Douglas B. Kell

58 papers A 5B 1C 1Journal 46Unranked 4
YearRankTypeTitle / Venue / Authors
2020 J jnl
DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approach.
J. Cheminformatics
Yash Khemchandani, Stephen O'Hagan, Soumitra Samanta, Neil Swainston, Timothy J. Roberts, Danushka Bollegala, Douglas B. Kell
2018 J jnl
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts.
Bioinform.
Neil Swainston, Mark Dunstan, Adrian J. Jervis, Christopher J. Robinson, Pablo Carbonell, Alan R. Williams, Jean-Loup Faulon, Nigel S. Scrutton, Douglas B. Kell
2018 J jnl
Selenzyme: enzyme selection tool for pathway design.
Bioinform.
Pablo Carbonell, Jerry Wong, Neil Swainston, Eriko Takano, Nicholas J. Turner, Nigel S. Scrutton, Douglas B. Kell, Rainer Breitling, Jean-Loup Faulon
2017 J jnl
Analysis of drug-endogenous human metabolite similarities in terms of their maximum common substructures.
J. Cheminformatics
Steve O'Hagan, Douglas B. Kell
2017 J jnl
CodonGenie: optimised ambiguous codon design tools.
PeerJ Comput. Sci.
Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell
2017 J jnl
CodonGenie: optimised ambiguous codon design tools.
PeerJ Prepr.
Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell
2017 J jnl
Evolutionary algorithms and synthetic biology for directed evolution: commentary on "on the mapping of genotype to phenotype in evolutionary algorithms" by Peter A. Whigham, Grant Dick, and James Maclaurin.
Genet. Program. Evolvable Mach.
Douglas B. Kell
2017 J jnl
What do we need to build explainable AI systems for the medical domain?
CoRR
Andreas Holzinger, Chris Biemann, Constantinos S. Pattichis, Douglas B. Kell
2016 J jnl
Computing exponentially faster: Implementing a nondeterministic universal Turing machine using DNA.
CoRR
Andrew Currin, Konstantin Korovin, Maria Ababi, Katherine Roper, Douglas B. Kell, Philip J. Day, Ross D. King
2015 J jnl
Software review: the KNIME workflow environment and its applications in genetic programming and machine learning.
Genet. Program. Evolvable Mach.
Steve O'Hagan, Douglas B. Kell
2014 J jnl
GeneGenie: optimized oligomer design for directed evolution.
Nucleic Acids Res.
Neil Swainston, Andrew Currin, Philip J. Day, Douglas B. Kell
2013 J jnl
A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text.
Bioinform.
Makoto Miwa, Tomoko Ohta, Rafal Rak, Andrew Rowley, Douglas B. Kell, Sampo Pyysalo, Sophia Ananiadou
2013 J jnl
Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Syst. Biol.
Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère
2012 J jnl
Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets.
Bioinform.
Marie Brown, David C. Wedge, Royston Goodacre, Douglas B. Kell, Philip N. Baker, Louise C. Kenny, Mamas A. Mamas, Ludwig Neyses, Warwick B. Dunn
2012 J jnl
Extracting semantically enriched events from biomedical literature.
BMC Bioinform.
Makoto Miwa, Paul Thompson, John McNaught, Douglas B. Kell, Sophia Ananiadou
2012 J jnl
Improving metabolic flux predictions using absolute gene expression data.
BMC Syst. Biol.
Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine Winder, Douglas B. Kell, Pedro Mendes, Neil Swainston
2012 J jnl
The genetic control of growth rate: a systems biology study in yeast.
BMC Syst. Biol.
Pinar Pir, Alex Gutteridge, Jian Wu, Bharat Rash, Douglas B. Kell, Nianshu Zhang, Stephen G. Oliver
2011 J jnl
Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets.
Bioinform.
Marie Brown, David C. Wedge, Royston Goodacre, Douglas B. Kell, Philip N. Baker, Louise C. Kenny, Mamas A. Mamas, Ludwig Neyses, Warwick B. Dunn
2011 J jnl
Interactions among oscillatory pathways in NF-kappa B signaling.
