Dong-Guk Shin

68 papers A 1B 4C 5Misc 4Journal 20Unranked 33
YearRankTypeTitle / Venue / Authors
2024 — conf
FuncNet: A Machine Learning Framework Capable of Enhancing Neural Cell Type Classification via Functional Subtype Clustering.
BIBM
Chenyu Zhang, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin
2024 — conf
Leveraging Mutual Information for Functional Annotation Analysis of Microglia in Alzheimer's Disease.
BCB
Chenyu Zhang, Qingli Hu, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin
2024 — conf
Resolving multiple structural variation callers and platforms by matrix transformation and imputation.
BIBM
Timothy James Becker, Michelle Le, Deem Quinn, Yeonsoo Chung, Dong-Guk Shin
2024 J jnl
vSPACE: exploring virtual spatial representation of articular chondrocytes at the single-cell level.
Bioinform.
Chenyu Zhang, Honglin Wang, Yeonsoo Chung, Seung-Hyun Hong, Merissa Olmer, Hannah Swahn, Martin Lotz, Peter F. Maye, David W. Rowe, Dong-Guk Shin
2023 — conf
AFA: Abstract Functional Analysis Identifies New Microglial Subtypes at Single Cell Level in Alzheimer's Disease.
ICCABS
Chenyu Zhang, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin
2023 — conf
Using Biological Processes as Prior Knowledge Identifies New Microglial Immune Signatures at Single Cell Level in Alzheimer's Disease.
BIBM
Chenyu Zhang, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin
2022 — conf
A framework for associating structural variants with cell-specific transcription factors and histone modifications in defect phenotypes.
BIBM
Timothy James Becker, Dashzeveg Bayarsaihan, Dong-Guk Shin
2022 — conf
Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease.
BIBM
Chenyu Zhang, Pujan Joshi, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin
2022 — conf
rCom: a route-based framework inferring cell type communication and regulatory network using single cell data.
BCB
Honglin Wang, Pujan Joshi, Chenyu Zhang, Peter F. Maye, David W. Rowe, Dong-Guk Shin
2021 J jnl
Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-Dimensional Omics Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yue Zhao, Dong-Guk Shin
2021 — conf
Identification of Crosstalk between Biological Pathway Routes in Cancer Cohorts.
BIBM
Pujan Joshi, Honglin Wang, Salvatore Jaramillo, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
2021 J jnl
Structural variation calling and genotyping by moment-based deep convolutional neural networks.
Int. J. Data Min. Bioinform.
Timothy James Becker, Dong-Guk Shin
2021 — conf
ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data.
BIBM
Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Dong-Ju Shin, Dong-Guk Shin
2020 — conf
A Framework for Route Based Pathway Analysis of Gene Expression Data.
ICCBB
Pujan Joshi, Honglin Wang, Brent Basso, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
2020 J jnl
Efficient methods for hierarchical multi-omic feature extraction and visualisation.
Int. J. Data Min. Bioinform.
Timothy James Becker, Dong-Guk Shin
2020 — conf
Identification of Key Biological Pathway Routes in Cancer Cohorts.
BIBM
Pujan Joshi, Brent Basso, Honglin Wang, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
2020 — conf
TensorSV: structural variation inference using tensors and variable topology neural networks.
BIBM
Timothy James Becker, Dong-Guk Shin
2020 — conf
cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets.
BIBM
Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Peter F. Maye, David W. Rowe, Dong-Guk Shin
2019 — conf
HFM: Hierarchical Feature Moment Extraction for Multi-Omic Data Visualization.
BIBM
Timothy James Becker, Dong-Guk Shin
2019 — conf
Recurrent Neural Network for Gene Regulation Network Construction on Time Series Expression Data.
BIBM
Yue Zhao, Pujan Joshi, Dong-Guk Shin
2019 J jnl
TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators.
Bioinform.
Asa Thibodeau, Dong-Guk Shin
2016 — conf
Deep pathway analysis incorporating mutation information and gene expression data.
BIBM
Yue Zhao, Tham H. Hoang, Pujan Joshi, Seung-Hyun Hong, Dong-Guk Shin
2016 J jnl
QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.
