Donald J. Jacobs

24 papers B 2Journal 20Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Harnessing the Peripheral Surface Information Entropy from Globular Protein-Peptide Complexes.
CoRR
Tyler Grear, Donald J. Jacobs
2023 J jnl
Probability Density Estimation through Nonparametric Adaptive Partitioning and Stitching.
Algorithms
Zach D. Merino, Jenny Farmer, Donald J. Jacobs
2022 J jnl
Biased Hypothesis Formation From Projection Pursuit.
CoRR
John Patterson, Chris S. Avery, Tyler Grear, Donald J. Jacobs
2022 J jnl
Functional Dynamics of Substrate Recognition in TEM Beta-Lactamase.
Entropy
Chris S. Avery, Lonnie Baker, Donald J. Jacobs
2022 J jnl
MATLAB tool for probability density assessment and nonparametric estimation.
SoftwareX
Jenny Farmer, Donald J. Jacobs
2022 J jnl
PDFEstimator: An R Package for Density Estimation and Analysis.
R J.
Jenny Farmer, Donald J. Jacobs
2021 J jnl
Biased Hypothesis Formation From Projection Pursuit.
Adv. Artif. Intell. Mach. Learn.
John Patterson, Chris S. Avery, Tyler Grear, Donald J. Jacobs
2021 B conf
Classifying EEG motor imagery signals using supervised projection pursuit for artefact removal.
SMC
Tyler Grear, Donald J. Jacobs
2021 J jnl
JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit.
BMC Bioinform.
Charles C. David, Chris S. Avery, Donald J. Jacobs
2021 J jnl
Victory Tax: A Holistic Income Tax System.
Entropy
Donald J. Jacobs
2019 J jnl
Universal Sample Size Invariant Measures for Uncertainty Quantification in Density Estimation.
Entropy
Jenny Farmer, Zach D. Merino, Alexander Gray, Donald J. Jacobs
2017 J jnl
JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories.
BMC Bioinform.
Charles C. David, Ettayapuram Ramaprasad Azhagiya Singam, Donald J. Jacobs
2017 J jnl
Statistical Measures to Quantify Similarity between Molecular Dynamics Simulation Trajectories.
Entropy
Jenny Farmer, Fareeha Kanwal, Nikita Nikulsin, Matthew C. B. Tsilimigras, Donald J. Jacobs
2015 J jnl
A virtual pebble game to ensemble average graph rigidity.
Algorithms Mol. Biol.
Luis C. González, Hui Wang, Dennis R. Livesay, Donald J. Jacobs
2015 J jnl
Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments.
PLoS Comput. Biol.
Tong Li, Malgorzata B. Tracka, Shahid Uddin, Jose Casas-Finet, Donald J. Jacobs, Dennis R. Livesay
2013 B conf
A visual analytics approach to exploring protein flexibility subspaces.
PacificVis
Scott Barlowe, Jing Yang, Donald J. Jacobs, Dennis R. Livesay, Jamal Alsakran, Ye Zhao, Deeptak Verma, James Mottonen
2013 J jnl
Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity.
PLoS Comput. Biol.
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
2012 J jnl
Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged.
PLoS Comput. Biol.
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
2011 — conf
Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game.
BCB
Luis C. González, Dennis R. Livesay, Donald J. Jacobs
2011 J jnl
WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics.
Comput. Graph. Forum
Scott Barlowe, Yujie Liu, Jing Yang, Dennis R. Livesay, Donald J. Jacobs, James Mottonen, Deeptak Verma
2010 J jnl
A Signal Processing Method to Explore Similarity in Protein Flexibility.
Adv. Bioinformatics
Simina Vasilache, Nazanin Mirshahi, Soo-Yeon Ji, James Mottonen, Donald J. Jacobs, Kayvan Najarian
2009 J jnl
Best Probability Density Function for Random Sampled Data.
Entropy
Donald J. Jacobs
2008 J jnl
Conformational Entropy of an Ideal Cross-Linking Polymer Chain.
Entropy
Oleg K. Vorov, Dennis R. Livesay, Donald J. Jacobs
2008 — conf
Multivariate visual explanation for high dimensional datasets.
IEEE VAST
Scott Barlowe, Tianyi Zhang, Yujie Liu, Jing Yang, Donald J. Jacobs