BMC Syst. Biol.
Yunjiao Wang, Pawel Paszek, Caroline A. Horton, Douglas B. Kell, Michael R. H. White, David S. Broomhead, Mark R. Muldoon
2011 J jnl
Predicting the points of interaction of small molecules in the NF-κB pathway.
BMC Syst. Biol.
Yogendra Patel, Catherine A. Heyward, Michael R. H. White, Douglas B. Kell
2011 J jnl
The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks.
J. Integr. Bioinform.
Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton
2010 J jnl
Arcadia: a visualization tool for metabolic pathways.
Bioinform.
Alice Villéger, Stephen Pettifer, Douglas B. Kell
2010 J jnl
Further developments towards a genome-scale metabolic model of yeast.
BMC Syst. Biol.
Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes
2010 J jnl
Predictive models for population performance on real biological fitness landscapes.
Bioinform.
William Rowe, David C. Wedge, Mark Platt, Douglas B. Kell, Joshua D. Knowles
2010 J jnl
Systematic integration of experimental data and models in systems biology.
BMC Bioinform.
Peter Li, Joseph O. Dada, Daniel Jameson, Irena Spasic, Neil Swainston, Kathleen Carroll, Warwick B. Dunn, Farid Khan, Naglis Malys, Hanan L. Messiha, Evangelos Simeonidis, Dieter Weichart, Catherine Winder, Jill Wishart, David S. Broomhead, Carole A. Goble, Simon J. Gaskell, Douglas B. Kell, Hans V. Westerhoff, Pedro Mendes, Norman W. Paton
2010 J jnl
Utopia documents: linking scholarly literature with research data.
Bioinform.
Terri K. Attwood, Douglas B. Kell, Philip McDermott, James Marsh, Stephen Pettifer, David Thorne
2009 J jnl
Deterministic mathematical models of the cAMP pathway in Saccharomyces cerevisiae.
BMC Syst. Biol.
Thomas Williamson, Jean-Marc Schwartz, Douglas B. Kell, Lubomira Stateva
2009 J jnl
Information management for high content live cell imaging.
BMC Bioinform.
Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton
2009 J jnl
KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways.
Bioinform.
Irena Spasic, Evangelos Simeonidis, Hanan L. Messiha, Norman W. Paton, Douglas B. Kell
2009 J jnl
Visualising biological data: a semantic approach to tool and database integration.
BMC Bioinform.
Steve Pettifer, David Thorne, Philip McDermott, James Marsh, Alice Villéger, Douglas B. Kell, Teresa K. Attwood
2008 J jnl
Automated manipulation of systems biology models using libSBML within Taverna workflows.
Bioinform.
Peter Li, Tom Oinn, Stian Soiland, Douglas B. Kell
2008 J jnl
Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte Carlo.
Bioinform.
Bayu Jayawardhana, Douglas B. Kell, Magnus Rattray
2008 J jnl
Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web.
PLoS Comput. Biol.
Duncan Hull, Steve Pettifer, Douglas B. Kell
2008 J jnl
Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.
BMC Bioinform.
Irena Spasic, Daniel Schober, Susanna-Assunta Sansone, Dietrich Rebholz-Schuhmann, Douglas B. Kell, Norman W. Paton
2008 — conf
Molecular Structure Elucidation Using Ant Colony Optimization: A Preliminary Study.
ANTS Conference
Caroline Farrelly, Douglas B. Kell, Joshua D. Knowles
2008 J jnl
Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
BMC Bioinform.
Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell
2008 A conf
Rapid prediction of optimum population size in genetic programming using a novel genotype -: fitness correlation.
GECCO
David C. Wedge, Douglas B. Kell
2008 J jnl
The landscape adaptive particle swarm optimizer.
Appl. Soft Comput.
Yisu Jin, Joshua D. Knowles, Hongmei Lu, Yizeng Liang, Douglas B. Kell
2007 C conf
Improving Data Fitting of a Signal Transduction Model by Global Sensitivity Analysis.
ACC
Yisu Jin, Hong Yue, Martin Brown, Yizeng Liang, Douglas B. Kell
2007 J jnl
Multiobjective Optimization in Bioinformatics and Computational Biology.
