Dusanka Janezic

56 papers Journal 52Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Advanced clique algorithms for protein product graphs.
Art Discret. Appl. Math.
Janez Konc, Dusanka Janezic
2022 J jnl
ProBiS-Dock: A Hybrid Multitemplate Homology Flexible Docking Algorithm Enabled by Protein Binding Site Comparison.
J. Chem. Inf. Model.
Janez Konc, Samo Lesnik, Blaz Skrlj, Matej Sova, Matic Proj, Damijan Knez, Stanislav Gobec, Dusanka Janezic
2022 J jnl
ProBiS-Fold Approach for Annotation of Human Structures from the AlphaFold Database with No Corresponding Structure in the PDB to Discover New Druggable Binding Sites.
J. Chem. Inf. Model.
Janez Konc, Dusanka Janezic
2021 J jnl
ProBiS-Dock Database: A Web Server and Interactive Web Repository of Small Ligand-Protein Binding Sites for Drug Design.
J. Chem. Inf. Model.
Janez Konc, Samo Lesnik, Blaz Skrlj, Dusanka Janezic
2019 J jnl
Discovery of Novel Potential Human Targets of Resveratrol by Inverse Molecular Docking.
J. Chem. Inf. Model.
Katarina Kores, Samo Lesnik, Urban Bren, Dusanka Janezic, Janez Konc
2017 J jnl
BoBER: web interface to the base of bioisosterically exchangeable replacements.
J. Cheminformatics
Samo Lesnik, Blaz Skrlj, Nika Erzen, Urban Bren, Stanislav Gobec, Janez Konc, Dusanka Janezic
2017 J jnl
GenProBiS: web server for mapping of sequence variants to protein binding sites.
Nucleic Acids Res.
Janez Konc, Blaz Skrlj, Nika Erzen, Tanja Kunej, Dusanka Janezic
2017 J jnl
Identification of Conserved Water Sites in Protein Structures for Drug Design.
J. Chem. Inf. Model.
Marko Jukic, Janez Konc, Stanislav Gobec, Dusanka Janezic
2016 J jnl
H274Y's Effect on Oseltamivir Resistance: What Happens Before the Drug Enters the Binding Site.
J. Chem. Inf. Model.
Muhammad Yusuf, Nornisah Mohamed, Suriyati Mohamad, Dusanka Janezic, K. V. Damodaran, Habibah A. Wahab
2016 J jnl
Ligand-based virtual screening interface between PyMOL and LiSiCA.
J. Cheminformatics
Athira Dilip, Samo Lesnik, Tanja Stular, Dusanka Janezic, Janez Konc
2015 J jnl
LiSiCA: A Software for Ligand-Based Virtual Screening and Its Application for the Discovery of Butyrylcholinesterase Inhibitors.
J. Chem. Inf. Model.
Samo Lesnik, Tanja Stular, Boris Brus, Damijan Knez, Stanislav Gobec, Dusanka Janezic, Janez Konc
2015 J jnl
Modeling enzyme-ligand binding in drug discovery.
J. Cheminformatics
Janez Konc, Samo Lesnik, Dusanka Janezic
2015 J jnl
Molecular dynamics to enhance structure-based virtual screening on cathepsin B.
J. Comput. Aided Mol. Des.
Mitja Ogrizek, Samo Turk, Samo Lesnik, Izidor Sosic, Milan Hodoscek, Bojana Mirkovic, Janko Kos, Dusanka Janezic, Stanislav Gobec, Janez Konc
2015 J jnl
ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.
J. Chem. Inf. Model.
Janez Konc, Benjamin T. Miller, Tanja Stular, Samo Lesnik, H. Lee Woodcock III, Bernard R. Brooks, Dusanka Janezic
2014 J jnl
ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites.
Nucleic Acids Res.
Janez Konc, Dusanka Janezic
2013 J jnl
Exact Parallel Maximum Clique Algorithm for General and Protein Graphs.
J. Chem. Inf. Model.
Matjaz Depolli, Janez Konc, Kati Rozman, Roman Trobec, Dusanka Janezic
2013 J jnl
Structurally Conserved Binding Sites of Hemagglutinin as Targets for Influenza Drug and Vaccine Development.
