Dina Schneidman-Duhovny

19 papers B 1Journal 18
YearRankTypeTitle / Venue / Authors
2024 J jnl
ContactNet: Geometric-Based Deep Learning Model for Predicting Protein-Protein Interactions.
CoRR
Matan Halfon, Tomer Cohen, Raanan Fattal, Dina Schneidman-Duhovny
2024 J jnl
Discovering predisposing genes for hereditary breast cancer using deep learning.
Briefings Bioinform.
Gal Passi, Sari Lieberman, Fouad Zahdeh, Omer Murik, Paul Renbaum, Rachel Beeri, Michal Linial, Dalit May, Ephrat Levy-Lahad, Dina Schneidman-Duhovny
2024 J jnl
RhoMax: Computational Prediction of Rhodopsin Absorption Maxima Using Geometric Deep Learning.
J. Chem. Inf. Model.
Meitar Sela, Jonathan R. Church, Igor Schapiro, Dina Schneidman-Duhovny
2016 J jnl
FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles.
Nucleic Acids Res.
Dina Schneidman-Duhovny, Michal Hammel, John A. Tainer, Andrej Sali
2016 J jnl
Memdock: an α-helical membrane protein docking algorithm.
Bioinform.
Naama Hurwitz, Dina Schneidman-Duhovny, Haim J. Wolfson
2014 J jnl
ModBase, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
Ursula Pieper, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill, Patrick Weinkam, Michal Hammel, John A. Tainer, Michael Nilges, Andrej Sali
2013 J jnl
Optimized atomic statistical potentials: assessment of protein interfaces and loops.
Bioinform.
Guang Qiang Dong, Hao Fan, Dina Schneidman-Duhovny, Ben M. Webb, Andrej Sali
2012 J jnl
A method for integrative structure determination of protein-protein complexes.
Bioinform.
Dina Schneidman-Duhovny, Andrea Rossi, Agustin Avila-Sakar, Seung Joong Kim, Javier A. Velázquez-Muriel, Pavel Strop, Hong Liang, Kristin A. Krukenberg, Maofu Liao, Ho Min Kim, Solmaz Sobhanifar, Volker Dötsch, Arvind Rajpal, Jaume Pons, David A. Agard, Yifan Cheng, Andrej Sali
2011 J jnl
ModBase, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res.
Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali
2011 J jnl
Statistical Potential for Modeling and Ranking of Protein-Ligand Interactions.
J. Chem. Inf. Model.
Hao Fan, Dina Schneidman-Duhovny, John J. Irwin, Guang Qiang Dong, Brian K. Shoichet, Andrej Sali
2010 J jnl
FoXS: a web server for rapid computation and fitting of SAXS profiles.
Nucleic Acids Res.
Dina Schneidman-Duhovny, Michal Hammel, Andrej Sali
2009 J jnl
Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications.
J. Chem. Inf. Model.
Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2008 J jnl
Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules.
J. Comput. Biol.
Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2008 J jnl
FireDock: a web server for fast interaction refinement in molecular docking.
Nucleic Acids Res.
Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson
2008 J jnl
PharmaGist: a webserver for ligand-based pharmacophore detection.
Nucleic Acids Res.
Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2008 J jnl
Structural similarity of genetically interacting proteins.
BMC Syst. Biol.
Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan
2007 B conf
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules.
RECOMB
Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2005 J jnl
PatchDock and SymmDock: servers for rigid and symmetric docking.
Nucleic Acids Res.
Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2004 J jnl
BioInfo3D: a suite of tools for structural bioinformatics.
Nucleic Acids Res.
Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson