Dominik Heider

64 papers C 4Misc 1Journal 53Unranked 4

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Federated Causal Discovery Across Heterogeneous Datasets under Latent Confounding. CoRR Maximilian Hahn, Alina Zajak, Dominik Heider, Adèle Helena Ribeiro
2025	J	`jnl`	Enhancing deep neural network training through learnable adaptive normalization. Knowl. Based Syst. Benedikt Ruhland, Iraj Masoudian, Dominik Heider
2025	J	`jnl`	Functional Localization Enforced Deep Anomaly Detection Using Fundus Images. CoRR Benedikt Ruhland, Thorsten Papenbrock, Jan-Peter Sowa, Ali Canbay, Nicole Eter, Bernd Freisleben, Dominik Heider
2025	J	`jnl`	LegionProfiler: a computational tool for the identification of virulence factors and classification of Bioinform. Oluwafemi A. Sarumi, Wilhelm Bertrams, Oliver Schwengers, Jan-Paul Herrmann, Torsten Hain, Laurine Kieper, Markus Petzold, Alexander Goesmann, Bernd Schmeck, Dominik Heider
2025	J	`jnl`	MetaMP: Seamless Metadata Enrichment and AI Application Framework for Enhanced Membrane Protein Visualization and Analysis. CoRR Ebenezer Awotoro, Chisom Ezekannagha, Florian Schwarz, Johannes Tauscher, Dominik Heider, Katharina Ladewig, Christel Le Bon, Karine Moncoq, Bruno Miroux, Georges Hattab
2025	J	`jnl`	The Locally Deployable Virtual Doctor: LLM Based Human Interface for Automated Anamnesis and Database Conversion. CoRR Benedikt Ruhland, Doguhan Bahcivan, Jan-Peter Sowa, Ali Canbay, Dominik Heider
2025	J	`jnl`	The virtual doctor prescribing the future: Diagnostics with interactive clinical decision support. Comput. Biol. Medicine Benedikt Ruhland, Johannes Wichmann, Dmitry Degtyar, Roman Martin, Leon Fehse, Jan Henric Klau, Thorsten Papenbrock, Jan-Peter Sowa, Ali Canbay, Bernd Freisleben, Michael Leyer, Dominik Heider
2025	—	`conf`	Towards Fairness in Synthetic Healthcare Data: A Framework for the Evaluation of Synthetization Algorithms. GMDS Yannik Warnecke, Martin Kuhn, Felix Diederichs, Tobias J. Brix, Lena Clever, Ralph Bergmann, Dominik Heider, Michael Storck
2025	J	`jnl`	dcFCI: Robust Causal Discovery Under Latent Confounding, Unfaithfulness, and Mixed Data. CoRR Adèle H. Ribeiro, Dominik Heider
2024	J	`jnl`	Fair swarm learning: Improving incentives for collaboration by a fair reward mechanism. Knowl. Based Syst. Mohammad Tajabadi, Dominik Heider
2024	J	`jnl`	Predicting hosts and cross-species transmission of Streptococcus agalactiae by interpretable machine learning. Comput. Biol. Medicine Yunxiao Ren, Carmen Li, Dulmini Nanayakkara Sapugahawatte, Chendi Zhu, Sebastian Spänig, Dorota Jamrozy, Julian Rothen, Claudia A. Daubenberger, Stephen D. Bentley, Margaret Ip, Dominik Heider
2023	J	`jnl`	Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification. Bioinform. Bastian Pfeifer, Hryhorii Chereda, Roman Martin, Anna Saranti, Sandra Clemens, Anne-Christin Hauschild, Tim Beißbarth, Andreas Holzinger, Dominik Heider
2023	J	`jnl`	Human-in-the-Loop Causal Discovery under Latent Confounding using Ancestral GFlowNets. CoRR Tiago da Silva, Eliezer S. Silva, Adèle H. Ribeiro, António Góis, Dominik Heider, Samuel Kaski, Diego Mesquita
2023	C	`conf`	Human-in-the-Loop Integration with Domain-Knowledge Graphs for Explainable Federated Deep Learning. CD-MAKE Andreas Holzinger, Anna Saranti, Anne-Christin Hauschild, Jacqueline Michelle Beinecke, Dominik Heider, Richard Röttger, Heimo Müller, Jan Baumbach, Bastian Pfeifer
