Dina Demner-Fushman

289 papers A* 4A 4B 11Misc 52Journal 89Unranked 108

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Dataset and Resources for Identifying Patient Health Literacy Information from Clinical Notes. CoRR Madeline Bittner, Dina Demner-Fushman, Yasmeen Shabazz, Davis Bartels, Dukyong Yoon, Brad Quitadamo, Rajiv Menghrajani, Leo Celi, Sarvesh Soni
2026	J	`jnl`	BioACE: An Automated Framework for Biomedical Answer and Citation Evaluations. CoRR Deepak Gupta, Davis Bartels, Dina Demner-Fushman
2026	J	`jnl`	Lessons from the TREC Plain Language Adaptation of Biomedical Abstracts (PLABA) track. J. Biomed. Informatics Brian D. Ondov, William Xia, Kush Attal, Ishita Unde, Jerry He, Dina Demner-Fushman
2026	J	`jnl`	Overview of TREC 2025 Biomedical Generative Retrieval (BioGen) Track. CoRR Deepak Gupta, Dina Demner-Fushman, William R. Hersh, Steven Bedrick, Kirk Roberts
2026	J	`jnl`	Quantifying Hallucinations in Language Language Models on Medical Textbooks. CoRR Brandon Colelough, Davis Bartels, Dina Demner-Fushman
2025	J	`jnl`	A Dataset and Benchmark for Consumer Healthcare Question Summarization. CoRR Abhishek Basu, Deepak Gupta, Dina Demner-Fushman, Shweta Yadav
2025	J	`jnl`	A Dataset for Addressing Patient's Information Needs related to Clinical Course of Hospitalization. CoRR Sarvesh Soni, Dina Demner-Fushman
2025	J	`jnl`	Automated Evaluation can Distinguish the Good and Bad AI Responses to Patient Questions about Hospitalization. CoRR Sarvesh Soni, Dina Demner-Fushman
2025	—	`conf`	Can Large Language Models Accurately Generate Answer Keys for Health-related Questions? ACL (2) Davis Bartels, Deepak Gupta, Dina Demner-Fushman
2025	—	`conf`	JEBS: A Fine-grained Biomedical Lexical Simplification Task. ACL (Findings) William Xia, Ishita Unde, Brian David Ondov, Dina Demner-Fushman
2025	J	`jnl`	JEBS: A Fine-grained Biomedical Lexical Simplification Task. CoRR William Xia, Ishita Unde, Brian D. Ondov, Dina Demner-Fushman
2025	J	`jnl`	Lessons from the TREC Plain Language Adaptation of Biomedical Abstracts (PLABA) track. CoRR Brian D. Ondov, William Xia, Kush Attal, Ishita Unde, Jerry He, Dina Demner-Fushman
2025	J	`jnl`	Overview of the ClinIQLink 2025 Shared Task on Medical Question-Answering. CoRR Brandon Colelough, Davis Bartels, Dina Demner-Fushman
2024	—	`conf`	Empowering Language Model with Guided Knowledge Fusion for Biomedical Document Re-ranking. AIME (1) Deepak Gupta, Dina Demner-Fushman
2024	J	`jnl`	On the role of the UMLS in supporting diagnosis generation proposed by Large Language Models. J. Biomed. Informatics Majid Afshar, Yanjun Gao, Deepak Gupta, Emma Croxford, Dina Demner-Fushman
2024	—	`conf`	Overview of TREC 2024 Biomedical Generative Retrieval (BioGen) Track. TREC Deepak Gupta, Dina Demner-Fushman, William R. Hersh, Steven Bedrick, Kirk Roberts
2024	J	`jnl`	Overview of TREC 2024 Biomedical Generative Retrieval (BioGen) Track. CoRR Deepak Gupta, Dina Demner-Fushman, William R. Hersh, Steven Bedrick, Kirk Roberts
2024	J	`jnl`	Overview of TREC 2024 Medical Video Question Answering (MedVidQA) Track. CoRR Deepak Gupta, Dina Demner-Fushman
2024	—	`conf`	Overview of TREC 2024 Medical video Question Answering (MedVidQA) Track. TREC Deepak Gupta, Dina Demner-Fushman
2024	—	`conf`	Pedagogically Aligned Objectives Create Reliable Automatic Cloze Tests. NAACL-HLT Brian D. Ondov, Kush Attal, Dina Demner-Fushman
2024	—	`ed.`	Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2024, Bangkok, Thailand, August 16, 2024 BioNLP@ACL Dina Demner-Fushman, Sophia Ananiadou, Makoto Miwa, Kirk Roberts, Junichi Tsujii
2024	—	`conf`	Sentence-Aligned Simplification of Biomedical Abstracts. AIME (1) Brian D. Ondov, Dina Demner-Fushman
2024	J	`jnl`	Toward Relieving Clinician Burden by Automatically Generating Progress Notes using Interim Hospital Data. CoRR Sarvesh Soni, Dina Demner-Fushman
