Dmitry Korkin

27 papers A* 2A 1B 2Journal 17Unranked 4
YearRankTypeTitle / Venue / Authors
2022 J jnl
Finding shortest and nearly shortest path nodes in large substantially incomplete networks.
CoRR
Maksim Kitsak, Alexander A. Ganin, Ahmed Elmokashfi, Hongzhu Cui, Daniel A. Eisenberg, David L. Alderson, Dmitry Korkin, Igor Linkov
2022 J jnl
PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web.
Database J. Biol. Databases Curation
Tuan-Dung Le, Phuong D. Nguyen, Dmitry Korkin, Thanh Thieu
2021 B conf
A high-throughput, online tool for investigating host-pathogen macromolecular interactions buried in scientific literature.
CHASE
Tuan-Dung Le, Phuong D. Nguyen, Dmitry Korkin, Thanh Thieu
2020 — conf
An Exploratory Study of Social Media Analysis for Rare Diseases Using Machine Learning Algorithms: A Case Study of Trigeminal Neuralgia.
HICSS
Haadi Mombini, Ruojun Li, Yixin Zhang, Dmitry Korkin, Bengisu Tulu
2020 J jnl
Boosting gene expression clustering with system-wide biological information: a robust autoencoder approach.
Int. J. Comput. Biol. Drug Des.
Hongzhu Cui, Chong Zhou, Xinyu Dai, Yuting Liang, Randy C. Paffenroth, Dmitry Korkin
2019 J jnl
DISPOT: a simple knowledge-based protein domain interaction statistical potential.
Bioinform.
Oleksandr Narykov, Dmytro Bogatov, Dmitry Korkin
2017 — ed.
2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017, Kansas City, MO, USA, November 13-16, 2017
BIBM
Xiaohua Hu, Chi-Ren Shyu, Yana Bromberg, Jean Gao, Yang Gong, Dmitry Korkin, Illhoi Yoo, Huiru Jane Zheng
2016 J jnl
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.
Database J. Biol. Databases Curation
Xingyan Kuang, Andi Dhroso, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin
2016 — conf
Effect-specific analysis of pathogenic SNVs in human interactome: Leveraging edge-based network robustness.
EMBC
Hongzhu Cui, Dmitry Korkin
2016 J jnl
Patterns of amino acid conservation in human and animal immunodeficiency viruses.
Bioinform.
Olga S. Voitenko, Andi Dhroso, Anna Feldmann, Dmitry Korkin, Olga V. Kalinina
2015 J jnl
An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites.
IEEE ACM Trans. Comput. Biol. Bioinform.
Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu
2014 J jnl
Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning.
PLoS Comput. Biol.
Nan Zhao, Jing Ginger Han, Chi-Ren Shyu, Dmitry Korkin
2014 J jnl
Uncovering influence links in molecular knowledge networks to streamline personalized medicine.
J. Biomed. Informatics
Dmitriy Shin, Gerald C. Arthur, Mihail Popescu, Dmitry Korkin, Chi-Ren Shyu
2013 — conf
PBSalign: Sequence-independent local alignment of protein binding sites.
BIBM
Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu
2012 J jnl
DOMMINO: a database of macromolecular interactions.
Nucleic Acids Res.
Xingyan Kuang, Jing Ginger Han, Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin
2012 J jnl
Fast protein binding site comparisons using visual words representation.
Bioinform.
Bin Pang, Nan Zhao, Dmitry Korkin, Chi-Ren Shyu
2012 J jnl
Literature mining of host-pathogen interactions: comparing feature-based supervised learning and language-based approaches.
Bioinform.
Thanh Thieu, Sneha Joshi, Samantha Warren, Dmitry Korkin
2012 J jnl
PBSword: a web server for searching similar protein-protein binding sites.
Nucleic Acids Res.
Bin Pang, Xingyan Kuang, Nan Zhao, Dmitry Korkin, Chi-Ren Shyu
2011 J jnl
A Fast Multiple Longest Common Subsequence (MLCS) Algorithm.
IEEE Trans. Knowl. Data Eng.
Qingguo Wang, Dmitry Korkin, Yi Shang
2010 A* conf
A Fast Heuristic Search Algorithm for Finding the Longest Common Subsequence of Multiple Strings.
AAAI
Qingguo Wang, Mian Pan, Yi Shang, Dmitry Korkin
2010 — conf
An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches.
BIBM
Nan Zhao, Bin Pang, Chi-Ren Shyu, Dmitry Korkin
2010 J jnl
ProteinDBS v2.0: a web server for global and local protein structure search.
Nucleic Acids Res.
Chi-Ren Shyu, Bin Pang, Pin-Hao Chi, Nan Zhao, Dmitry Korkin, Dong Xu
2009 A* conf
Efficient Dominant Point Algorithms for the Multiple Longest Common Subsequence (MLCS) Problem.
IJCAI
Qingguo Wang, Dmitry Korkin, Yi Shang
2009 J jnl
Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments.
Bioinform.
Pin-Hao Chi, Bin Pang, Dmitry Korkin, Chi-Ren Shyu
2008 B conf
An Efficient Parallel Algorithm for the Multiple Longest Common Subsequence (MLCS) Problem.
ICPP
Dmitry Korkin, Qingguo Wang, Yi Shang
2006 J jnl
Structural Modeling of Protein Interactions by Analogy: Application to PSD-95.
PLoS Comput. Biol.
Dmitry Korkin, Fred P. Davis, Frank Alber, Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B. Kennedy, Andrej Sali
2002 A conf
Multiple genome rearrangement: a general approach via the evolutionary genome graph.
ISMB
Dmitry Korkin, Lev Goldfarb