2023	J	`jnl`	Interactive polar diagrams for model comparison. Comput. Methods Programs Biomed. Aleksandar Anzel, Dominik Heider, Georges Hattab
2023	J	`jnl`	ODNA: identification of organellar DNA by machine learning. Bioinform. Roman Martin, Minh Kien Nguyen, Nick Lowack, Dominik Heider
2023	J	`jnl`	Unsupervised encoding selection through ensemble pruning for biomedical classification. BioData Min. Sebastian Spänig, Alexander Michel, Dominik Heider
2022	J	`jnl`	Evaluation of machine learning strategies for imaging confirmed prostate cancer recurrence prediction on electronic health records. Comput. Biol. Medicine Jacqueline Michelle Beinecke, Patrick Anders, Tino Schurrat, Dominik Heider, Markus Luster, Damiano Librizzi, Anne-Christin Hauschild
2022	J	`jnl`	Federated Random Forests can improve local performance of predictive models for various healthcare applications. Bioinform. Anne-Christin Hauschild, Marta Lemanczyk, Julian O. Matschinske, Tobias Frisch, Olga I. Zolotareva, Andreas Holzinger, Jan Baumbach, Dominik Heider
2022	J	`jnl`	Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. Bioinform. Yunxiao Ren, Trinad Chakraborty, Swapnil Doijad, Linda Falgenhauer, Jane Falgenhauer, Alexander Goesmann, Anne-Christin Hauschild, Oliver Schwengers, Dominik Heider
2021	J	`jnl`	Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
2021	J	`jnl`	Correction: Ten simple rules to colorize biological data visualization. PLoS Comput. Biol. Georges Hattab, Theresa-Marie Rhyne, Dominik Heider
2021	J	`jnl`	Gaussian noise up-sampling is better suited than SMOTE and ADASYN for clinical decision making. BioData Min. Jacqueline Michelle Beinecke, Dominik Heider
2021	J	`jnl`	MOSGA: Modular Open-Source Genome Annotator. Bioinform. Roman Martin, Thomas Hackl, Georges Hattab, Matthias G. Fischer, Dominik Heider
2021	J	`jnl`	Machine learning with asymmetric abstention for biomedical decision-making. BMC Medical Informatics Decis. Mak. Mariem Gandouz, Hajo Holzmann, Dominik Heider
2021	J	`jnl`	The FeatureCloud AI Store for Federated Learning in Biomedicine and Beyond. CoRR Julian O. Matschinske, Julian Späth, Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Anne Hartebrodt, Balázs Orbán, Sándor Fejér, Olga I. Zolotareva, Mohammad Bakhtiari, Béla Bihari, Marcus D. Bloice, Nina C. Donner, Walid Fdhila, Tobias Frisch, Anne-Christin Hauschild, Dominik Heider, Andreas Holzinger, Walter Hötzendorfer, Jan Hospes, Tim Kacprowski, Markus Kastelitz, Markus List, Rudolf Mayer, Mónika Moga, Heimo Müller, Anastasia Pustozerova, Richard Röttger, Anna Saranti, Harald H. H. W. Schmidt, Christof Tschohl, Nina Kerstin Wenke, Jan Baumbach
2020	J	`jnl`	Deep learning on chaos game representation for proteins. Bioinform. Hannah F. Löchel, Dominic Eger, Theodor Sperlea, Dominik Heider
2020	J	`jnl`	MESA: automated assessment of synthetic DNA fragments and simulation of DNA synthesis, storage, sequencing and PCR errors. Bioinform. Michael Schwarz, Marius Welzel, Tolganay Kabdullayeva, Anke Becker, Bernd Freisleben, Dominik Heider
2020	J	`jnl`	Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads. BMC Bioinform. Marius Welzel, Anja Lange, Dominik Heider, Michael Schwarz, Bernd Freisleben, Manfred Jensen, Jens Boenigk, Daniela Beisser
2020	J	`jnl`	Privacy-preserving Artificial Intelligence Techniques in Biomedicine. CoRR Reihaneh Torkzadehmahani, Reza Nasirigerdeh, David B. Blumenthal, Tim Kacprowski, Markus List, Julian O. Matschinske, Julian Späth, Nina Kerstin Wenke, Béla Bihari, Tobias Frisch, Anne Hartebrodt, Anne-Christin Hauschild, Dominik Heider, Andreas Holzinger, Walter Hötzendorfer, Markus Kastelitz, Rudolf Mayer, Cristian Nogales, Anastasia Pustozerova, Richard Röttger, Harald H. H. W. Schmidt, Ameli Schwalber, Christof Tschohl, Andrea Wohner, Jan Baumbach
2020	J	`jnl`	Ten simple rules to colorize biological data visualization. PLoS Comput. Biol. Georges Hattab, Theresa-Marie Rhyne, Dominik Heider
2019	J	`jnl`	Encodings and models for antimicrobial peptide classification for multi-resistant pathogens. BioData Min. Sebastian Spänig, Dominik Heider
2019	J	`jnl`	FRI - Feature Relevance Intervals for Interpretable and Interactive Data Exploration. CoRR Lukas Pfannschmidt, Christina Göpfert, Ursula Neumann, Dominik Heider, Barbara Hammer
2019	C	`conf`	FRI-Feature Relevance Intervals for Interpretable and Interactive Data Exploration. CIBCB Lukas Pfannschmidt, Christina Göpfert, Ursula Neumann, Dominik Heider, Barbara Hammer
2019	J	`jnl`	GUESS: projecting machine learning scores to well-calibrated probability estimates for clinical decision-making. Bioinform. Johanna Schwarz, Dominik Heider
2019	J	`jnl`	Phi-Delta-Diagrams: Software Implementation of a Visual Tool for Assessing Classifier and Feature Performance. Mach. Learn. Knowl. Extr. Giuliano Armano, Alessandro Giuliani, Ursula Neumann, Nikolas Rothe, Dominik Heider
2019	J	`jnl`	The Virtual Doctor: An Interactive Artificial Intelligence based on Deep Learning for Non-Invasive Prediction of Diabetes. CoRR Sebastian Spänig, Agnes Emberger-Klein, Jan-Peter Sowa, Ali Canbay, Klaus Menrad, Dominik Heider
2019	J	`jnl`	The virtual doctor: An interactive clinical-decision-support system based on deep learning for non-invasive prediction of diabetes. Artif. Intell. Medicine Sebastian Spänig, Agnes Emberger-Klein, Jan-Peter Sowa, Ali Canbay, Klaus Menrad, Dominik Heider
2018	J	`jnl`	SCOTCH: subtype A coreceptor tropism classification in HIV-1. Bioinform. Hannah F. Löchel, Mona Riemenschneider, Dmitrij Frishman, Dominik Heider
2017	J	`jnl`	EFS: an ensemble feature selection tool implemented as R-package and web-application. BioData Min. Ursula Neumann, Nikita Genze, Dominik Heider
2017	J	`jnl`	eccCL: parallelized GPU implementation of Ensemble Classifier Chains. BMC Bioinform. Mona Riemenschneider, Alexander Herbst, Ari Rasch, Sergei Gorlatch, Dominik Heider
2016	J	`jnl`	Compensation of feature selection biases accompanied with improved predictive performance for binary classification by using a novel ensemble feature selection approach. BioData Min. Ursula Neumann, Mona Riemenschneider, Jan-Peter Sowa, Theodor Baars, Julia Kälsch, Ali Canbay, Dominik Heider
2016	J	`jnl`	Exploiting HIV-1 protease and reverse transcriptase cross-resistance information for improved drug resistance prediction by means of multi-label classification. BioData Min. Mona Riemenschneider, Robin Senge, Ursula Neumann, Eyke Hüllermeier, Dominik Heider
2016	J	`jnl`	SHIVA - a web application for drug resistance and tropism testing in HIV. BMC Bioinform. Mona Riemenschneider, Thomas Hummel, Dominik Heider