2024	—	`conf`	Towards Answering Health-related Questions from Medical Videos: Datasets and Approaches. LREC/COLING Deepak Gupta, Kush Attal, Dina Demner-Fushman
2023	J	`jnl`	Empowering Language Model with Guided Knowledge Fusion for Biomedical Document Re-ranking. CoRR Deepak Gupta, Dina Demner-Fushman
2023	J	`jnl`	Medical image retrieval via nearest neighbor search on pre-trained image features. Knowl. Based Syst. Deepak Gupta, Russell F. Loane, Soumya Gayen, Dina Demner-Fushman
2023	—	`ed.`	The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023. BioNLP@ACL Dina Demner-Fushman, Sophia Ananiadou, Kevin Cohen
2023	J	`jnl`	The National Library of Medicine indexer assignment dataset: A new large-scale dataset for reviewer assignment research. J. Assoc. Inf. Sci. Technol. Alastair R. Rae, James G. Mork, Dina Demner-Fushman
2023	J	`jnl`	Towards Answering Health-related Questions from Medical Videos: Datasets and Approaches. CoRR Deepak Gupta, Kush Attal, Dina Demner-Fushman
2022	J	`jnl`	A Dataset for Medical Instructional Video Classification and Question Answering. CoRR Deepak Gupta, Kush Attal, Dina Demner-Fushman
2022	J	`jnl`	A Dataset for Plain Language Adaptation of Biomedical Abstracts. CoRR Kush Attal, Brian D. Ondov, Dina Demner-Fushman
2022	J	`jnl`	A survey of automated methods for biomedical text simplification. J. Am. Medical Informatics Assoc. Brian D. Ondov, Kush Attal, Dina Demner-Fushman
2022	J	`jnl`	CHQ-Summ: A Dataset for Consumer Healthcare Question Summarization. CoRR Shweta Yadav, Deepak Gupta, Dina Demner-Fushman
2022	J	`jnl`	Clinical Language Understanding Evaluation (CLUE). CoRR Travis R. Goodwin, Dina Demner-Fushman
2022	J	`jnl`	Medical Image Retrieval via Nearest Neighbor Search on Pre-trained Image Features. CoRR Deepak Gupta, Russell F. Loane, Soumya Gayen, Dina Demner-Fushman
2022	—	`conf`	Overview of the MedVidQA 2022 Shared Task on Medical Video Question-Answering. BioNLP@ACL Deepak Gupta, Dina Demner-Fushman
2022	—	`conf`	Overview of the TREC 2022 Clinical Trials Track. TREC Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, Steven Bedrick, William R. Hersh
2022	—	`ed.`	Proceedings of the 21st Workshop on Biomedical Language Processing, BioNLP@ACL 2022, Dublin, Ireland, May 26, 2022 BioNLP@ACL Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2022	J	`jnl`	Question-aware transformer models for consumer health question summarization. J. Biomed. Informatics Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman
2021	—	`conf`	A Neural Text Ranking Approach for Automatic MeSH Indexing. CLEF (Working Notes) Alastair R. Rae, James G. Mork, Dina Demner-Fushman
2021	—	`conf`	AI-NLM exploration of the Acronym Identification Shared Task at SDU@AAAI-21. SDU@AAAI Willie Rogers, Alastair R. Rae, Dina Demner-Fushman
2021	—	`conf`	Automatic recognition of figurative language in biomedical articles. SDU@AAAI Dina Demner-Fushman, Willie J. Rogers, James G. Mork
2021	—	`conf`	Evidence-based Fact-Checking of Health-related Claims. EMNLP (Findings) Mourad Sarrouti, Asma Ben Abacha, Yassine Mrabet, Dina Demner-Fushman
2021	J	`jnl`	Goal-Driven Visual Question Generation from Radiology Images. Inf. Mourad Sarrouti, Asma Ben Abacha, Dina Demner-Fushman
2021	—	`conf`	Multi-Task Transfer Learning with Data Augmentation for Recognizing Question Entailment in the Medical Domain. ICHI Mourad Sarrouti, Asma Ben Abacha, Dina Demner-Fushman
2021	—	`conf`	NLM at BioASQ Synergy 2021: Deep Learning-based Methods for Biomedical Semantic Question Answering about COVID-19. CLEF (Working Notes) Mourad Sarrouti, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman
2021	—	`conf`	Overview of the ImageCLEF 2021: Multimedia Retrieval in Medical, Nature, Internet and Social Media Applications. CLEF Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Mourad Sarrouti, Dina Demner-Fushman, Sadid A. Hasan, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Vassili Kovalev, Obioma Pelka, Alba García Seco de Herrera, Janadhip Jacutprakart, Christoph M. Friedrich, Raul Berari, Andrei Tauteanu, Dimitri Fichou, Paul Brie, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin, Jon Chamberlain, Antonio Campello, Adrian F. Clark, Thomas Oliver, Hassan Moustahfid, Adrian Popescu, Jerome Deshayes-Chossart
2021	—	`conf`	Overview of the MEDIQA 2021 Shared Task on Summarization in the Medical Domain. BioNLP@NAACL-HLT Asma Ben Abacha, Yassine Mrabet, Yuhao Zhang, Chaitanya Shivade, Curtis P. Langlotz, Dina Demner-Fushman
2021	—	`conf`	Overview of the VQA-Med Task at ImageCLEF 2021: Visual Question Answering and Generation in the Medical Domain. CLEF (Working Notes) Asma Ben Abacha, Mourad Sarrouti, Dina Demner-Fushman, Sadid A. Hasan, Henning Müller
2021	—	`ed.`	Proceedings of the 20th Workshop on Biomedical Language Processing, BioNLP@NAACL-HLT 2021, Online, June 11, 2021 BioNLP@NAACL-HLT Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2021	J	`jnl`	Question-aware Transformer Models for Consumer Health Question Summarization. CoRR Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman
2021	—	`conf`	Reinforcement Learning for Abstractive Question Summarization with Question-aware Semantic Rewards. ACL/IJCNLP (2) Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman
2021	J	`jnl`	Reinforcement Learning for Abstractive Question Summarization with Question-aware Semantic Rewards. CoRR Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman
2021	Misc	`conf`	Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. AMIA Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman
2021	J	`jnl`	Searching for Scientific Evidence in a Pandemic: An Overview of TREC-COVID. CoRR Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh
2021	J	`jnl`	Searching for scientific evidence in a pandemic: An overview of TREC-COVID. J. Biomed. Informatics Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh
2021	—	`conf`	The 2021 ImageCLEF Benchmark: Multimedia Retrieval in Medical, Nature, Internet and Social Media Applications. ECIR (2) Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Dina Demner-Fushman, Sadid A. Hasan, Mourad Sarrouti, Obioma Pelka, Christoph M. Friedrich, Alba Garcia Seco de Herrera, Janadhip Jacutprakart, Vassili Kovalev, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Hassan Moustahfid, Thomas Oliver, Abigail Schulz, Paul Brie, Raul Berari, Dimitri Fichou, Andrei Tauteanu, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin, Jérôme Deshayes, Adrian Popescu
2020	J	`jnl`	A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision. J. Am. Medical Informatics Assoc. Travis R. Goodwin, Dina Demner-Fushman
2020	Misc	`conf`	Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem. AMIA Alastair R. Rae, David O. Pritchard, James G. Mork, Dina Demner-Fushman
2020	J	`jnl`	Consumer health information and question answering: helping consumers find answers to their health-related information needs. J. Am. Medical Informatics Assoc. Dina Demner-Fushman, Yassine Mrabet, Asma Ben Abacha
2020	B	`conf`	Flight of the PEGASUS? Comparing Transformers on Few-shot and Zero-shot Multi-document Abstractive Summarization. COLING Travis R. Goodwin, Max E. Savery, Dina Demner-Fushman
2020	B	`conf`	HOLMS: Alternative Summary Evaluation with Large Language Models. COLING Yassine Mrabet, Dina Demner-Fushman
