Dong Wang

27 papers Journal 27
YearRankTypeTitle / Venue / Authors
2025 J jnl
Deep learning-driven survival prediction in pan-cancer studies by integrating multimodal histology-genomic data.
Briefings Bioinform.
Yongfei Hu, Xinyu Li, Ying Yi, Yan Huang, Guangyu Wang, Dong Wang
2023 J jnl
LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism.
Briefings Bioinform.
Tianyuan Liu, Bohao Zou, Manman He, Yongfei Hu, Yiying Dou, Tianyu Cui, Puwen Tan, Shaobin Li, Shuan Rao, Yan Huang, Sixi Liu, Kaican Cai, Dong Wang
2023 J jnl
RNADisease v4.0: an updated resource of RNA-associated diseases, providing RNA-disease analysis, enrichment and prediction.
Nucleic Acids Res.
Jia Chen, Jiahao Lin, Yongfei Hu, Meijun Ye, Linhui Yao, Le Wu, Wenhai Zhang, Meiyi Wang, Tingting Deng, Feng Guo, Yan Huang, Bofeng Zhu, Dong Wang
2022 J jnl
FibROAD: a manually curated resource for multi-omics level evidence integration of fibrosis research.
Database J. Biol. Databases Curation
Yu-Zhe Sun, Yong-Fei Hu, Yan Zhang, Shu-Yi Wei, Bei-Lei Yang, Ying-Ping Xu, Zhi-Li Rong, Dong Wang, Bin Yang
2022 J jnl
RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility.
Nucleic Acids Res.
Juanjuan Kang, Qiang Tang, Jun He, Le Li, Nianling Yang, Shuiyan Yu, Mengyao Wang, Yuchen Zhang, Jiahao Lin, Tianyu Cui, Yongfei Hu, Puwen Tan, Jun Cheng, Hailong Zheng, Dong Wang, Xi Su, Wei Chen, Yan Huang
2022 J jnl
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation.
Nucleic Acids Res.
Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, Duolin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu, Hao Lin, Dong Wang
2022 J jnl
RNAPhaSep: a resource of RNAs undergoing phase separation.
Nucleic Acids Res.
Haibo Zhu, Hao Fu, Tianyu Cui, Lin Ning, Huaguo Shao, Yehan Guo, Yanting Ke, Jiayi Zheng, Hongyan Lin, Xin Wu, Guanghao Liu, Jun He, Xin Han, Wenlin Li, Xiaoyang Zhao, Huasong Lu, Dong Wang, Kongfa Hu, Xiaopei Shen
2022 J jnl
ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation.
Nucleic Acids Res.
Jun Cheng, Yunqing Lin, Linfu Xu, Kechen Chen, Qi Li, Kaixin Xu, Lin Ning, Juanjuan Kang, Tianyu Cui, Yan Huang, Xiaoyang Zhao, Dong Wang, Yanhui Li, Xi Su, Bin Yang
2021 J jnl
Cellinker: a platform of ligand-receptor interactions for intercellular communication analysis.
Bioinform.
Yang Zhang, Tianyuan Liu, Jing Wang, Bohao Zou, Le Li, Linhui Yao, Kechen Chen, Lin Ning, Bingyi Wu, Xiaoyang Zhao, Dong Wang
2021 J jnl
Design powerful predictor for mRNA subcellular location prediction in Homo sapiens.
Briefings Bioinform.
Zhao-Yue Zhang, Yu-He Yang, Hui Ding, Dong Wang, Wei Chen, Hao Lin
2021 J jnl
MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation.
Nucleic Acids Res.
Lin Ning, Tianyu Cui, Boyang Zheng, Nuo Wang, Jiaxin Luo, Beilei Yang, Mengze Du, Jun Cheng, Yiying Dou, Dong Wang
2021 J jnl
cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function.
Nucleic Acids Res.
Yan Huang, Jing Wang, Yue Zhao, Huafeng Wang, Tianyuan Liu, Yuhe Li, Tianyu Cui, Weiyi Li, Yige Feng, Jiaxin Luo, Jiaqi Gong, Lin Ning, Yong Zhang, Dong Wang, Yang Zhang
2020 J jnl
RNAInter in 2020: RNA interactome repository with increased coverage and annotation.
Nucleic Acids Res.
Yunqing Lin, Tianyuan Liu, Tianyu Cui, Zhao Wang, Yuncong Zhang, Puwen Tan, Yan Huang, Jia Yu, Dong Wang
2019 J jnl
Exploiting locational and topological overlap model to identify modules in protein interaction networks.
BMC Bioinform.
