Diogo Pratas - RankMe

65 papers B 10Misc 13Journal 25Unranked 15

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	A Machine Learning Method for Authentication of Human Ancient Mitochondrial DNA. IbPRIA (2) Denis Yamunaque, Armando J. Pinho, Antti Sajantila, Diogo Pratas
2025	B	`conf`	AIDetx: A Compression-Based Method for Identification of Machine-Learning Generated Text. DCC Leonardo Almeida, Pedro Rodrigues, Diogo Magalhães, Armando J. Pinho, Diogo Pratas
2025	J	`jnl`	Decoding the Past: Explainable Machine Learning Models for Dating Historical Texts. CoRR Paulo J. N. Pinto, Armando J. Pinho, Diogo Pratas
2025	—	`conf`	ECOmpress: A Web Tool for Boosting Energy Efficiency Through Data Compression. IbPRIA (2) Dinis Lei, Denis Yamunaque, Armando J. Pinho, Diogo Pratas
2025	B	`conf`	Optimization of Data Compression Parameters Using Genetic Algorithms. DCC Armando J. Pinho, Diogo Pratas
2024	—	`conf`	A Sorting Tool for Improving FASTA Data Compression Tools. EUSIPCO Tiago Fonseca, Maria J. P. Sousa, Armando J. Pinho, Diogo Pratas
2024	J	`jnl`	AIDetx: a compression-based method for identification of machine-learning generated text. CoRR Leonardo Almeida, Pedro Rodrigues, Diogo Magalhães, Armando J. Pinho, Diogo Pratas
2024	B	`conf`	An experimental sorting method for improving metagenomic data encoding. DCC Diogo Pratas, Armando J. Pinho
2024	J	`jnl`	An experimental sorting method for improving metagenomic data encoding. CoRR Diogo Pratas, Armando J. Pinho
2024	—	`conf`	Asensitive Compression-Based Method for Filtering Targeted FASTQ Sequencing Reads. EUSIPCO Maria J. P. Sousa, Armando J. Pinho, Diogo Pratas
2024	B	`conf`	Copy models for protein sequence compression. DCC Armando J. Pinho, Diogo Pratas
2024	—	`conf`	Improving the Generation of Viral Consensus Sequences Using Adaptive Models. EUSIPCO Maria J. P. Sousa, Armando J. Pinho, Diogo Pratas
2024	J	`jnl`	JARVIS3: an efficient encoder for genomic data. Bioinform. Maria J. P. Sousa, Armando J. Pinho, Diogo Pratas
2024	J	`jnl`	Machine Learning-Driven Discovery and Database of Cyanobacteria Bioactive Compounds: A Resource for Therapeutics and Bioremediation. J. Chem. Inf. Model. Renato Soares, Luísa Azevedo, Vitor Vasconcelos, Diogo Pratas, Sergio F. Sousa, João Carneiro
2023	—	`conf`	Exploring Kolmogorov Complexity Approximations for Data Analysis: Insights and Applications. DoCEIS Jorge Miguel Silva, Diogo Pratas, Sérgio Matos
2023	B	`conf`	JARVIS2: a data compressor for large genome sequences. DCC Diogo Pratas, Armando J. Pinho
2023	J	`jnl`	TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa. J. Comput. Aided Mol. Des. João Carneiro, Rita P. Magalhães, Victor M. de la Oliva Roque, Manuel Simões, Diogo Pratas, Sergio F. Sousa
2022	Misc	`conf`	Feature-Based Classification of Archaeal Sequences Using Compression-Based Methods. IbPRIA Jorge Miguel Silva, Diogo Pratas, Tânia Caetano, Sérgio Matos
2021	J	`jnl`	A semi-automatic methodology for analysing distributed and private biobanks. Comput. Biol. Medicine João Rafael Almeida, Diogo Pratas, José Luís Oliveira
2021	J	`jnl`	AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models. Entropy Milton Silva, Diogo Pratas, Armando J. Pinho
2021	J	`jnl`	Automatic analysis of artistic paintings using information-based measures. CoRR Jorge Miguel Silva, Diogo Pratas, Rui Antunes, Sérgio Matos, Armando J. Pinho
2021	J	`jnl`	Automatic analysis of artistic paintings using information-based measures. Pattern Recognit. Jorge Miguel Silva, Diogo Pratas, Rui Antunes, Sérgio Matos, Armando J. Pinho
2021	J	`jnl`	Persistent minimal sequences of SARS-CoV-2. Bioinform. Diogo Pratas, Jorge Miguel Silva
2020	J	`jnl`	GTO: A toolkit to unify pipelines in genomic and proteomic research. SoftwareX João Rafael Almeida, Armando J. Pinho, José Luís Oliveira, Olga Fajarda, Diogo Pratas
2020	J	`jnl`	Statistical Complexity Analysis of Turing Machine tapes with Fixed Algorithmic Complexity Using the Best-Order Markov Model. Entropy Jorge Miguel Silva, Eduardo Pinho, Sérgio Matos, Diogo Pratas
2019	—	`conf`	A Probabilistic Method to Find and Visualize Distinct Regions in Protein Sequences. EUSIPCO Morteza Hosseini, Diogo Pratas, Armando J. Pinho
2019	J	`jnl`	A Reference-Free Lossless Compression Algorithm for DNA Sequences Using a Competitive Prediction of Two Classes of Weighted Models. Entropy Diogo Pratas, Seyed Morteza Hosseini, Jorge Miguel, Armando J. Pinho
2019	J	`jnl`	Cryfa: a secure encryption tool for genomic data. Bioinform. Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho
2019	Misc	`conf`	GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences. PACBB Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
2019	Misc	`conf`	Visualization of Similar Primer and Adapter Sequences in Assembled Archaeal Genomes. PACBB Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
2018	Misc	`conf`	A DNA Sequence Corpus for Compression Benchmark. PACBB Diogo Pratas, Armando J. Pinho