2016	—	`conf`	The EFS-Server: A Web-Application for Feature Selection in Binary Classification. KDWeb Ursula Neumann, Dominik Heider
2014	J	`jnl`	A simple structure-based model for the prediction of HIV-1 co-receptor tropism. BioData Min. Dominik Heider, Jan Dybowski, Christoph Wilms, Daniel Hoffmann
2014	J	`jnl`	gCUP: rapid GPU-based HIV-1 co-receptor usage prediction for next-generation sequencing. Bioinform. Michael Olejnik, Michel Steuwer, Sergei Gorlatch, Dominik Heider
2013	J	`jnl`	Multilabel classification for exploiting cross-resistance information in HIV-1 drug resistance prediction. Bioinform. Dominik Heider, Robin Senge, Weiwei Cheng, Eyke Hüllermeier
2013	—	`conf`	On the Application of Supervised Machine Learning to Trustworthiness Assessment. TrustCom/ISPA/IUCC Sascha Hauke, Sebastian Biedermann, Max Mühlhäuser, Dominik Heider
2012	C	`conf`	The Brain in a Box - An Encoding Scheme for Natural Neural Networks. IJCCI Martin Pyka, Tilo Kircher, Sascha Hauke, Dominik Heider
2012	—	`conf`	Unsupervised Dimension Reduction Methods for Protein Sequence Classification. GfKl Dominik Heider, Christoph Bartenhagen, Jan Nikolaj Dybowski, Sascha Hauke, Martin Pyka, Daniel Hoffmann
2011	J	`jnl`	Computational Design of a DNA- and Fc-Binding Fusion Protein. Adv. Bioinformatics Jonas Winkler, Giuliano Armano, Jan Nikolaj Dybowski, Oliver Kuhn, Filippo Ledda, Dominik Heider
2011	J	`jnl`	Group-Agreement as a Reliability Measure for Witness Recommendations in Reputation-Based Trust Protocols. Trans. Comput. Sci. Sascha Hauke, Martin Pyka, Dominik Heider
2011	J	`jnl`	Improved Bevirimat resistance prediction by combination of structural and sequence-based classifiers. BioData Min. Jan Nikolaj Dybowski, Mona Riemenschneider, Sascha Hauke, Martin Pyka, Jens Verheyen, Daniel Hoffmann, Dominik Heider
2011	J	`jnl`	Interpol: An R package for preprocessing of protein sequences. BioData Min. Dominik Heider, Daniel Hoffmann
2011	—	`ch.`	Reputation-Based Trust Diffusion in Complex Socio-Economic Networks. Information Retrieval and Mining in Distributed Environments Sascha Hauke, Martin Pyka, Markus Borschbach, Dominik Heider
2010	Misc	`conf`	Augmenting Reputation-Based Trust Metrics with Rumor-Like Dissemination of Reputation Information. SEC Sascha Hauke, Martin Pyka, Markus Borschbach, Dominik Heider
2010	C	`conf`	Harnessing Recommendations from Weakly Linked Neighbors in Reputation-Based Trust Formation. CW Sascha Hauke, Martin Pyka, Markus Borschbach, Dominik Heider
2010	J	`jnl`	Predicting Bevirimat resistance of HIV-1 from genotype. BMC Bioinform. Dominik Heider, Jens Verheyen, Daniel Hoffmann
2010	J	`jnl`	Prediction of Co-Receptor Usage of HIV-1 from Genotype. PLoS Comput. Biol. Jan Nikolaj Dybowski, Dominik Heider, Daniel Hoffmann
2010	J	`jnl`	fMRI Data Visualization with BrainBlend and Blender. Neuroinformatics Martin Pyka, Matthias Hertog, Raul Fernandez, Sascha Hauke, Dominik Heider, Udo Dannlowski, Carsten Konrad
2008	—	`—`	DNA based watermarks. Dominik Heider
2008	J	`jnl`	Watermarking sexually reproducing diploid organisms. Bioinform. Dominik Heider, Daniel Kessler, Angelika Barnekow
2007	J	`jnl`	DNA-based watermarks using the DNA-Crypt algorithm. BMC Bioinform. Dominik Heider, Angelika Barnekow