2020	—	`conf`	ImageCLEF 2020: Multimedia Retrieval in Lifelogging, Medical, Nature, and Internet Applications. ECIR (2) Bogdan Ionescu, Henning Müller, Renaud Péteri, Duc-Tien Dang-Nguyen, Liting Zhou, Luca Piras, Michael Riegler, Pål Halvorsen, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Alba Garcia Seco de Herrera, Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Joey Liu, Dina Demner-Fushman, Obioma Pelka, Christoph M. Friedrich, Yashin Dicente Cid, Serge Kozlovski, Vitali Liauchuk, Vassili Kovalev, Raul Berari, Paul Brie, Dimitri Fichou, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin
2020	—	`conf`	NLM at TREC 2020 Health Misinformation and Deep Learning Tracks. TREC Yassine Mrabet, Mourad Sarrouti, Asma Ben Abacha, Soumya Gayen, Travis R. Goodwin, Alastair R. Rae, Willie Rogers, Dina Demner-Fushman
2020	—	`conf`	Overview of the ImageCLEF 2020: Multimedia Retrieval in Medical, Lifelogging, Nature, and Internet Applications. CLEF Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Dina Demner-Fushman, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Vassili Kovalev, Obioma Pelka, Christoph M. Friedrich, Alba García Seco de Herrera, Van-Tu Ninh, Tu-Khiem Le, Liting Zhou, Luca Piras, Michael Riegler, Pål Halvorsen, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Duc-Tien Dang-Nguyen, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Dimitri Fichou, Raul Berari, Paul Brie, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin
2020	—	`conf`	Overview of the TREC 2020 Precision Medicine Track. TREC Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, Steven Bedrick, William R. Hersh
2020	—	`conf`	Overview of the VQA-Med Task at ImageCLEF 2020: Visual Question Answering and Generation in the Medical Domain. CLEF (Working Notes) Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Dina Demner-Fushman, Henning Müller
2020	—	`ed.`	Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, BioNLP 2020, Online, July 9, 2020 BioNLP Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2020	J	`jnl`	Question-Driven Summarization of Answers to Consumer Health Questions. CoRR Max E. Savery, Asma Ben Abacha, Soumya Gayen, Dina Demner-Fushman
2020	J	`jnl`	TREC-COVID: Constructing a Pandemic Information Retrieval Test Collection. CoRR Ellen M. Voorhees, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, William R. Hersh, Kyle Lo, Kirk Roberts, Ian Soboroff, Lucy Lu Wang
2020	J	`jnl`	TREC-COVID: constructing a pandemic information retrieval test collection. SIGIR Forum Ellen M. Voorhees, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, William R. Hersh, Kyle Lo, Kirk Roberts, Ian Soboroff, Lucy Lu Wang
2020	J	`jnl`	TREC-COVID: rationale and structure of an information retrieval shared task for COVID-19. J. Am. Medical Informatics Assoc. Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh
2020	—	`conf`	Towards Zero Shot Conditional Summarization with Adaptive Multi-task Fine-Tuning. EMNLP (Findings) Travis R. Goodwin, Max E. Savery, Dina Demner-Fushman
2020	J	`jnl`	Understanding spatial language in radiology: Representation framework, annotation, and spatial relation extraction from chest X-ray reports using deep learning. J. Biomed. Informatics Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts
2019	Misc	`conf`	A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA Alastair R. Rae, Max E. Savery, James G. Mork, Dina Demner-Fushman
2019	J	`jnl`	A Question-Entailment Approach to Question Answering. CoRR Asma Ben Abacha, Dina Demner-Fushman
2019	J	`jnl`	A question-entailment approach to question answering. BMC Bioinform. Asma Ben Abacha, Dina Demner-Fushman
2019	—	`conf`	Bridging the Gap Between Consumers' Medication Questions and Trusted Answers. MedInfo Asma Ben Abacha, Yassine Mrabet, Mark Sharp, Travis R. Goodwin, Sonya E. Shooshan, Dina Demner-Fushman
2019	J	`jnl`	Bridging the Knowledge Gap: Enhancing Question Answering with World and Domain Knowledge. CoRR Travis R. Goodwin, Dina Demner-Fushman
