Dokyoon Kim

40 papers Misc 7Journal 26Unranked 7
YearRankTypeTitle / Venue / Authors
2026 J jnl
iSight: Towards expert-AI co-assessment for improved immunohistochemistry staining interpretation.
CoRR
Jacob S. Leiby, Jialu Yao, Pan Lu, George Hu, Anna Davidian, Shunsuke Koga, Olivia Leung, Pravin Patel, Isabella Tondi Resta, Rebecca Rojansky, Derek Sung, Eric Yang, Paul J. Zhang, Emma Lundberg, Dokyoon Kim, Serena Yeung-Levy, James Zou, Thomas Montine, Jeffrey J. Nirschl, Zhi Huang
2025 J jnl
Clinically aligned multi-modal image-text model for pan-cancer prognosis prediction.
BioData Min.
Jonghyun Lee, Jacob S. Leiby, Lina Takemaru, Yidi Huang, Myung-Giun Noh, Jaesik Kim, Byonghan Lee, Mattew E. Lee, Derek A. Oldridge, Young-Gyu Eun, Hyun Jee Lee, Young Chan Lee, Dokyoon Kim
2025 — conf
Evaluation of Multi-Agent LLMs in Multidisciplinary Team Decision-Making for Challenging Cancer Cases.
MLHC
Jaesik Kim, Byounghan Lee, Kyung-Ah Sohn, Dokyoon Kim, Young Chan Lee
2025 J jnl
Explainable multiplex graph propagational network with multimodal neuroimage integration for dementia subtype diagnosis.
Neural Networks
Sunghong Park, Dong-Gi Lee, Juhyeon Kim, Dokyoon Kim, Yonghyun Nam, Bumhee Park, Narae Kim, Seulgi Lee, Changhyung Hong, Sang Joon Son, Hyunwoong Roh, Hyun Goo Woo, Hyunjung Shin
2025 J jnl
GeOKG: geometry-aware knowledge graph embedding for Gene Ontology and genes.
Bioinform.
Chang-Uk Jeong, Jaesik Kim, Dokyoon Kim, Kyung-Ah Sohn
2024 J jnl
A machine learning approach using conditional normalizing flow to address extreme class imbalance problems in personal health records.
BioData Min.
Yeongmin Kim, Wongyung Choi, Woojeong Choi, Grace Ko, Seonggyun Han, Hwan-Cheol Kim, Dokyoon Kim, Dong-Gi Lee, Dong Wook Shin, Younghee Lee
2024 J jnl
Frequency Domain Deep Learning With Non-Invasive Features for Intraoperative Hypotension Prediction.
IEEE J. Biomed. Health Informatics
Jeong-Hyeon Moon, Garam Lee, Seung Mi Lee, Jiho Ryu, Dokyoon Kim, Kyung-Ah Sohn
2024 J jnl
Multimodal Fusion-Based Lightweight Model for Enhanced Generalization in Drug-Target Interaction Prediction.
J. Chem. Inf. Model.
Jonghyun Lee, Dokyoon Kim, Dae Won Jun, Yun Kim
2024 — conf
NetPRS: SNP Interaction Aware Network-Based Polygenic Risk Score for Alzheimer's Disease.
BHI
Sunghong Park, Dong-Gi Lee, Juhyeon Kim, Doyoon Kim, Changhyung Hong, Sang Joon Son, Hyunwoong Roh, Kanghee Park, Dokyoon Kim, Hyunjung Shin, Hyun Goo Woo
2024 J jnl
Non-invasive prediction of massive transfusion during surgery using intraoperative hemodynamic monitoring data.
J. Biomed. Informatics
Doyun Kwon, Young Mi Jung, Hyung-Chul Lee, Tae Kyong Kim, Kwangsoo Kim, Garam Lee, Dokyoon Kim, Seung-Bo Lee, Seung Mi Lee
2024 J jnl
Plasma protein-based identification of neuroimage-driven subtypes in mild cognitive impairment via protein-protein interaction aware explainable graph propagational network.
Comput. Biol. Medicine
Sunghong Park, Doyoon Kim, Heirim Lee, Changhyung Hong, Sang Joon Son, Hyunwoong Roh, Dokyoon Kim, Yonghyun Nam, Dong-Gi Lee, Hyunjung Shin, Hyun Goo Woo
2024 J jnl
Uncovering genetic associations in the human diseasome using an endophenotype-augmented disease network.