J. Chem. Inf. Model.
Muhammad Yusuf, Janez Konc, Sy Bing Choi, Joanna Trykowska Konc, Nurul Bahiyah Ahmad Khairudin, Dusanka Janezic, Habibah A. Wahab
2013 J jnl
Structure-Based Function Prediction of Uncharacterized Protein Using Binding Sites Comparison.
PLoS Comput. Biol.
Janez Konc, Milan Hodoscek, Mitja Ogrizek, Joanna Trykowska Konc, Dusanka Janezic
2012 J jnl
Correlating Protein Hot Spot Surface Analysis Using ProBiS with Simulated Free Energies of Protein-Protein Interfacial Residues.
J. Chem. Inf. Model.
Nejc Carl, Milan Hodoscek, Blaz Vehar, Janez Konc, Bernard R. Brooks, Dusanka Janezic
2012 J jnl
Parallel-ProBiS: Fast parallel algorithm for local structural comparison of protein structures and binding sites.
J. Comput. Chem.
Janez Konc, Matjaz Depolli, Roman Trobec, Kati Rozman, Dusanka Janezic
2012 J jnl
ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins.
Nucleic Acids Res.
Janez Konc, Dusanka Janezic
2012 J jnl
ProBiS-Database: Precalculated Binding Site Similarities and Local Pairwise Alignments of PDB Structures.
J. Chem. Inf. Model.
Janez Konc, Tomo Cesnik, Joanna Trykowska Konc, Matej Penca, Dusanka Janezic
2011 J jnl
The distributed diagonal force decomposition method for parallelizing molecular dynamics simulations.
J. Comput. Chem.
Urban Borstnik, Benjamin T. Miller, Bernard R. Brooks, Dusanka Janezic
2010 J jnl
ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment.
Bioinform.
Janez Konc, Dusanka Janezic
2010 J jnl
ProBiS: a web server for detection of structurally similar protein binding sites.
Nucleic Acids Res.
Janez Konc, Dusanka Janezic
2010 J jnl
Protein-Protein Binding Site Prediction by Local Structural Alignment.
J. Chem. Inf. Model.
Nejc Carl, Janez Konc, Blaz Vehar, Dusanka Janezic
2009 — ch.
Topological Complexity of Molecules.
Encyclopedia of Complexity and Systems Science
Dusanka Janezic, Ante Milicevic, Sonja Nikolic, Nenad Trinajstic
2008 J jnl
New all-atom force field for molecular dynamics simulation of an AlPO
J. Comput. Chem.
Matej Praprotnik, Stanko Hocevar, Milan Hodoscek, Matej Penca, Dusanka Janezic
2008 J jnl
Protein Surface Conservation in Binding Sites.
J. Chem. Inf. Model.
Nejc Carl, Janez Konc, Dusanka Janezic
2007 — conf
A Branch and Bound Algorithm for Matching Protein Structures.
ICANNGA (2)
Janez Konc, Dusanka Janezic
2007 J jnl
Cluj and Related Polynomials Applied in Correlating Studies.
J. Chem. Inf. Model.
Mircea V. Diudea, Aniela E. Vizitiu, Dusanka Janezic
2007 J jnl
Protein-Protein Binding-Sites Prediction by Protein Surface Structure Conservation.
J. Chem. Inf. Model.
Janez Konc, Dusanka Janezic
2006 J jnl
New force field for calcium binding sites in annexin-membrane complexes.
J. Comput. Chem.
Franci Merzel, Milan Hodoscek, Dusanka Janezic, Alain Sanson
2006 J jnl
Retro-Leapfrog and Related Retro Map Operations.
J. Chem. Inf. Model.
Aniela E. Vizitiu, Mircea V. Diudea, Sonja Nikolic, Dusanka Janezic
2005 J jnl
Molecular Dynamics Integration Meets Standard Theory of Molecular Vibrations.
J. Chem. Inf. Model.
Matej Praprotnik, Dusanka Janezic
2005 J jnl
Periodic Cages.