Lixin Cheng, Pengfei Liu, Dong Wang, Kwong-Sak Leung
2019 J jnl
RIscoper: a tool for RNA-RNA interaction extraction from the literature.
Bioinform.
Yang Zhang, Tianyuan Liu, Liqun Chen, Jinxurong Yang, Jiayi Yin, Yuncong Zhang, Zhixi Yun, Hao Xu, Lin Ning, Feng-Biao Guo, Yongshuai Jiang, Hao Lin, Dong Wang, Yan Huang, Jian Huang
2018 J jnl
MNDR v2.0: an updated resource of ncRNA-disease associations in mammals.
Nucleic Acids Res.
Tianyu Cui, Lin Zhang, Yan Huang, Ying Yi, Puwen Tan, Yue Zhao, Yongfei Hu, Liyan Xu, Enmin Li, Dong Wang
2018 J jnl
iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC.
Bioinform.
Zhen-Dong Su, Yan Huang, Zhao-Yue Zhang, Ya-Wei Zhao, Dong Wang, Wei Chen, Kuo-Chen Chou, Hao Lin
2017 J jnl
RAID v2.0: an updated resource of RNA-associated interactions across organisms.
Nucleic Acids Res.
Ying Yi, Yue Zhao, Chunhua Li, Lin Zhang, Huiying Huang, Yana Li, Lanlan Liu, Ping Hou, Tianyu Cui, Puwen Tan, Yongfei Hu, Ting Zhang, Yan Huang, Xiaobo Li, Jia Yu, Dong Wang
2017 J jnl
RNALocate: a resource for RNA subcellular localizations.
Nucleic Acids Res.
Ting Zhang, Puwen Tan, Liqiang Wang, Nana Jin, Yana Li, Lin Zhang, Huan Yang, Zhenyu Hu, Lining Zhang, Chunyu Hu, Chunhua Li, Kun Qian, Changjian Zhang, Yan Huang, Kongning Li, Hao Lin, Dong Wang
2015 J jnl
ViRBase: a resource for virus-host ncRNA-associated interactions.
Nucleic Acids Res.
Yanhui Li, Changliang Wang, Zhengqiang Miao, Xiaoman Bi, Deng Wu, Nana Jin, Liqiang Wang, Hao Wu, Kun Qian, Chunhua Li, Ting Zhang, Chunrui Zhang, Ying Yi, Hongyan Lai, Yongfei Hu, Lixin Cheng, Kwong-Sak Leung, Xiaobo Li, Fengmin Zhang, Kongning Li, Xia Li, Dong Wang
2011 J jnl
Extensive increase of microarray signals in cancers calls for novel normalization assumptions.
Comput. Biol. Chem.
Dong Wang, Lixin Cheng, Mingyue Wang, Ruihong Wu, Pengfei Li, Bin Li, Yuannv Zhang, Yunyan Gu, Wenyuan Zhao, Chenguang Wang, Zheng Guo
2009 J jnl
Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network.
Bioinform.
Zheng Guo, Lei Wang, Yongjin Li, Xue Gong, Chen Yao, Wencai Ma, Dong Wang, Yanhui Li, Jing Zhu, Min Zhang, Da Yang, Shaoqi Rao, Jing Wang
2009 J jnl
Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes.
Bioinform.
Min Zhang, Lin Zhang, Jinfeng Zou, Chen Yao, Hui Xiao, Qing Liu, Jing Wang, Dong Wang, Chenguang Wang, Zheng Guo
2008 J jnl
Apparently low reproducibility of true differential expression discoveries in microarray studies.
Bioinform.
Min Zhang, Chen Yao, Zheng Guo, Jinfeng Zou, Lin Zhang, Hui Xiao, Dong Wang, Da Yang, Xue Gong, Jing Zhu, Yanhui Li, Xia Li
2008 J jnl
Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories.
Bioinform.
Da Yang, Yanhui Li, Hui Xiao, Qing Liu, Min Zhang, Jing Zhu, Wencai Ma, Chen Yao, Jing Wang, Dong Wang, Zheng Guo, Baofeng Yang
2007 J jnl
Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network.
Bioinform.
Zheng Guo, Yongjin Li, Xue Gong, Chen Yao, Wencai Ma, Dong Wang, Yanhui Li, Jing Zhu, Min Zhang, Da Yang, Jing Wang
2006 J jnl
Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules.
Bioinform.
Dong Wang, Yingli Lv, Zheng Guo, Xia Li, Yanhui Li, Jing Zhu, Da Yang, Jianzhen Xu, Chenguang Wang, Shaoqi Rao, Baofeng Yang