PLoS Comput. Biol.
Asa Thibodeau, Eladio J. Márquez, Oscar Luo, Yijun Ruan, Francesca Menghi, Dong-Guk Shin, Michael L. Stitzel, Paola Vera-Licona, Duygu Ucar
2013 J jnl
A Phrase-based Ontology Enabled Semantic Processing System for Web Search.
Trans. Mach. Learn. Data Min.
Joseph Leone, Dong-Guk Shin
2013 — conf
A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships.
BIBM
Pujan Joshi, Baikang Pei, Seung-Hyun Hong, Ivo Kalajzic, Dong-Ju Shin, David W. Rowe, Dong-Guk Shin
2012 J jnl
Reconstruction of Biological Networks by Incorporating Prior Knowledge into Bayesian Network Models.
J. Comput. Biol.
Baikang Pei, Dong-Guk Shin
2011 — conf
A Semantic Processing System (SPS) for Biomedical Literature Web Search.
ICDM (Poster and Industry Proceedings)
Joseph Leone, Dong-Guk Shin
2010 J jnl
Learning Bayesian networks with integration of indirect prior knowledge.
Int. J. Data Min. Bioinform.
Baikang Pei, David W. Rowe, Dong-Guk Shin
2010 J jnl
Meta analysis algorithms for microarray gene expression data using Gene Regulatory Networks.
Int. J. Data Min. Bioinform.
Saira Ali Kazmi, Yoo-Ah Kim, Dong-Guk Shin
2010 — conf
Reconstruction of Biological Networks Structure by Using Bayesian Network Models with a Two-step Learning Procedure.
BIOCOMP
Baikang Pei, Dong-Guk Shin
2009 J jnl
An Improved Heuristic Approach for the Steiner Problem in Graphs.
Int. J. Comput. Their Appl.
Lung-Yung Chu, Dong-Guk Shin
2009 J jnl
Computing Consistency Between Microarray Data and Known Gene Regulation Relationships.
IEEE Trans. Inf. Technol. Biomed.
Dong-Guk Shin, Saira Ali Kazmi, Baikang Pei, Yoo-Ah Kim, Jeffrey Maddox, Ravi Nori, Alan Wong, Winfried Krueger, David W. Rowe
2009 — conf
PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis.
IJCBS
Dong-Guk Shin, Seung-Hyun Hong, Pujan Joshi, Ravi Nori, Baikang Pei, Hsin-Wei Wang, Patrick Harrington, Lynn Kuo, Ivo Kalajzic, David W. Rowe
2008 — conf
Meta Analysis of Microarray Data Using Gene Regulation Pathways.
BIBM
Saira Ali Kazmi, Yoo-Ah Kim, Baikang Pei, Ravi Nori, David W. Rowe, Hsin-Wei Wang, Alan Wong, Dong-Guk Shin
2008 — conf
Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information.
BIBM
Baikang Pei, David W. Rowe, Dong-Guk Shin
2006 C conf
A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data.
BIBE
Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Krueger, Jeffrey Maddox, Ravi Nori, Nathan Viniconis, Hsin-Wei Wang, Alan Wong, David W. Rowe
2003 C conf
Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri.
BIBE
John Bluis, Dong-Guk Shin
2002 — conf
A Comparative Study for Mining Biological Data.
IS
Taysir Hassan A. Soliman, Dong-Guk Shin
2001 C conf
Comparing Trees in a Phylogenetic Relationship Repository.
BIBE
John Bluis, Ravi Nori, Hsin-Wei Wang, Pinglei Zhou, J. Peter Gogarten, Dong-Guk Shin
2000 C conf
A Graph-based Meta-data Framework for Interoperation between Genome Databases.
BIBE
Kei-Hoi Cheung, Dong-Guk Shin
2000 B conf
CBM: A Visual Query Interface Model based on Annotated Cartoon Diagrams.
Advanced Visual Interfaces
Dong-Guk Shin, Ravi Shankar Nori
1999 J jnl
A Multistrategy Approach to Classification Learning in Databases.
Data Knowl. Eng.