J. Chem. Inf. Model.
Mircea V. Diudea, Csaba L. Nagy, Ioan Silaghi-Dumitrescu, Ante Graovac, Dusanka Janezic, Drazen Vikic-Topic
2005 J jnl
Symplectic Molecular Dynamics Simulations on Specially Designed Parallel Computers.
J. Chem. Inf. Model.
Urban Borstnik, Dusanka Janezic
2005 J jnl
The Regional Biophysics Meeting March 16-20, 2005, Zrece, Slovenia.
J. Chem. Inf. Model.
Dusanka Janezic
2004 J jnl
Enumeration of Conjugated Circuits in Nanotubes.
J. Chem. Inf. Model.
István Lukovits, Dusanka Janezic
2004 J jnl
Improving the Performance of Molecular Dynamics Simulations on Parallel Clusters.
J. Chem. Inf. Model.
Urban Borstnik, Milan Hodoscek, Dusanka Janezic
2004 J jnl
Reviews in Computational Chemistry. Volume 19 Edited by Kenny B. Lipkowitz, Raima Larter, and Thomas R. Cundari. Wiley-VCH 2003, ISBN 0-471-23585-7.
J. Chem. Inf. Model.
Urban Borstnik, Dusanka Janezic
2004 J jnl
The Eighteenth International Course & Conference on the Interfaces among Mathematics, Chemistry & Computer Sciences June 23-28, 2003 Dubrovnik, Croatia.
J. Chem. Inf. Model.
Dusanka Janezic, Ante Graovac
2003 J jnl
Molecular Dynamics Integration Time Step Dependence of the Split Integration Symplectic Method on System Density.
J. Chem. Inf. Comput. Sci.
Dusanka Janezic, Matej Praprotnik
1999 — ch.
Long Time Step MD Simulations Using Split Integration Symplectic Method.
Computational Molecular Dynamics
Dusanka Janezic, Franci Merzel
1997 — conf
Computational Complexity of Split Symplectic MD Integration Method.
PARCO
Roman Trobec, Franci Merzel, Dusanka Janezic
1997 J jnl
Split Integration Symplectic Method for Molecular Dynamics Integration.
J. Chem. Inf. Comput. Sci.
Dusanka Janezic, Franci Merzel
1997 J jnl
The Complexity of Parallel Symplectic Molecular Dynamics Algorithms.
J. Chem. Inf. Comput. Sci.
Roman Trobec, Franci Merzel, Dusanka Janezic
1995 J jnl
An Efficient Symplectic Integration Algorithm for Molecular Dynamics Simulations.
J. Chem. Inf. Comput. Sci.
Dusanka Janezic, Franci Merzel
1995 J jnl
Comparison of Parallel Verlet and Implicit Runge-Kutta Methods for Molecular Dynamics Integration.
J. Chem. Inf. Comput. Sci.
Roman Trobec, Dusanka Janezic
1995 J jnl
Harmonic Analysis of Large Systems. I. Methodology.
J. Comput. Chem.
Bernard R. Brooks, Dusanka Janezic, Martin Karplus
1995 J jnl
Harmonic Analysis of Large Systems. II. Comaprison of Different Protein Models.
J. Comput. Chem.
Dusanka Janezic, Martin Karplus
1995 J jnl
Harmonic Analysis of Large Systems. III. Comparison with Molecular Dynamics.
J. Comput. Chem.
Dusanka Janezic, Richard M. Venable, Martin Karplus
1994 J jnl
Parallelization of an Implicit Runge-Kutta Method for Molecular Dynamics Integration.
J. Chem. Inf. Comput. Sci.
Dusanka Janezic, Roman Trobec
1993 J jnl
Implicit Runge-Kutta method for molecular dynamics integration.
J. Chem. Inf. Comput. Sci.
Dusanka Janezic, Bojan Orel
1993 J jnl
Parallel Algorithm for Molecular Dynamics Integration.
Parallel Comput.
Roman Trobec, Izidor Jerebic, Dusanka Janezic
1990 J jnl
Graphical handling of wide-ranging data: graphing of photon cross-section data.
J. Chem. Inf. Comput. Sci.
Dusanka Janezic, Matej Penca, B. B. Lide, David R. Lide