Dmitry Filimonov

27 papers Journal 27

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Current Trends and Future Opportunities of AI-Based Analysis in Mesenchymal Stem Cell Imaging: A Scoping Review. J. Imaging Maksim Solopov, Elizaveta Chechekhina, Viktor Turchin, Andrey Popandopulo, Dmitry Filimonov, Anzhelika Burtseva, Roman Ishchenko
2025	J	`jnl`	Evaluation of Transfer Learning Efficacy for Surgical Suture Quality Classification on Limited Datasets. J. Imaging Roman Ishchenko, Maksim Solopov, Andrey Popandopulo, Elizaveta Chechekhina, Viktor Turchin, Fedor Popivnenko, Aleksandr Ermak, Konstantyn Ladyk, Anton Konyashin, Kirill Golubitskiy, Aleksei Burtsev, Dmitry Filimonov
2023	J	`jnl`	HGMMX: Host Gut Microbiota Metabolism Xenobiotics Database. J. Chem. Inf. Model. Anton S. Kolodnitsky, Nikita Ionov, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov
2023	J	`jnl`	Phyto4Health: Database of Phytocomponents from Russian Pharmacopoeia Plants. J. Chem. Inf. Model. Nikita Ionov, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov
2023	J	`jnl`	Prediction of pathogenic single amino acid substitutions using molecular fragment descriptors. Bioinform. Anton Zadorozhny, Anton Smirnov, Dmitry Filimonov, Alexey Lagunin
2022	J	`jnl`	Chemical named entity recognition in the texts of scientific publications using the naïve Bayes classifier approach. J. Cheminformatics Olga A. Tarasova, Anastasia V. Rudik, Nadezhda Yu. Biziukova, Dmitry Filimonov, Vladimir Poroikov
2022	J	`jnl`	The method predicting interaction between protein targets and small-molecular ligands with the wide applicability domain. Comput. Biol. Chem. Dmitry A. Karasev, Boris Sobolev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2021	J	`jnl`	Extraction of Data on Parent Compounds and Their Metabolites from Texts of Scientific Abstracts. J. Chem. Inf. Model. Olga A. Tarasova, Nadezhda Yu. Biziukova, Anastassia V. Rudik, Alexander V. Dmitriev, Dmitry Filimonov, Vladimir Poroikov
2020	J	`jnl`	AntiHIV-Pred: web-resource for in silico prediction of anti-HIV/AIDS activity. Bioinform. Leonid A. Stolbov, Dmitry S. Druzhilovskiy, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov, Marc C. Nicklaus
2020	J	`jnl`	Computational Approaches To Identify A Hidden Pharmacological Potential In Large Chemical Libraries. Supercomput. Front. Innov. Dmitry S. Druzhilovskiy, Leonid A. Stolbov, Polina I. Savosina, Pavel V. Pogodin, Dmitry Filimonov, Alexander V. Veselovsky, Karen Stefanisko, Nadya I. Tarasova, Marc C. Nicklaus, Vladimir Poroikov
2019	J	`jnl`	AntiBac-Pred: A Web Application for Predicting Antibacterial Activity of Chemical Compounds. J. Chem. Inf. Model. Pavel V. Pogodin, Alexey Lagunin, Anastasia V. Rudik, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov
2019	J	`jnl`	Assessment of the cardiovascular adverse effects of drug-drug interactions through a combined analysis of spontaneous reports and predicted drug-target interactions. PLoS Comput. Biol. Sergey Ivanov, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2019	J	`jnl`	Data Mining Approach for Extraction of Useful Information About Biologically Active Compounds from Publications. J. Chem. Inf. Model. Olga A. Tarasova, Nadezhda Yu. Biziukova, Dmitry Filimonov, Vladimir Poroikov, Marc C. Nicklaus
2019	J	`jnl`	Metatox - Web application for generation of metabolic pathways and toxicity estimation. J. Bioinform. Comput. Biol. Anastasiya V. Rudik, Vladislav M. Bezhentsev, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2018	J	`jnl`	ADVERPred-Web Service for Prediction of Adverse Effects of Drugs. J. Chem. Inf. Model. Sergey Ivanov, Alexey Lagunin, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov
2018	J	`jnl`	ROSC-Pred: web-service for rodent organ-specific carcinogenicity prediction. Bioinform. Alexey Lagunin, Anastasia V. Rudik, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov
2017	J	`jnl`	MetaTox: Web Application for Predicting Structure and Toxicity of Xenobiotics' Metabolites. J. Chem. Inf. Model. Anastasia V. Rudik, Vladislav M. Bezhentsev, Alexander V. Dmitriev, Dmitry S. Druzhilovskiy, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2017	J	`jnl`	PASS-based approach to predict HIV-1 reverse transcriptase resistance. J. Bioinform. Comput. Biol. Olga A. Tarasova, Dmitry Filimonov, Vladimir Poroikov
2016	J	`jnl`	Prediction of reacting atoms for the major biotransformation reactions of organic xenobiotics. J. Cheminformatics Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2015	J	`jnl`	QSAR Modeling Using Large-Scale Databases: Case Study for HIV-1 Reverse Transcriptase Inhibitors. J. Chem. Inf. Model. Olga A. Tarasova, Aleksandra F. Urusova, Dmitry Filimonov, Marc C. Nicklaus, Alexey V. Zakharov, Vladimir Poroikov
2015	J	`jnl`	SOMP: web server for Bioinform. Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2014	J	`jnl`	Metabolism Site Prediction Based on Xenobiotic Structural Formulas and PASS Prediction Algorithm. J. Chem. Inf. Model. Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2013	J	`jnl`	DIGEP-Pred: web service for Bioinform. Alexey Lagunin, Sergey Ivanov, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov
2010	J	`jnl`	Collaborative development of predictive toxicology applications. J. Cheminformatics Barry J. Hardy, Nicki Douglas, Christoph Helma, Micha Rautenberg, Nina Jeliazkova, Vedrin Jeliazkov, Ivelina Nikolova, Romualdo Benigni, Olga Tcheremenskaia, Stefan Kramer, Tobias Girschick, Fabian Buchwald, Jörg Wicker, Andreas Karwath, Martin Gütlein, Andreas Maunz, Haralambos Sarimveis, Georgia Melagraki, Antreas Afantitis, Pantelis Sopasakis, David Gallagher, Vladimir Poroikov, Dmitry Filimonov, Alexey V. Zakharov, Alexey Lagunin, Tatyana Gloriozova, Sergey Novikov, Natalia Skvortsova, Dmitry S. Druzhilovskiy, Sunil Chawla, Indira Ghosh, Surajit Ray, Hitesh Patel, Sylvia Escher
2010	J	`jnl`	Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates. BMC Bioinform. Boris Sobolev, Dmitry Filimonov, Alexey Lagunin, Alexey V. Zakharov, Olga Koborova, Alexander E. Kel, Vladimir Poroikov
2008	J	`jnl`	Recognition of protein Function Using the Local Similarity. J. Bioinform. Comput. Biol. Kirill Alexandrov, Boris Sobolev, Dmitry Filimonov, Vladimir Poroikov
2005	J	`jnl`	Why relevant chemical information cannot be exchanged without disclosing structures. J. Comput. Aided Mol. Des. Dmitry Filimonov, Vladimir Poroikov