2019	Misc	`conf`	Classification Types: A New Feature in the SPECIALIST Lexicon. AMIA Chris J. Lu, Amanda Payne, Dina Demner-Fushman
2019	—	`conf`	Convolutional Neural Network for Automatic MeSH Indexing. PKDD/ECML Workshops (2) Alastair R. Rae, James G. Mork, Dina Demner-Fushman
2019	Misc	`conf`	Deep Learning from Incomplete Data: Detecting Imminent Risk of Hospital-acquired Pneumonia in ICU Patients. AMIA Travis R. Goodwin, Dina Demner-Fushman
2019	Misc	`conf`	Drug-drug Interaction Extraction via Transfer Learning. AMIA Yuqing Mao, Kin Wah Fung, Dina Demner-Fushman
2019	Misc	`conf`	Evaluation of System for Selective Indexing Classification. AMIA Max E. Savery, Melanie Huston, James G. Mork, Olga Printseva, Susan Schmidt, Alastair R. Rae, Dina Demner-Fushman
2019	—	`conf`	ImageCLEF 2019: Multimedia Retrieval in Lifelogging, Medical, Nature, and Security Applications. ECIR (2) Bogdan Ionescu, Henning Müller, Renaud Péteri, Duc-Tien Dang-Nguyen, Luca Piras, Michael Riegler, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Yashin Dicente Cid, Vitali Liauchuk, Vassili Kovalev, Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Obioma Pelka, Christoph M. Friedrich, Jon Chamberlain, Adrian F. Clark, Alba Garcia Seco de Herrera, Narciso García, Ergina Kavallieratou, Carlos Roberto del-Blanco, Carlos Cuevas, Nikos Vasilopoulos, Konstantinos Karampidis
2019	—	`conf`	ImageCLEF 2019: Multimedia Retrieval in Medicine, Lifelogging, Security and Nature. CLEF Bogdan Ionescu, Henning Müller, Renaud Péteri, Yashin Dicente Cid, Vitali Liauchuk, Vassili Kovalev, Dzmitri Klimuk, Aleh Tarasau, Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Duc-Tien Dang-Nguyen, Luca Piras, Michael Riegler, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Obioma Pelka, Christoph M. Friedrich, Alba Garcia Seco de Herrera, Narciso García, Ergina Kavallieratou, Carlos Roberto del-Blanco, Carlos Cuevas, Nikos Vasilopoulos, Konstantinos Karampidis, Jon Chamberlain, Adrian F. Clark, Antonio Campello
2019	—	`conf`	On Agreements in Visual Understanding. ViGIL@NeurIPS Yassine Mrabet, Dina Demner-Fushman
2019	—	`conf`	On the Summarization of Consumer Health Questions. ACL (1) Asma Ben Abacha, Dina Demner-Fushman
2019	—	`conf`	Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. BioNLP@ACL Asma Ben Abacha, Chaitanya Shivade, Dina Demner-Fushman
2019	—	`conf`	Overview of the TAC 2019 Track on Drug-Drug Interaction Extraction from Drug Labels. TAC Travis R. Goodwin, Dina Demner-Fushman, Kin Wah Fung, Phong Do
2019	—	`conf`	Overview of the TREC 2019 Precision Medicine Track. TREC Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant, Funda Meric-Bernstam
2019	—	`ed.`	Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL 2019, Florence, Italy, August 1, 2019. BioNLP@ACL Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2019	J	`jnl`	Spell checker for consumer language (CSpell). J. Am. Medical Informatics Assoc. Chris J. Lu, Alan R. Aronson, Sonya E. Shooshan, Dina Demner-Fushman
2019	J	`jnl`	Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning. CoRR Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts
2019	—	`conf`	VQA-Med: Overview of the Medical Visual Question Answering Task at ImageCLEF 2019. CLEF (Working Notes) Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Henning Müller
2018	Misc	`conf`	Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC). AMIA Dina Demner-Fushman, Joseph M. Tonning, Kin Wah Fung, Phong Do, Richard D. Boyce, Kirk Roberts
2018	Misc	`conf`	Benchmarking Information Retrieval for Precision Oncology: the TREC Precision Medicine Track. AMIA Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant
2018	—	`conf`	Clinical, Consumer Health, and Visual Question Answering. SIMBig Dina Demner-Fushman
