Doruk Bozdag

23 papers A 3B 2C 3Journal 8Unranked 7
YearRankTypeTitle / Venue / Authors
2013 J jnl
Benchmarking short sequence mapping tools.
BMC Bioinform.
Ayat Hatem, Doruk Bozdag, Amanda E. Toland, Ümit V. Çatalyürek
2012 J jnl
Optimizing the stretch of independent tasks on a cluster: From sequential tasks to moldable tasks.
J. Parallel Distributed Comput.
Erik Saule, Doruk Bozdag, Ümit V. Çatalyürek
2011 — conf
Benchmarking Short Sequence Mapping Tools.
BIBM
Ayat Hatem, Doruk Bozdag, Ümit V. Çatalyürek
2010 C conf
A Moldable Online Scheduling Algorithm and Its Application to Parallel Short Sequence Mapping.
JSSPP
Erik Saule, Doruk Bozdag, Ümit V. Çatalyürek
2010 — conf
Comparative analysis of biclustering algorithms.
BCB
Doruk Bozdag, Ashwin S. Kumar, Ümit V. Çatalyürek
2010 J jnl
Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation.
SIAM J. Sci. Comput.
Doruk Bozdag, Ümit V. Çatalyürek, Assefaw H. Gebremedhin, Fredrik Manne, Erik G. Boman, Füsun Özgüner
2010 — conf
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform.
IPDPS Workshops
Doruk Bozdag, Ayat Hatem, Ümit V. Çatalyürek
2009 — conf
A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets.
BICoB
Doruk Bozdag, Jeffrey D. Parvin, Ümit V. Çatalyürek
2009 — conf
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.
BICoB
Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang
2009 J jnl
A repartitioning hypergraph model for dynamic load balancing.
J. Parallel Distributed Comput.
Ümit V. Çatalyürek, Erik G. Boman, Karen D. Devine, Doruk Bozdag, Robert T. Heaphy, Lee Ann Riesen
2009 J jnl
Compaction of Schedules and a Two-Stage Approach for Duplication-Based DAG Scheduling.
IEEE Trans. Parallel Distributed Syst.
Doruk Bozdag, Füsun Özgüner, Ümit V. Çatalyürek
2009 A conf
Parallel short sequence mapping for high throughput genome sequencing.
IPDPS
Doruk Bozdag, Catalin C. Barbacioru, Ümit V. Çatalyürek
2009 — conf
Parallelization of Mapping Algorithms for Next Generation Sequencing Applications.
Combinatorial Scientific Computing
Doruk Bozdag, Catalin C. Barbacioru, Ümit V. Çatalyürek
2008 J jnl
A framework for scalable greedy coloring on distributed-memory parallel computers.
J. Parallel Distributed Comput.
Doruk Bozdag, Assefaw Hadish Gebremedhin, Fredrik Manne, Erik G. Boman, Ümit V. Çatalyürek
2007 A conf
Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations.
IPDPS
Ümit V. Çatalyürek, Erik G. Boman, Karen D. Devine, Doruk Bozdag, Robert T. Heaphy, Lee Ann Riesen
2006 A conf
A task duplication based bottom-up scheduling algorithm for heterogeneous environments.
IPDPS
Doruk Bozdag, Ümit V. Çatalyürek, Füsun Özgüner
2006 J jnl
Data harvesting with mobile elements in wireless sensor networks.
Comput. Networks
Yaoyao Gu, Doruk Bozdag, Robert W. Brewer, Eylem Ekici
2006 C conf
Mobile Element Based Differentiated Message Delivery in Wireless Sensor Networks.
WOWMOM
Yaoyao Gu, Doruk Bozdag, Eylem Ekici
2006 J jnl
Mobility-based communication in wireless sensor networks.
IEEE Commun. Mag.
Eylem Ekici, Yaoyao Gu, Doruk Bozdag
2005 C conf
A Parallel Distance-2 Graph Coloring Algorithm for Distributed Memory Computers.
HPCC
Doruk Bozdag, Ümit V. Çatalyürek, Assefaw Hadish Gebremedhin, Fredrik Manne, Erik G. Boman, Füsun Özgüner
2005 — conf
A Scalable Parallel Graph Coloring Algorithm for Distributed Memory Computers.
Euro-Par
Erik G. Boman, Doruk Bozdag, Ümit V. Çatalyürek, Assefaw Hadish Gebremedhin, Fredrik Manne
2005 B conf
A Task Duplication Based Scheduling Algorithm Using Partial Schedules.
ICPP
Doruk Bozdag, Füsun Özgüner, Eylem Ekici, Ümit V. Çatalyürek
2005 B conf
Partitioning based mobile element scheduling in wireless sensor networks.
SECON
Yaoyao Gu, Doruk Bozdag, Eylem Ekici, Füsun Özgüner, Chang-Gun Lee