Changhwan Lee, Dong-Guk Shin
1999 — conf
Centroid Trees with Application to String Processing.
PSCW
Fei Shi, Dong-Guk Shin
1999 J jnl
Using Hellinger distance in a nearest neighbour classifier for relational databases.
Knowl. Based Syst.
Changhwan Lee, Dong-Guk Shin
1999 B conf
Xyntagma: a Graphical Query Interface for the ACeDB Genome Databases.
CBMS
Wally Grajewski, Dong-Guk Shin, Lei Liu
1998 — conf
A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability.
IADT
Kei-Hoi Cheung, Dong-Guk Shin
1998 J jnl
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogeneous Database Environment.
J. Database Manag.
Jeong Seok Lim, Dong-Guk Shin
1998 — conf
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogenous Database Environment.
IADT
Jeong Seok Lim, Dong-Guk Shin
1998 Misc conf
A lightweight computational model for achieving location transparency in distributed environments.
CATA
Richard T. Landers, Dong-Guk Shin
1998 J jnl
A metadata approach to query interoperation between molecular biology databases.
Bioinform.
Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin
1998 Misc conf
A simple model capable of expressing meta-data for database interoperability.
CATA
Kei-Hoi Cheung, Dong-Guk Shin
1998 Misc conf
An effective heuristic algorithm for finding a steiner tree in graphs.
CATA
Lung-Yung Chu, Dong-Guk Shin
1998 B conf
An epistemological display query interface.
AVI
Dong-Guk Shin, Wally Grajewski, Lung-Yung Chu
1998 Misc conf
Automatic query mapping among genomic databases: a pilot exploration.
AMIA
Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin
1998 — conf
Establishing Logical Connectivity between Query Keywords and Database Contents.
Canadian AI
Dong-Guk Shin, Lung-Yung Chu
1998 — conf
Virtual Cell: A General Framework for Simulating and Visualizing Cellular Physiology.
VDB
Dong-Guk Shin, Lei Liu, Leslie M. Loew, James C. Schaff
1995 — conf
Comparative study of relational and object-oriented modelings of genomic data.
HICSS (5)
Dong-Guk Shin
1994 A conf
A Context-Sensitive Discretization of Numeric Attributes for Classification Learning.
ECAI
Changhwan Lee, Dong-Guk Shin
1994 — conf
Achieving Interoperability between Heterogeneous Object-Oriented Genomic Databases.
HICSS (5)
Dong-Guk Shin, Rohit Gupta, T. C. Ting
1994 J jnl
An Expection-Driven Response Understanding Paradigm.
IEEE Trans. Knowl. Data Eng.
Dong-Guk Shin
1994 — conf
Data and Knowledge Base Issues in Genomics: Introduction.
HICSS (5)
Dong-Guk Shin, François Rechenmann
1994 C conf
EEL: An Instance-Based Learning Method for Databases.
IEA/AIE
Changhwan Lee, Dong-Guk Shin
1992 J jnl
Redesigning, implementing and integrating Escherichia coli genome software tools with an object-oriented database system.
Comput. Appl. Biosci.
Dong-Guk Shin, Changhwan Lee, Jinghui Zhang, Kenneth E. Rudd, Claire M. Berg
1991 J jnl
Fragmenting Relations Horizontally Using a Knowledge-Based Approach.
IEEE Trans. Software Eng.
Dong-Guk Shin, Keki B. Irani
1990 J jnl
Am/AG Model: a Hierarchical Social System Metaphor for Distributed Problem Solving.
Int. J. Pattern Recognit. Artif. Intell.
Dong-Guk Shin, Joseph Leone
1990 — conf
An Expectation-Driven Approach to Q-A Processing.
ICSI
Dong-Guk Shin, S. K. Wallfesh
1988 B conf
Knowledge-aided engineering environment for design and manufacturing.
COMPSAC
Dong-Guk Shin, Fred J. Maryanski
1985 — —
An Extension of a First-Order Language and Its Applications (Many-Sorted Logic, Distributed Database Design, Resolution, Automatic Theorem Proving, Horizontal Partitioning).
Dong-Guk Shin