Dmitrij Frishman

56 papers Journal 51Unranked 5
YearRankTypeTitle / Venue / Authors
2024 — conf
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans.
RECOMB-CG
Alma Davidson, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller
2021 J jnl
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins.
Briefings Bioinform.
Jan Zaucha, Michael Heinzinger, A. Kulandaisamy, Evans Kataka, Óscar Llorian Salvádor, Petr Popov, Burkhard Rost, M. Michael Gromiha, Boris S. Zhorov, Dmitrij Frishman
2021 J jnl
TCRpair: prediction of functional pairing between HLA-A*02: 01-restricted T-cell receptor α and β chains.
Bioinform.
Anja Mösch, Dmitrij Frishman
2020 J jnl
AllesTM: predicting multiple structural features of transmembrane proteins.
BMC Bioinform.
Peter Hönigschmid, Stephan Breimann, Martina Weigl, Dmitrij Frishman
2018 J jnl
Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation.
PLoS Comput. Biol.
Fei Qi, Magdalena Motz, Kirsten Jung, Jürgen Lassak, Dmitrij Frishman
2018 J jnl
MutHTP: mutations in human transmembrane proteins.
Bioinform.
A. Kulandaisamy, S. Binny Priya, R. Sakthivel, Svetlana Tarnovskaya, Ilya Bizin, Peter Hönigschmid, Dmitrij Frishman, M. Michael Gromiha
2018 J jnl
SCOTCH: subtype A coreceptor tropism classification in HIV-1.
Bioinform.
Hannah F. Löchel, Mona Riemenschneider, Dmitrij Frishman, Dominik Heider
2017 J jnl
Assessment of cancer and virus antigens for cross-reactivity in human tissues.
Bioinform.
Victor Jaravine, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman
2015 J jnl
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea.
BMC Bioinform.
David M. Kristensen, Usman Saeed, Dmitrij Frishman, Eugene V. Koonin
2015 J jnl
Expitope: a web server for epitope expression.
Bioinform.
Kerstin Haase, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman
2014 J jnl
Challenges in RNA virus bioinformatics.
Bioinform.
Manja Marz, Niko Beerenwinkel, Christian Drosten, Markus Fricke, Dmitrij Frishman, Ivo L. Hofacker, Dieter Hoffmann, Martin Middendorf, Thomas Rattei, Peter F. Stadler, Armin Töpfer
2014 J jnl
Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis.
Nucleic Acids Res.
Philipp Blohm, Goar Frishman, Pawel Smialowski, Florian Goebels, Benedikt Wachinger, Andreas Ruepp, Dmitrij Frishman
2013 J jnl
Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins.
PLoS Comput. Biol.
Stefka Tyanova, Jürgen Cox, Jesper V. Olsen, Matthias Mann, Dmitrij Frishman
2013 J jnl
Prediction of protein interaction types based on sequence and network features.
BMC Syst. Biol.
Florian Goebels, Dmitrij Frishman
2013 J jnl
QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis.
Nucleic Acids Res.
Dmitry N. Ivankov, Natalya S. Bogatyreva, Peter Hönigschmid, Bastian Dislich, Sebastian Hogl, Peer-Hendrik Kuhn, Dmitrij Frishman, Stefan F. Lichtenthaler
2013 J jnl
RNAtips: analysis of temperature-induced changes of RNA secondary structure.
Nucleic Acids Res.
Andrey Chursov, Sebastian J. Kopetzky, Gennady Bocharov, Dmitrij Frishman, Alexander Shneider
2013 J jnl
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Big Data
Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl
2011 J jnl
DIMA 3.0: Domain Interaction Map.
Nucleic Acids Res.
Qibin Luo, Philipp Pagel, Baiba Vilne, Dmitrij Frishman
2011 J jnl
MIPS: curated databases and comprehensive secondary data resources in 2010.
Nucleic Acids Res.
Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis, Thomas Rattei, Mathias C. Walter, Dmitrij Frishman, Karsten Suhre, Manuel Spannagl, Klaus F. X. Mayer, Volker Stümpflen, Alexey V. Antonov
2010 J jnl
Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions.
PLoS Comput. Biol.
Andreas Kowarsch, Angelika Fuchs, Dmitrij Frishman, Philipp Pagel
2010 J jnl
Pitfalls of supervised feature selection.
Bioinform.
Pawel Smialowski, Dmitrij Frishman, Stefan Kramer
2010 J jnl
TargetSpy: a supervised machine learning approach for microRNA target prediction.
BMC Bioinform.
Martin Sturm, Michael Hackenberg, David Langenberger, Dmitrij Frishman
2010 J jnl
The Negatome database: a reference set of non-interacting protein pairs.
Nucleic Acids Res.
Pawel Smialowski, Philipp Pagel, Philip Wong, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, Corinna Montrone, Thomas Rattei, Dmitrij Frishman, Andreas Ruepp
2009 J jnl
PEDANT covers all complete RefSeq genomes.
Nucleic Acids Res.
Mathias C. Walter, Thomas Rattei, Roland Arnold, Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner Mewes, Dmitrij Frishman
2008 J jnl
DIMA 2.0 - predicted and known domain interactions.
Nucleic Acids Res.
Philipp Pagel, Matthias Oesterheld, Oksana Tovstukhina, Normann Strack, Volker Stümpflen, Dmitrij Frishman
2008 J jnl
MIPS: analysis and annotation of genome information in 2007.
Nucleic Acids Res.
Hans-Werner Mewes, Sabine Dietmann, Dmitrij Frishman, Richard Gregory, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Münsterkötter, Andreas Ruepp, Manuel Spannagl, Volker Stümpflen, Thomas Rattei
2007 J jnl
Applying negative rule mining to improve genome annotation.
BMC Bioinform.
Irena I. Artamonova, Goar Frishman, Dmitrij Frishman
2007 J jnl
Co-evolving residues in membrane proteins.
Bioinform.
Angelika Fuchs, Antonio J. Martin-Galiano, Matan Kalman, Sarel Jacob Fleishman, Nir Ben-Tal, Dmitrij Frishman
2007 J jnl
PEDANT genome database: 10 years online.
Nucleic Acids Res.
M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans-Werner Mewes, Dmitrij Frishman
2007 J jnl
Protein solubility: sequence based prediction and experimental verification.
Bioinform.
Pawel Smialowski, Antonio J. Martin-Galiano, Aleksandra Mikolajka, Tobias Girschick, Tad A. Holak, Dmitrij Frishman
2006 J jnl
Fold Designability, Distribution, and Disease.
PLoS Comput. Biol.
Philip Wong, Dmitrij Frishman
2006 J jnl
MIPS: analysis and annotation of proteins from whole genomes in 2005.
Nucleic Acids Res.
Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen
2006 J jnl
PROMPT: a protein mapping and comparison tool.
BMC Bioinform.
Thorsten Schmidt, Dmitrij Frishman
2006 J jnl
The DIMA web resource - exploring the protein domain network.
Bioinform.
Philipp Pagel, Matthias Oesterheld, Volker Stümpflen, Dmitrij Frishman
2006 J jnl
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.
Nucleic Acids Res.
Andreas Ruepp, Octave Noubibou Doudieu, Jos van den Oever, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Christine Skornia, Steffi Wanka, Thomas Rattei, Philipp Pagel, M. Louise Riley, Dmitrij Frishman, Dimitrij Surmeli, Igor V. Tetko, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes
2005 J jnl
Alternative splicing and protein function.
BMC Bioinform.
A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov
2005 J jnl
Mining sequence annotation databanks for association patterns.
Bioinform.
Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand, Dmitrij Frishman
2005 J jnl
The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics:
Bioinform.
Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman
2005 J jnl
The MIPS mammalian protein?Cprotein interaction database.
