Douglas L. Brutlag

50 papers A* 1A 9B 4C 3Misc 2Journal 26Unranked 4

Year	Rank	Type	Title / Venue / Authors
2007	J	`jnl`	Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. J. Comput. Biol. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe
2006	J	`jnl`	Development and validation of a consistency based multiple structure alignment algorithm. Bioinform. Jessica Ebert, Douglas L. Brutlag
2006	—	`conf`	MotifCut: regulatory motifs finding with maximum density subgraphs. ISMB (Supplement of Bioinformatics) Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou
2006	B	`conf`	Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe
2006	—	`ch.`	Sequence Motifs: Highly Predictive Features of Protein Function. Feature Extraction Asa Ben-Hur, Douglas L. Brutlag
2005	J	`jnl`	Homology Modeling of a Human Glycine Alpha 1 Receptor Reveals a Plausible Anesthetic Binding Site. J. Chem. Inf. Model. Edward J. Bertaccini, Jessica Shapiro, Douglas L. Brutlag, James R. Trudell
2005	J	`jnl`	eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity. Nucleic Acids Res. Qiaojuan Jane Su, Lin Lu, Serge Saxonov, Douglas L. Brutlag
2004	J	`jnl`	A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Res. Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, Xiaole Shirley Liu
2004	J	`jnl`	Computational functional genomics. IEEE Signal Process. Mag. Mike P. Liang, Olga G. Troyanskaya, Alain Laederach, Douglas L. Brutlag, Russ B. Altman
2004	J	`jnl`	FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web. Nucleic Acids Res. Jessica Shapiro, Douglas L. Brutlag
2004	—	`conf`	Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale. NIPS Haidong Wang, Eran Segal, Asa Ben-Hur, Daphne Koller, Douglas L. Brutlag
2003	J	`jnl`	3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs. Nucleic Acids Res. Steven P. Bennett, Lin Lu, Douglas L. Brutlag
2003	J	`jnl`	3MOTIF: visualizing conserved protein sequence motifs in the protein structure database. Bioinform. Steven P. Bennett, Craig G. Nevill-Manning, Douglas L. Brutlag
2003	Misc	`conf`	Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. Pacific Symposium on Biocomputing Mike P. Liang, Douglas L. Brutlag, Russ B. Altman
2003	—	`conf`	Automatic Construction of 3D Structural Motifs for Protein Function Prediction. CSB Mike P. Liang, Douglas L. Brutlag, Russ B. Altman
2003	—	`conf`	Remote homology detection: a motif based approach. ISMB (Supplement of Bioinformatics) Asa Ben-Hur, Douglas L. Brutlag
2003	J	`jnl`	Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. J. Comput. Biol. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma
2003	J	`jnl`	WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. Nucleic Acids Res. Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman
2002	C	`conf`	Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe
2002	C	`conf`	Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe
2002	B	`conf`	Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe
2002	C	`conf`	Using robotics to fold proteins and dock ligands. ECCB Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe
2001	Misc	`conf`	BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes. Pacific Symposium on Biocomputing X. Liu, Douglas L. Brutlag, Jun S. Liu
2001	A*	`conf`	Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe
2001	J	`jnl`	The EMOTIF database. Nucleic Acids Res. Jimmy Y. Huang, Douglas L. Brutlag
2000	J	`jnl`	Bayesian Segmentation of Protein Secondary Structure. J. Comput. Biol. Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag
2000	J	`jnl`	Fast probabilistic analysis of sequence function using scoring matrices. Bioinform. Thomas D. Wu, Craig G. Nevill-Manning, Douglas L. Brutlag
1999	A	`conf`	A Motion Planning Approach to Flexible Ligand Binding. ISMB Amit Pal Singh, Jean-Claude Latombe, Douglas L. Brutlag
1999	J	`jnl`	Minimal-Risk Scoring Matrices for Sequence Analysis. J. Comput. Biol. Thomas D. Wu, Craig G. Nevill-Manning, Douglas L. Brutlag
1999	A	`ed.`	Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany ISMB Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas L. Brutlag, Janice I. Glasgow, Hans-Werner Mewes, Ralf Zimmer
1998	J	`jnl`	Regression Analysis of Multiple Protein Structures. J. Comput. Biol. Thomas D. Wu, Scott C. Schmidler, Trevor Hastie, Douglas L. Brutlag
1998	B	`conf`	Regression analysis of multiple protein structures. RECOMB Thomas D. Wu, Trevor Hastie, Scott C. Schmidler, Douglas L. Brutlag
1998	J	`jnl`	Viewpoint: Directions for Clinical Research and Genomic Research into the Next Decade: Implications for Informatics. J. Am. Medical Informatics Assoc. Thomas C. Rindfleisch, Douglas L. Brutlag
1997	A	`conf`	Enumerating and Ranking Discrete Motifs. ISMB Craig G. Nevill-Manning, Komal S. Sethi, Thomas D. Wu, Douglas L. Brutlag
1997	A	`conf`	Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations. ISMB Amit Pal Singh, Douglas L. Brutlag
1996	A	`conf`	Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families. ISMB Thomas D. Wu, Douglas L. Brutlag
1995	A	`conf`	Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques. ISMB Thomas D. Wu, Douglas L. Brutlag
1994	A	`conf`	Discovering Side-Chain Correlations In alpha-Helices. ISMB Tod M. Klingler, Douglas L. Brutlag
1994	J	`jnl`	On Near-Optimal Alignments of Biological Sequences. J. Comput. Biol. Dalit Naor, Douglas L. Brutlag
1994	A	`ed.`	Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA ISMB Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls
1993	J	`jnl`	BLAZE Comput. Chem. Douglas L. Brutlag, Jean-Pierre Dautricourt, Ron Diaz, Jeff Fier, Bruce Moxon, Richard Stamm
1993	A	`conf`	Detection of Correlations in tRNA Sequences with Structural Implications. ISMB Tod M. Klingler, Douglas L. Brutlag
1993	B	`conf`	On Suboptimal Alignments of Biological Sequences. CPM Dalit Naor, Douglas L. Brutlag
1991	J	`jnl`	Knowledge-based simulation of DNA metabolism: prediction of enzyme action. Comput. Appl. Biosci. Douglas L. Brutlag, A. R. Galper, D. H. Millis
1990	J	`jnl`	Improved sensitivity of biological sequence database searches. Comput. Appl. Biosci. Douglas L. Brutlag, Jean-Pierre Dautricourt, S. Maulik, J. Relph
1986	J	`jnl`	BIONET: national computer resource for molecular biology. Nucleic Acids Res. Dennis H. Smith, Douglas L. Brutlag, Peter Friedland, Laurence H. Kedes
1984	J	`jnl`	Rapid searches for complex patterns in biological molecules. Nucleic Acids Res. R. M. Abarbanel, Paul R. Wieneke, E. Mansfield, David A. Jaffe, Douglas L. Brutlag
1982	J	`jnl`	GENESIS, a knowledge-based genetic engineering simulation system for representation of genetic data and experiment planning. Nucleic Acids Res. Peter Friedland, Laurence H. Kedes, Douglas L. Brutlag, Yumi Iwasaki, René Bach
1982	J	`jnl`	MAXAMIZE. A DNA sequencing strategy advisor. Nucleic Acids Res. René Bach, Peter Friedland, Douglas L. Brutlag, Laurence H. Kedes
1982	J	`jnl`	SEQ: a nucleotide sequence analysis and recombination system. Nucleic Acids Res. Douglas L. Brutlag, J. Clayton, Peter Friedland, Laurence H. Kedes