2018	B	`conf`	An Application of Data Compression Models to Handwritten Digit Classification. ACIVS Armando J. Pinho, Diogo Pratas
2018	J	`jnl`	Comparison of Compression-Based Measures with Application to the Evolution of Primate Genomes. Entropy Diogo Pratas, Raquel M. Silva, Armando J. Pinho
2018	Misc	`conf`	Compression of Amino Acid Sequences. PACBB Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
2018	J	`jnl`	Extended-alphabet finite-context models. Pattern Recognit. Lett. João M. Carvalho, Susana Brás, Diogo Pratas, Jacqueline Ferreira, Sandra C. Soares, Armando J. Pinho
2018	—	`conf`	Metagenomic composition analysis of sedimentary ancient DNA from the Isle of Wight. EUSIPCO Diogo Pratas, Armando J. Pinho
2018	Misc	`conf`	NET-ASAR: A Tool for DNA Sequence Search Based on Data Compression. PACBB Manuel Gaspar, Diogo Pratas, Armando J. Pinho
2017	—	`ed.`	Algorithms for Computational Biology - 4th International Conference, AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings AlCoB Daniel Figueiredo, Carlos Martín-Vide, Diogo Pratas, Miguel A. Vega-Rodríguez
2017	Misc	`conf`	Cryfa: A Tool to Compact and Encrypt FASTA Files. PACBB Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
2017	J	`jnl`	Extended-Alphabet Finite-Context Models. CoRR João M. Carvalho, Susana Brás, Diogo Pratas, Jacqueline Ferreira, Sandra C. Soares, Armando J. Pinho
2017	Misc	`conf`	On the Approximation of the Kolmogorov Complexity for DNA Sequences. IbPRIA Diogo Pratas, Armando J. Pinho
2017	Misc	`conf`	On the Role of Inverted Repeats in DNA Sequence Similarity. PACBB Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho
2017	Misc	`conf`	Substitutional Tolerant Markov Models for Relative Compression of DNA Sequences. PACBB Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho
2017	Misc	`conf`	Visualization of Distinct DNA Regions of the Modern Human Relatively to a Neanderthal Genome. IbPRIA Diogo Pratas, Seyed Morteza Hosseini, Raquel M. Silva, Armando J. Pinho, Paulo Jorge S. G. Ferreira
2016	J	`jnl`	A Survey on Data Compression Methods for Biological Sequences. Inf. Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho
2016	B	`conf`	Authorship Attribution Using Relative Compression. DCC Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira
2016	—	`—`	Compression and analysis of genomic data Diogo Pratas
2016	B	`conf`	Efficient Compression of Genomic Sequences. DCC Diogo Pratas, Armando J. Pinho, Paulo Jorge S. G. Ferreira
2015	J	`jnl`	Three minimal sequences found in Ebola virus genomes and absent from human DNA. Bioinform. Raquel M. Silva, Diogo Pratas, Luísa Castro, Armando J. Pinho, Paulo Jorge S. G. Ferreira
2014	B	`conf`	A Conditional Compression Distance that Unveils Insights of the Genomic Evolution. DCC Diogo Pratas, Armando J. Pinho
2014	—	`conf`	A New Compressor for Measuring Distances among Images. ICIAR (1) Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira
2014	J	`jnl`	A conditional compression distance that unveils insights of the genomic evolution. CoRR Diogo Pratas, Armando J. Pinho
2014	—	`conf`	Exploring deep Markov models in genomic data compression using sequence pre-analysis. EUSIPCO Diogo Pratas, Armando J. Pinho
2014	B	`conf`	Information Profiles for DNA Pattern Discovery. DCC Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira
2014	J	`jnl`	Information profiles for DNA pattern discovery. CoRR Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira
2014	J	`jnl`	MFCompress: a compression tool for FASTA and multi-FASTA data. Bioinform. Armando J. Pinho, Diogo Pratas
2013	J	`jnl`	A Compression Model for DNA Multiple Sequence Alignment Blocks. IEEE Trans. Inf. Theory Luís M. O. de Matos, Diogo Pratas, Armando J. Pinho
2013	J	`jnl`	A Genomic Distance for Assembly Comparison Based on Compressed Maximal Exact Matches. IEEE ACM Trans. Comput. Biol. Bioinform. Sara P. Garcia, João M. O. S. Rodrigues, Sérgio Santos, Diogo Pratas, Vera Afreixo, Carlos A. C. Bastos, Paulo Jorge S. G. Ferreira, Armando J. Pinho
2012	—	`conf`	Compression of Whole Genome Alignments Using a Mixture of Finite-Context Models. ICIAR (1) Luís M. O. de Matos, Diogo Pratas, Armando J. Pinho
2012	—	`conf`	Computation of the Normalized Compression Distance of DNA Sequences using a Mixture of Finite-context Models. BIOINFORMATICS Diogo Pratas, Armando J. Pinho, Sara P. Garcia
2012	Misc	`conf`	Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. PACBB Diogo Pratas, Armando J. Pinho, Sara P. Garcia
2012	—	`conf`	On the Detection of Unknown Locally Repeating Patterns in Images. ICIAR (1) Diogo Pratas, Armando J. Pinho
2011	—	`conf`	Complexity Profiles of DNA Sequences Using Finite-Context Models. USAB Armando J. Pinho, Diogo Pratas, Sara P. Garcia
2011	Misc	`conf`	Compressing the Human Genome Using Exclusively Markov Models. PACBB Diogo Pratas, Armando J. Pinho
2011	—	`conf`	Symbolic to numerical conversion of DNA sequences using finite-context models. EUSIPCO Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira, Sara P. Garcia