Bioinform.
Philipp Pagel, Stefan Kovac, Matthias Oesterheld, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Pekka Mark, Volker Stümpflen, Hans-Werner Mewes, Andreas Ruepp, Dmitrij Frishman
2005 J jnl
The PEDANT genome database in 2005.
Nucleic Acids Res.
M. Louise Riley, Thorsten Schmidt, Christian Wagner, Hans-Werner Mewes, Dmitrij Frishman
2004 J jnl
MIPS: analysis and annotation of proteins from whole genomes.
Nucleic Acids Res.
Hans-Werner Mewes, Clara Amid, Roland Arnold, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Philipp Pagel, Normann Strack, Volker Stümpflen, Jens Warfsmann, Andreas Ruepp
2004 J jnl
No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.
BMC Bioinform.
Marc N. Offman, Ramil N. Nurtdinov, Mikhail S. Gelfand, Dmitrij Frishman
2004 J jnl
STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins.
Nucleic Acids Res.
Matthias Heinig, Dmitrij Frishman
2003 — conf
Conservation of protein-protein interactions among Ascomycota species.
German Conference on Bioinformatics
Philipp Pagel, Hans-Werner Mewes, Dmitrij Frishman
2003 J jnl
Phylogenetic Web Profiler.
Bioinform.
Philip Wong, Grigory Kolesov, Dmitrij Frishman, Walid A. Houry
2003 J jnl
The PEDANT genome database.
Nucleic Acids Res.
Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, Christian Gruber, Birgitta Geier, Andreas Kaps, Kaj Albermann, Andreas Volz, Christian Wagner, Matthias Fellenberg, Klaus Heumann, Hans-Werner Mewes
2002 J jnl
MIPS: a database for genomes and protein sequences.
Nucleic Acids Res.
Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil
2002 J jnl
SNAPper: gene order predicts gene function.
Bioinform.
Grigory Kolesov, Hans-Werner Mewes, Dmitrij Frishman
2001 J jnl
Functional and structural genomics using PEDANT.
Bioinform.
Dmitrij Frishman, Kaj Albermann, Jean Hani, Klaus Heumann, Agnes Metanomski, Alfred Zollner, Hans-Werner Mewes
2000 J jnl
MIPS: a database for genomes and protein sequences.
Nucleic Acids Res.
Hans-Werner Mewes, Dmitrij Frishman, Christian Gruber, Birgitta Geier, Dirk Haase, Andreas Kaps, Kai Lemcke, Gertrud Mannhaupt, Friedhelm Pfeiffer, Christine M. Schüller, S. Stocker, B. Weil
1999 J jnl
MIPS: a database for genomes and protein sequences.
Nucleic Acids Res.
Hans-Werner Mewes, Klaus Heumann, Andreas Kaps, Klaus F. X. Mayer, Friedhelm Pfeiffer, S. Stocker, Dmitrij Frishman
1998 — conf
Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.
German Conference on Bioinformatics
Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand
1998 J jnl
Comprehensive, comprehensible, distributed and intelligent databases: current status.
Bioinform.
Dmitrij Frishman, Klaus Heumann, Arthur M. Lesk, Hans-Werner Mewes
1998 J jnl
MIPS: a database for protein sequences and complete genomes.
Nucleic Acids Res.
Hans-Werner Mewes, Jean Hani, Friedhelm Pfeiffer, Dmitrij Frishman
1997 — conf
The MIPS Yeast Genome Database.
German Conference on Bioinformatics
Kaj Albermann, M. Bähr, Dmitrij Frishman, A. Gleißner, Jean Hani, Klaus Heumann, Andreas Maierl, Alfred Zollner, Hans-Werner Mewes
1996 — conf
Visualization and Analysis of the Complete Yeast Genome.
German Conference on Bioinformatics - Selected Papers
Andreas Kaps, Klaus Heumann, Dmitrij Frishman, M. Bähr, Hans-Werner Mewes