Tumor Copy Number Data Deconvolution Integrating Bulk and Single-cell Sequencing Data.
ICCABS
Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Russell Schwartz
2015 J jnl
Inferring models of multiscale copy number evolution for single-tumor phylogenetics.
Bioinform.
Salim Akhter Chowdhury, E. Michael Gertz, Darawalee Wangsa, Kerstin Heselmeyer-Haddad, Thomas Ried, Alejandro A. Schäffer, Russell Schwartz
2010 J jnl
Using an iterative linear solver in an interior-point method for generating support vector machines.
Comput. Optim. Appl.
E. Michael Gertz, Joshua D. Griffin
2008 A conf
The effectiveness of position- and composition-specific gap costs for protein similarity searches.
ISMB
Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu
2006 J jnl
A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences.
J. Comput. Biol.
Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala
2006 J jnl
WindowMasker: window-based masker for sequenced genomes.
Bioinform.
Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala
2004 J jnl
A primal-dual trust region algorithm for nonlinear optimization.
Math. Program.
E. Michael Gertz, Philip E. Gill
2004 J jnl
A quasi-Newton trust-region method.
Math. Program.
E. Michael Gertz
2004 J jnl
A starting point strategy for nonlinear interior methods.
Appl. Math. Lett.
E. Michael Gertz, Jorge Nocedal, Annick Sartenaer
2003 J jnl
Object-oriented software for quadratic programming.
ACM Trans. Math. Softw.
E. Michael Gertz, Stephen J. Wright
2001 J jnl
Users Guide for SnadiOpt: A Package Adding Automatic Differentiation to Snopt
CoRR
E. Michael Gertz, Philip E. Gill, Julia Muetherig