Donna K. Slonim

38 papers A* 4B 4C 1Misc 4Journal 18Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
MEDFORD in a Box: Improvements and Future Directions for a Metadata Description Language.
CoRR
Polina Shpilker, Benjamin Stubbs, Michael Sayers, Yumin Lee, Lenore Cowen, Donna K. Slonim, Shaun Wallace, Alva L. Couch, Noah M. Daniels
2025 J jnl
Improved gene regulatory network inference from single cell data with dropout augmentation.
PLoS Comput. Biol.
Hao Zhu, Donna K. Slonim
2022 — conf
FiT: fiber-based tensor completion for drug repurposing.
BCB
Aysegul Bumin, Anna M. Ritz, Donna K. Slonim, Tamer Kahveci, Kejun Huang
2020 J jnl
ISMB 2020 proceedings.
Bioinform.
Nadia El-Mabrouk, Donna K. Slonim
2020 Misc conf
aTEMPO: Pathway-Specific Temporal Anomalies for Precision Therapeutics.
PSB
Christopher Michael Pietras, Liam Power, Donna K. Slonim
2018 J jnl
Putting benchmarks in their rightful place: The heart of computational biology.
PLoS Comput. Biol.
Bjoern Peters, Steven E. Brenner, Edwin Wang, Donna K. Slonim, Maricel G. Kann
2018 — conf
TEMPO: Detecting Pathway-Specific Temporal Dysregulation of Gene Expression in Disease.
BCB
Christopher Michael Pietras, Faith Ocitti, Donna K. Slonim
2017 — conf
Building a Molecular Taxonomy of Disease.
BCB
Jisoo Park, Benjamin J. Hescott, Donna K. Slonim
2017 — conf
Scalable FRaC Variants: Anomaly Detection for Precision Medicine.
IPDPS Workshops
Cyrus Cousins, Christopher M. Pietras, Donna K. Slonim
2017 J jnl
Towards a more molecular taxonomy of disease.
J. Biomed. Semant.
Jisoo Park, Benjamin J. Hescott, Donna K. Slonim
2015 J jnl
CSAX: Characterizing Systematic Anomalies in eXpression Data.
J. Comput. Biol.
Keith Noto, Saeed Majidi, Andrea G. Edlow, Heather C. Wick, Diana W. Bianchi, Donna K. Slonim
2015 J jnl
Guest Editors' Introduction: Selected Papers from ACM-BCB 2013.
IEEE ACM Trans. Comput. Biol. Bioinform.
Srinivas Aluru, Donna K. Slonim
2014 B conf
CSAX: Characterizing Systematic Anomalies in eXpression Data.
RECOMB
Keith Noto, Carla E. Brodley, Saeed Majidi, Diana W. Bianchi, Donna K. Slonim
2014 J jnl
DFLAT: functional annotation for human development.
BMC Bioinform.
Heather C. Wick, Harold J. Drabkin, Huy Ngu, Michael Sackman, Craig Fournier, Jessica Haggett, Judith A. Blake, Diana W. Bianchi, Donna K. Slonim
2014 J jnl
Finding Novel Molecular Connections between Developmental Processes and Disease.
PLoS Comput. Biol.
Jisoo Park, Heather C. Wick, Daniel E. Kee, Keith Noto, Jill L. Maron, Donna K. Slonim
2012 J jnl
FRaC: a feature-modeling approach for semi-supervised and unsupervised anomaly detection.
Data Min. Knowl. Discov.
Keith Noto, Carla E. Brodley, Donna K. Slonim
2011 J jnl
Connectedness of PPI network neighborhoods identifies regulatory hub proteins.
Bioinform.
Andrew D. Fox, Benjamin J. Hescott, Anselm Blumer, Donna K. Slonim
2011 Misc conf
Mining Functionally Relevant Gene Sets for Analyzing Physiologically Novel Clinical Expression Data.
Pacific Symposium on Biocomputing
Sevin Turcan, Xintao Wei, Jill L. Maron, Douglas E. Vetter, Donna K. Slonim
2010 A* conf
Anomaly Detection Using an Ensemble of Feature Models.
ICDM
Keith Noto, Carla E. Brodley, Donna K. Slonim
2010 J jnl
Evaluating Between-Pathway Models with Expression Data.
J. Comput. Biol.
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore J. Cowen, Donna K. Slonim
2010 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh, Donna K. Slonim
2010 J jnl
Toward the dynamic interactome: it's about time.
Briefings Bioinform.
Teresa M. Przytycka, Mona Singh, Donna K. Slonim
2009 B conf
Evaluating Between-Pathway Models with Expression Data.
RECOMB
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore Cowen, Donna K. Slonim
2009 J jnl
Getting Started in Gene Expression Microarray Analysis.
PLoS Comput. Biol.
Donna K. Slonim, Itai Yanai
2009 Misc conf
High Throughput Interaction Data Reveals Degree Conservation of Hub Proteins.
Pacific Symposium on Biocomputing
Andrew D. Fox, D. Taylor, Donna K. Slonim
2008 — conf
A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes.
ISBRA
Xintao Wei, Lenore Cowen, Carla E. Brodley, Arthur Brady, D. Sculley, Donna K. Slonim
2008 — conf
Mining Protein-Protein Interactions from GeneRIFs with OpenDMAP.
BioLINK@ISMB/ECCB
Andrew D. Fox, William A. Baumgartner Jr., Helen L. Johnson, Lawrence E. Hunter, Donna K. Slonim
2006 C conf
Motif Evaluation by Leave-one-out Scoring.
CIBCB
Audrey Girouard, Noah W. Smith, Donna K. Slonim
2000 B conf
Class prediction and discovery using gene expression data.
RECOMB
Donna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander
1999 J jnl
Computational biology.
Comput. Sci. Eng.
Jill P. Mesirov, Donna K. Slonim
1998 J jnl
Learning with Unreliable Boundary Queries.
J. Comput. Syst. Sci.
Avrim Blum, Prasad Chalasani, Sally A. Goldman, Donna K. Slonim
1997 J jnl
Building Human Genome Maps with Radiation Hybrids.
J. Comput. Biol.
Donna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander
1997 B conf
Building human genome maps with radiation hybrids.
RECOMB
Donna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander
1996 — —
Learning from imperfect data in theory and practice.
Donna K. Slonim
1995 A* conf
Learning with Unreliable Boundary Queries.
COLT
Avrim Blum, Prasad Chalasani, Sally A. Goldman, Donna K. Slonim
1994 J jnl
Randomly Fallible Teachers: Learning Monotone DNF with an Incomplete Membership Oracle.
Mach. Learn.
Dana Angluin, Donna K. Slonim
1994 A* conf
The Power of Team Exploration: Two Robots Can Learn Unlabeled Directed Graphs
FOCS
Michael A. Bender, Donna K. Slonim
1991 A* conf
Learning Monotone DNF with an Incomplete Membership Oracle.
COLT
Dana Angluin, Donna K. Slonim