Bioinform.
Jakob Woerner, Vivek Sriram, Yonghyun Nam, Anurag Verma, Dokyoon Kim
2023 — conf
Data-Driven Classification of Fatty Liver From 3D Unenhanced Abdominal CT Scans.
MLMI@MICCAI (2)
Jacob S. Leiby, Matthew E. Lee, Eun Kyung Choe, Dokyoon Kim
2023 J jnl
Discovering comorbid diseases using an inter-disease interactivity network based on biobank-scale PheWAS data.
Bioinform.
Yonghyun Nam, Sang-Hyuk Jung, Jae-Seung Yun, Vivek Sriram, Pankhuri Singhal, Marta Byrska-Bishop, Anurag Verma, Hyunjung Shin, Woong-Yang Park, Hong-Hee Won, Dokyoon Kim
2023 J jnl
Modeling Path Importance for Effective Alzheimer's Disease Drug Repurposing.
CoRR
Shunian Xiang, Patrick J. Lawrence, Bo Peng, Chienwei Chiang, Dokyoon Kim, Li Shen, Xia Ning
2022 — conf
Attention-based multiple instance learning with self-supervision to predict microsatellite instability in colorectal cancer from histology whole-slide images.
EMBC
Jacob S. Leiby, Jie Hao, Gyeong Hoon Kang, Ji Won Park, Dokyoon Kim
2022 J jnl
Identifying genes associated with brain volumetric differences through tissue specific transcriptomic inference from GWAS summary data.
BMC Bioinform.
Hung Mai, Jingxuan Bao, Paul M. Thompson, Dokyoon Kim, Li Shen
2022 — conf
Mediation Analysis and Mixed-Effects Models for the Identification of Stage-specific Imaging Genetics Patterns in Alzheimer's Disease.
BIBM
Daniele Pala, Brian Lee, Xia Ning, Dokyoon Kim, Li Shen
2021 J jnl
HiG2Vec: hierarchical representations of Gene Ontology and genes in the Poincaré ball.
Bioinform.
Jaesik Kim, Dokyoon Kim, Kyung-Ah Sohn
2021 Misc conf
Innovative methodological approaches for data integration to derive patterns across diverse, large-scale biomedical datasets.
PSB
Brett K. Beaulieu-Jones, Christian Darabos, Dokyoon Kim, Anurag Verma, Shilpa Nadimpalli Kobren
2021 — conf
Interpretable temporal graph neural network for prognostic prediction of Alzheimer's disease using longitudinal neuroimaging data.
BIBM
Mansu Kim, Jaesik Kim, Jeffrey Qu, Heng Huang, Qi Long, Kyung-Ah Sohn, Dokyoon Kim, Li Shen
2021 J jnl
Multi-layered network-based pathway activity inference using directed random walks: application to predicting clinical outcomes in urologic cancer.
Bioinform.
So Yeon Kim, Eun Kyung Choe, Manu K. Shivakumar, Dokyoon Kim, Kyung-Ah Sohn
2021 Misc conf
Translational Bioinformatics: Integrating Electronic Health Record and Omics Data.
PSB
Dokyoon Kim, Ju Han Kim, Jason H. Moore
2020 J jnl
Ideas for how informaticians can get involved with COVID-19 research.
BioData Min.
Jason H. Moore, Ian Barnett, Mary Regina Boland, Yong Chen, George Demiris, Graciela Gonzalez-Hernandez, Daniel S. Herman, Blanca E. Himes, Rebecca A. Hubbard, Dokyoon Kim, Jeffrey S. Morris, Danielle L. Mowery, Marylyn D. Ritchie, Li Shen, Ryan J. Urbanowicz, John H. Holmes
2020 J jnl
Liver imaging features by convolutional neural network to predict the metachronous liver metastasis in stage I-III colorectal cancer patients based on preoperative abdominal CT scan.
BMC Bioinform.
Sangwoo Lee, Eun Kyung Choe, So Yeon Kim, Hua Sun Kim, Kyu Joo Park, Dokyoon Kim
2020 Misc conf
Session Introduction.
