Dmitri Beglov

12 papers Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites.
J. Chem. Inf. Model.
Omeir Khan, George Jones, Maria Lazou, Diane Joseph-McCarthy, Dima Kozakov, Dmitri Beglov, Sandor Vajda
2020 J jnl
Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery.
J. Chem. Inf. Model.
Amanda E. Wakefield, Christine Yueh, Dmitri Beglov, Marcelo Santos Castilho, Dima Kozakov, György M. Keserü, Adrian Whitty, Sandor Vajda
2018 J jnl
Protein-ligand docking using FFT based sampling: D3R case study.
J. Comput. Aided Mol. Des.
Dzmitry Padhorny, David R. Hall, Hanieh Mirzaei, Artem B. Mamonov, Mohammad Moghadasi, Andrey Alekseenko, Dmitri Beglov, Dima Kozakov
2017 J jnl
ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.
Bioinform.
Kathryn A. Porter, Bing Xia, Dmitri Beglov, Tanggis Bohnuud, Nawsad Alam, Ora Schueler-Furman, Dima Kozakov
2014 J jnl
Docking Server for the Identification of Heparin Binding Sites on Proteins.
J. Chem. Inf. Model.
Scott E. Mottarella, Dmitri Beglov, Natalia Beglova, Matthew A. Nugent, Dima Kozakov, Sandor Vajda
2013 J jnl
FTFlex: accounting for binding site flexibility to improve fragment-based identification of druggable hot spots.
Bioinform.
Laurie E. Grove, David R. Hall, Dmitri Beglov, Sandor Vajda, Dima Kozakov
2013 — conf
Flexible refinement of protein-ligand docking on manifolds.
CDC
Hanieh Mirzaei, Elizabeth A. Villar, Scott E. Mottarella, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov, Pirooz Vakili
2012 — conf
A new approach to rigid body minimization with application to molecular docking.
CDC
Hanieh Mirzaei, Dima Kozakov, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Pirooz Vakili
2012 J jnl
Application of asymmetric statistical potentials to antibody-protein docking.
Bioinform.
Ryan Brenke, David R. Hall, Gwo-Yu Chuang, Stephen R. Comeau, Tanggis Bohnuud, Dmitri Beglov, Ora Schueler-Furman, Sandor Vajda, Dima Kozakov
2012 J jnl
FTMAP: extended protein mapping with user-selected probe molecules.
Nucleic Acids Res.
Chi-Ho Ngan, Tanggis Bohnuud, Scott E. Mottarella, Dmitri Beglov, Elizabeth A. Villar, David R. Hall, Dima Kozakov, Sandor Vajda
2009 J jnl
Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase.
J. Comput. Aided Mol. Des.
Melissa R. Landon, Raquel L. Lieberman, Quyen Q. Hoang, Shulin Ju, Jose M. M. Caaveiro, Susan D. Orwig, Dima Kozakov, Ryan Brenke, Gwo-Yu Chuang, Dmitri Beglov, Sandor Vajda, Gregory A. Petsko, Dagmar Ringe
2009 J jnl
Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques.
Bioinform.
Ryan Brenke, Dima Kozakov, Gwo-Yu Chuang, Dmitri Beglov, David R. Hall, Melissa R. Landon, Carla Mattos, Sandor Vajda