2018	Misc	`conf`	Finding medication doses in the literature. AMIA Dina Demner-Fushman, James G. Mork, Willie J. Rogers, Sonya E. Shooshan, Laritza M. Rodriguez, Alan R. Aronson
2018	Misc	`conf`	Improving Spelling Correction with Consumer Health Terminology. AMIA Chris J. Lu, Dina Demner-Fushman
2018	Misc	`conf`	Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms. AMIA François-Michel Lang, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
2018	—	`conf`	NLM at ImageCLEF 2018 Visual Question Answering in the Medical Domain. CLEF (Working Notes) Asma Ben Abacha, Soumya Gayen, Jason J. Lau, Sivaramakrishnan Rajaraman, Dina Demner-Fushman
2018	—	`conf`	Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. TAC Dina Demner-Fushman, Kin Wah Fung, Phong Do, Richard D. Boyce, Travis R. Goodwin
2018	—	`conf`	Overview of the TREC 2018 Precision Medicine Track. TREC Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar
2018	—	`ed.`	Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018 BioNLP Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii
2018	J	`jnl`	Semantic annotation of consumer health questions. BMC Bioinform. Halil Kilicoglu, Asma Ben Abacha, Yassine Mrabet, Sonya E. Shooshan, Laritza Rodriguez, Kate Masterton, Dina Demner-Fushman
2017	J	`jnl`	12 years on - Is the NLM medical text indexer still useful and relevant? J. Biomed. Semant. James G. Mork, Alan R. Aronson, Dina Demner-Fushman
2017	J	`jnl`	A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources. J. Assoc. Inf. Sci. Technol. Ariel Deardorff, Kate Masterton, Kirk Roberts, Halil Kilicoglu, Dina Demner-Fushman
2017	J	`jnl`	A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation Trevor Cohen, Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, George Alter, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu
2017	J	`jnl`	Automated classification of eligibility criteria in clinical trials to facilitate patient-trial matching for specific patient populations. J. Am. Medical Informatics Assoc. Kevin Zhang, Dina Demner-Fushman
2017	—	`ed.`	BioNLP 2017, Vancouver, Canada, August 4, 2017 BioNLP Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Junichi Tsujii
2017	Misc	`conf`	CTB: A Custom Taxonomy Builder for Named Entity Extraction. AMIA Dina Demner-Fushman, Willie J. Rogers
2017	Misc	`conf`	Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval. AMIA Tracy Edinger, Dina Demner-Fushman, Aaron M. Cohen, Steven Bedrick, William R. Hersh
2017	Misc	`conf`	Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. AMIA Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, Trevor Cohen, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu
2017	J	`jnl`	Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Trevor Cohen, Hua Xu
2017	J	`jnl`	MetaMap Lite: an evaluation of a new Java implementation of MetaMap. J. Am. Medical Informatics Assoc. Dina Demner-Fushman, Willie J. Rogers, Alan R. Aronson
2017	Misc	`conf`	Mining the literature for genes associated with placenta-mediated maternal diseases. AMIA Laritza M. Rodriguez, Stephanie M. Morrison, Kathleen Greenberg, Dina Demner-Fushman
2017	—	`conf`	NLM at ImageCLEF 2017 Caption Task. CLEF (Working Notes) Asma Ben Abacha, Alba Garcia Seco de Herrera, Soumya Gayen, Dina Demner-Fushman, Sameer K. Antani
2017	—	`conf`	NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. SemEval@ACL Asma Ben Abacha, Dina Demner-Fushman
2017	—	`conf`	Named entity recognition in functional neuroimaging literature. BIBM Asma Ben Abacha, Alba Garcia Seco de Herrera, Ke Wang, L. Rodney Long, Sameer K. Antani, Dina Demner-Fushman
2017	Misc	`conf`	New MetaMap Features for Processing Numerical Tables. AMIA François-Michel Lang, Dina Demner-Fushman
2017	—	`conf`	Overview of the Medical Question Answering Task at TREC 2017 LiveQA. TREC Asma Ben Abacha, Eugene Agichtein, Yuval Pinter, Dina Demner-Fushman