IEEE ACM Trans. Comput. Biol. Bioinform.
Julia Handl, Douglas B. Kell, Joshua D. Knowles
2007 A conf
Peptide detectability following ESI mass spectrometry: prediction using genetic programming.
GECCO
David C. Wedge, Simon J. Gaskell, Simon J. Hubbard, Douglas B. Kell, King Wai Lau, Claire Eyers
2007 — ch.
Taverna/
Workflows for e-Science, Scientific Workflows for Grids
Tom Oinn, Peter Li, Douglas B. Kell, Carole A. Goble, Antoon Goderis, Robert Mark Greenwood, Duncan Hull, Robert Stevens, Daniele Turi, Jun Zhao
2007 J jnl
Towards a mathematical model of the cAMP pathway in S. cerevisiae.
BMC Syst. Biol.
Thomas Williamson, Frank Bruggemann, Douglas B. Kell, Lubomira Stateva
2006 J jnl
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics.
BMC Bioinform.
Irena Spasic, Warwick B. Dunn, Giles Velarde, Andy Tseng, Helen Jenkins, Nigel Hardy, Stephen G. Oliver, Douglas B. Kell
2005 J jnl
Computational cluster validation in post-genomic data analysis.
Bioinform.
Julia Handl, Joshua D. Knowles, Douglas B. Kell
2005 J jnl
maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination.
BMC Bioinform.
David Hancock, Michael Wilson, Giles Velarde, Norman Morrison, Andrew Hayes, Helen Hulme, A. Joseph Wood, Karim Nashar, Douglas B. Kell, Andy Brass
2003 — conf
Landscape State Machines: Tools for Evolutionary Algorithm Performance Analyses and Landscape/Algorithm Mapping.
EvoWorkshops
David Corne, Martin J. Oates, Douglas B. Kell
2002 A conf
Fitness Gains and Mutation Patterns: Deriving Mutation Rates by Exploiting Landscape Data.
FOGA
David W. Corne, Martin J. Oates, Douglas B. Kell
2002 — conf
Observed dynamics of Large Scale Parallel Evolutionary Algorithms with Implications for protein Engineering.
SEAL
Martin J. Oates, David Corne, Douglas B. Kell
2002 A conf
On Fitness Distributions and Expected Fitness Gain of Mutation Rates in Parallel Evolutionary Algorithms.
PPSN
David Corne, Martin J. Oates, Douglas B. Kell
2001 J jnl
Combining Inductive Logic Programming, Active Learning and Robotics to Discover the Function of Genes.
Electron. Trans. Artif. Intell.
Christopher H. Bryant, Stephen H. Muggleton, Stephen G. Oliver, Douglas B. Kell, Philip G. K. Reiser, Ross D. King
2001 — conf
Compression of proteome gel images using complex wavelet transform.
German Conference on Bioinformatics
Wei Liu, Andy Woodward, Douglas B. Kell
2001 J jnl
Developing a Logical Model of Yeast Metabolism.
Electron. Trans. Artif. Intell.
Philip G. K. Reiser, Ross D. King, Douglas B. Kell, Stephen H. Muggleton, Christopher H. Bryant, Stephen G. Oliver
2001 J jnl
MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systems.
Bioinform.
Pedro Mendes, Douglas B. Kell
2001 B conf
Spectral analysis via supervised genetic search with application-specific mutations.
CEC
Janet Taylor, Jem J. Rowland, Douglas B. Kell
2000 J jnl
Explanatory Analysis of the Metabolome Using Genetic Programming of Simple, Interpretable Rules.
Genet. Program. Evolvable Mach.
Helen E. Johnson, Richard J. Gilbert, Michael K. Winson, Royston Goodacre, Aileen R. Smith, Jem J. Rowland, Michael A. Hall, Douglas B. Kell
2000 A conf
Genomic computing: explanatory modelling for functional genomics.
GECCO
Richard J. Gilbert, Jem J. Rowland, Douglas B. Kell
1998 J jnl
Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation.
Bioinform.
Pedro Mendes, Douglas B. Kell