Dongsup Kim

37 papers C 3Misc 2Journal 31Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
scMix: learning temporal dynamics of gene expression under irregular time intervals.
Bioinform.
Shangjin Han, Dongsup Kim
2024 J jnl
AbFlex: designing antibody complementarity determining regions with flexible CDR definition.
Bioinform.
Woosung Jeon, Dongsup Kim
2024 J jnl
TSpred: a robust prediction framework for TCR-epitope interactions using paired chain TCR sequence data.
Bioinform.
Ha Young Kim, Sungsik Kim, Woong-Yang Park, Dongsup Kim
2022 J jnl
DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator.
Bioinform.
Dongchan Yang, Taesu Chung, Dongsup Kim
2020 J jnl
CRDS: Consensus Reverse Docking System for target fishing.
Bioinform.
Aeri Lee, Dongsup Kim
2020 J jnl
Prediction of mutation effects using a deep temporal convolutional network.
Bioinform.
Ha Young Kim, Dongsup Kim
2019 J jnl
FP2VEC: a new molecular featurizer for learning molecular properties.
Bioinform.
Woosung Jeon, Dongsup Kim
2018 J jnl
3DIV: A 3D-genome Interaction Viewer and database.
Nucleic Acids Res.
Dongchan Yang, Insu Jang, Jinhyuk Choi, Minseo Kim, Andrew J. Lee, Hyun-Woong Kim, Junghyun Eom, Dongsup Kim, Inkyung Jung, Byungwook Lee
2018 J jnl
KRDS: a web server for evaluating drug resistance mutations in kinases by molecular docking.
J. Cheminformatics
Aeri Lee, Seungpyo Hong, Dongsup Kim
2017 J jnl
Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction.
BMC Bioinform.
Youngmahn Han, Dongsup Kim
2017 J jnl
Utilizing random Forest QSAR models with optimized parameters for target identification and its application to target-fishing server.
BMC Bioinform.
Kyoungyeul Lee, Minho Lee, Dongsup Kim
2016 J jnl
Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffolds.
Bioinform.
Seungpyo Hong, Dongsup Kim
2016 J jnl
Structure-based Markov random field model for representing evolutionary constraints on functional sites.
BMC Bioinform.
Chan-seok Jeong, Dongsup Kim
2013 J jnl
FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action.
BMC Genom.
Minho Lee, Sangjo Han, Hyeshik Chang, Youn-Sig Kwak, David M. Weller, Dongsup Kim
2013 J jnl
Interaction network among functional drug groups.
BMC Syst. Biol.
Minho Lee, Keunwan Park, Dongsup Kim
2012 J jnl
A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network.
BMC Syst. Biol.
Changki Hong, Minho Lee, Dongsup Kim, Dong San Kim, Kwang-Hyun Cho, Insik Shin
2012 Misc conf
Coevolved Residues and the Functional Association for Intrinsically Disordered Proteins.
Pacific Symposium on Biocomputing
Chan-seok Jeong, Dongsup Kim
2012 J jnl
Large-scale reverse docking profiles and their applications.
BMC Bioinform.
Minho Lee, Dongsup Kim
2011 J jnl
Drug-drug relationship based on target information: application to drug target identification.
BMC Syst. Biol.
Keunwan Park, Dongsup Kim
2011 J jnl
Modeling allosteric signal propagation using protein structure networks.
BMC Bioinform.
Keunwan Park, Dongsup Kim
2010 J jnl
Linear predictive coding representation of correlated mutation for protein sequence alignment.
BMC Bioinform.
Chan-seok Jeong, Dongsup Kim
2010 J jnl
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship.
BMC Bioinform.
Inkyung Jung, Akihisa Matsuyama, Minoru Yoshida, Dongsup Kim
2009 J jnl
A new method for revealing correlated mutations under the structural and functional constraints in proteins.
Bioinform.
Byung-chul Lee, Dongsup Kim
2009 — conf
Linear predictive coding representation of correlated mutation for protein sequence alignment.
DTMBIO
Chan-seok Jeong, Dongsup Kim
2009 J jnl
SIMPRO: simple protein homology detection method by using indirect signals.
Bioinform.
Inkyung Jung, Dongsup Kim
2008 J jnl
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection.
BMC Bioinform.
Inkyung Jung, Jaehyung Lee, Soo-Young Lee, Dongsup Kim
2008 J jnl
Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target Pathways.
PLoS Comput. Biol.
Sangjo Han, Dongsup Kim
2008 C ed.
Intelligent Data Engineering and Automated Learning - IDEAL 2008, 9th International Conference, Daejeon, South Korea, November 2-5, 2008, Proceedings
IDEAL
Colin Fyfe, Dongsup Kim, Soo-Young Lee, Hujun Yin
2007 C conf
Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression Profiles.
BIBE
Sheehyun Kim, Dongsup Kim
2007 J jnl
Predicting and improving the protein sequence alignment quality by support vector regression.
BMC Bioinform.
Minho Lee, Chan-seok Jeong, Dongsup Kim
2006 J jnl
AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs.
BMC Bioinform.
Sangjo Han, Dongsup Kim
2005 J jnl
Fold recognition by combining profile-profile alignment and support vector machine.
Bioinform.
Sangjo Han, Byung-chul Lee, Seung Taek Yu, Chan-seok Jeong, Soyoung Lee, Dongsup Kim
2003 C conf
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale.
BIBE
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
2003 J jnl
A computational pipeline for protein structure prediction and analysis at genome scale.
Bioinform.
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
2003 Misc conf
Protein Threading by Linear Programming.
Pacific Symposium on Biocomputing
Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu
2003 J jnl
Raptor: Optimal Protein Threading by Linear Programming.
J. Bioinform. Comput. Biol.
Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu
2002 J jnl
Automated assignment of backbone NMR peaks using constrained bipartite matching.
Comput. Sci. Eng.
Ying Xu, Dong Xu, Dongsup Kim, Victor Olman, Jane Razumovskaya, Tao Jiang