PSB
Shilpa Nadimpalli Kobren, Brett K. Beaulieu-Jones, Christian Darabos, Dokyoon Kim, Anurag Verma
2019 Misc conf
Session Introduction.
PSB
Shefali Setia Verma, Anurag Verma, Dokyoon Kim, Christian Darabos
2018 Misc conf
Codon bias among synonymous rare variants is associated with Alzheimer's disease imaging biomarker.
PSB
Jason E. Miller, Manu K. Shivakumar, Shannon L. Risacher, Andrew J. Saykin, Seunggeun Lee, Kwangsik Nho, Dokyoon Kim
2018 J jnl
Collective feature selection to identify crucial epistatic variants.
BioData Min.
Shefali S. Verma, Anastasia Lucas, Xinyuan Zhang, Yogasudha Veturi, Scott M. Dudek, Binglan Li, Ruowang Li, Ryan J. Urbanowicz, Jason H. Moore, Dokyoon Kim, Marylyn D. Ritchie
2017 J jnl
Knowledge-driven binning approach for rare variant association analysis: application to neuroimaging biomarkers in Alzheimer's disease.
BMC Medical Informatics Decis. Mak.
Dokyoon Kim, Anna Okula Basile, Lisa Bang, Emrin Horgusluoglu, Seunggeun Lee, Marylyn D. Ritchie, Andrew J. Saykin, Kwangsik Nho
2017 J jnl
Using knowledge-driven genomic interactions for multi-omics data analysis: metadimensional models for predicting clinical outcomes in ovarian carcinoma.
J. Am. Medical Informatics Assoc.
Dokyoon Kim, Ruowang Li, Anastasia Lucas, Shefali S. Verma, Scott M. Dudek, Marylyn D. Ritchie
2016 Misc conf
Biofilter as a Functional Annotation Pipeline for Common and Rare Copy Number Burden.
PSB
Dokyoon Kim, Anastasia Lucas, Joseph Glessner, Shefali S. Verma, Yukiko Bradford, Ruowang Li, Alex T. Frase, Hakon Hakonarson, Peggy L. Peissig, Murray H. Brilliant, Marylyn D. Ritchie
2016 J jnl
Identification of genetic interaction networks via an evolutionary algorithm evolved Bayesian network.
BioData Min.
Ruowang Li, Scott M. Dudek, Dokyoon Kim, Molly A. Hall, Yukiko Bradford, Peggy L. Peissig, Murray H. Brilliant, James G. Linneman, Catherine A. McCarty, Le Bao, Marylyn D. Ritchie
2015 Misc conf
Binning Somatic Mutations Based on Biological Knowledge for Predicting Survival: An Application in Renal Cell Carcinoma.
Pacific Symposium on Biocomputing
Dokyoon Kim, Ruowang Li, Scott M. Dudek, John R. Wallace, Marylyn D. Ritchie
2015 J jnl
Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction.
J. Am. Medical Informatics Assoc.
Dokyoon Kim, Je-Gun Joung, Kyung-Ah Sohn, Hyunjung Shin, Yu Rang Park, Marylyn D. Ritchie, Ju Han Kim
2015 J jnl
Predicting censored survival data based on the interactions between meta-dimensional omics data in breast cancer.
J. Biomed. Informatics
Dokyoon Kim, Ruowang Li, Scott M. Dudek, Marylyn D. Ritchie
2013 — conf
A Graph-Based Integration of Multimodal Brain Imaging Data for the Detection of Early Mild Cognitive Impairment (E-MCI).
MBIA
Dokyoon Kim, Sungeun Kim, Shannon L. Risacher, Li Shen, Marylyn D. Ritchie, Michael W. Weiner, Andrew J. Saykin, Kwangsik Nho
2013 J jnl
ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network.
BioData Min.
Dokyoon Kim, Ruowang Li, Scott M. Dudek, Marylyn D. Ritchie
2013 J jnl
Intra-relation reconstruction from inter-relation: miRNA to gene expression.
BMC Syst. Biol.
Dokyoon Kim, Hyunjung Shin, Je-Gun Joung, Su-Yeon Lee, Ju Han Kim
2013 J jnl
Relative impact of multi-layered genomic data on gene expression phenotypes in serous ovarian tumors.
BMC Syst. Biol.
Kyung-Ah Sohn, Dokyoon Kim, Jaehyun Lim, Ju Han Kim