2017	—	`conf`	Overview of the TAC 2017 Adverse Reaction Extraction from Drug Labels Track. TAC Kirk Roberts, Dina Demner-Fushman, Joseph M. Tonning
2017	—	`conf`	Overview of the TREC 2017 Precision Medicine Track. TREC Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant
2017	—	`conf`	TextFlow: A Text Similarity Measure based on Continuous Sequences. ACL (1) Yassine Mrabet, Halil Kilicoglu, Dina Demner-Fushman
2016	B	`conf`	A Hybrid Approach to Generation of Missing Abstracts in Biomedical Literature. COLING Suchet K. Chachra, Asma Ben Abacha, Sonya E. Shooshan, Laritza Rodriguez, Dina Demner-Fushman
2016	—	`conf`	Aligning Texts and Knowledge Bases with Semantic Sentence Simplification. WebNLG Yassine Mrabet, Pavlos Vougiouklis, Halil Kilicoglu, Claire Gardent, Dina Demner-Fushman, Jonathon S. Hare, Elena Simperl
2016	B	`conf`	Annotating Logical Forms for EHR Questions. LREC Kirk Roberts, Dina Demner-Fushman
2016	B	`conf`	Annotating Named Entities in Consumer Health Questions. LREC Halil Kilicoglu, Asma Ben Abacha, Yassine Mrabet, Kirk Roberts, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman
2016	Misc	`conf`	Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions. AMIA Yassine Mrabet, Halil Kilicoglu, Kirk Roberts, Dina Demner-Fushman
2016	J	`jnl`	Interactive use of online health resources: a comparison of consumer and professional questions. J. Am. Medical Informatics Assoc. Kirk Roberts, Dina Demner-Fushman
2016	A*	`conf`	Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation. CVPR Hoo-Chang Shin, Kirk Roberts, Le Lu, Dina Demner-Fushman, Jianhua Yao, Ronald M. Summers
2016	J	`jnl`	Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation. CoRR Hoo-Chang Shin, Kirk Roberts, Le Lu, Dina Demner-Fushman, Jianhua Yao, Ronald M. Summers
2016	J	`jnl`	Meta-Learning with Selective Data Augmentation for Medical Entity Recognition. Int. J. Comput. Linguistics Appl. Asma Ben Abacha, Dina Demner-Fushman
2016	B	`conf`	Modality Classification for Searching Figures in Biomedical Literature. CBMS Zhiyun Xue, Md. Mahmudur Rahman, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma
2016	Misc	`conf`	Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. AMIA Stéphane M. Meystre, Hongfang Liu, Rong Xu, Sivaram Arabandi, Kavishwar B. Wagholikar, Jon D. Patrick, Guergana K. Savova, Chunhua Weng, Pierre Zweigenbaum, Dina Demner-Fushman, Özlem Uzuner, Hua Xu
2016	—	`conf`	Overview of the TREC 2016 Clinical Decision Support Track. TREC Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh
2016	J	`jnl`	Preparing a collection of radiology examinations for distribution and retrieval. J. Am. Medical Informatics Assoc. Dina Demner-Fushman, Marc D. Kohli, Marc B. Rosenman, Sonya E. Shooshan, Laritza Rodriguez, Sameer K. Antani, George R. Thoma, Clement J. McDonald
2016	—	`ed.`	Proceedings of the 15th Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2016, Berlin, Germany, August 12, 2016 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2016	—	`ed.`	Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, BioTxtM@COLING 2016, Osaka, Japan, December 12, 2016 BioTxtM@COLING 2016 Sophia Ananiadou, Riza Batista-Navarro, Kevin Bretonnel Cohen, Dina Demner-Fushman, Paul Thompson
2016	Misc	`conf`	Recognizing Question Entailment for Medical Question Answering. AMIA Asma Ben Abacha, Dina Demner-Fushman
2016	Misc	`conf`	Resolving Hierarchical Ambiguity in Indexing Recommendations. AMIA James G. Mork, Dina Demner-Fushman
2016	Misc	`conf`	Resource Classification for Medical Questions. AMIA Kirk Roberts, Laritza M. Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman
2016	J	`jnl`	State-of-the-art in biomedical literature retrieval for clinical cases: a survey of the TREC 2014 CDS track. Inf. Retr. J. Kirk Roberts, Matthew S. Simpson, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh
2016	Misc	`conf`	Towards automatic discovery of Genes related to Human Placenta. AMIA Laritza M. Rodriguez, Stephanie M. Morrison, Kathleen Greenberg, Dina Demner-Fushman
2016	A	`conf`	Unsupervised Ranking of Knowledge Bases for Named Entity Recognition. ECAI Yassine Mrabet, Halil Kilicoglu, Dina Demner-Fushman
2015	J	`jnl`	A decade of community-wide efforts in advancing medical image understanding and retrieval. Comput. Medical Imaging Graph. Dina Demner-Fushman, Sameer K. Antani, Jayashree Kalpathy-Cramer, Henning Müller
2015	Misc	`conf`	An Ensemble Method for Spelling Correction in Consumer Health Questions. AMIA Halil Kilicoglu, Marcelo Fiszman, Kirk Roberts, Dina Demner-Fushman
2015	—	`conf`	Annotation of Chest Radiology Reports for Indexing and Retrieval. MRDM@ECIR Dina Demner-Fushman, Sonya E. Shooshan, Laritza Rodriguez, Sameer K. Antani, George R. Thoma
2015	Misc	`conf`	Automated searches for personalized evidence to prevent hospital acquired infection. AMIA Amos Cahan, Sonya E. Shooshan, Laritza Rodriguez, Dina Demner-Fushman
2015	Misc	`conf`	Automatic Classification of Structured Product Labels for Pregnancy Risk Drug Categories, a Machine Learning Approach. AMIA Laritza Rodriguez, Dina Demner-Fushman
2015	Misc	`conf`	Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language. AMIA Kirk Roberts, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman
2015	J	`jnl`	Evaluating performance of biomedical image retrieval systems - An overview of the medical image retrieval task at ImageCLEF 2004-2013. Comput. Medical Imaging Graph. Jayashree Kalpathy-Cramer, Alba Garcia Seco de Herrera, Dina Demner-Fushman, Sameer K. Antani, Steven Bedrick, Henning Müller
2015	Misc	`conf`	Extracting Characteristics of the Study Subjects from Full-Text Articles. AMIA Dina Demner-Fushman, James G. Mork
2015	—	`conf`	Foreign object detection in chest X-rays. BIBM Zhiyun Xue, Sema Candemir, Sameer K. Antani, L. Rodney Long, Stefan Jaeger, Dina Demner-Fushman, George R. Thoma
2015	J	`jnl`	Literature-based biomedical image classification and retrieval. Comput. Medical Imaging Graph. Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Zhiyun Xue, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma
2015	—	`ed.`	Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015 BioNLP@IJCNLP Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2015	J	`jnl`	The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs. J. Biomed. Informatics Kirk Roberts, Sonya E. Shooshan, Laritza Rodriguez, Swapna Abhyankar, Halil Kilicoglu, Dina Demner-Fushman
2014	—	`conf`	A contour-based shape descriptor for biomedical image classification and retrieval. DRR Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2014	Misc	`conf`	Addressing some statistical challenges of using EHR data for clinical research. AMIA Fiona M. Callaghan, Dina Demner-Fushman, Swapna Abhyankar, Matthew T. Jackson, Mallika Mundkur, Clement J. McDonald
2014	B	`conf`	An MRF Model for Biomedical Image Segmentation. CBMS Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2014	B	`conf`	Annotating Question Decomposition on Complex Medical Questions. LREC Kirk Roberts, Kate Masterton, Marcelo Fiszman, Halil Kilicoglu, Dina Demner-Fushman
2014	Misc	`conf`	Automatically Classifying Question Types for Consumer Health Questions. AMIA Kirk Roberts, Halil Kilicoglu, Marcelo Fiszman, Dina Demner-Fushman
2014	—	`conf`	Biomedical image segmentation for semantic visual feature extraction. BIBM Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2014	B	`conf`	Body Segment Classification for Visible Human Cross Section Slices. CBMS Zhiyun Xue, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma
2014	—	`conf`	Coreference Resolution for Structured Drug Product Labels. BioNLP@ACL Halil Kilicoglu, Dina Demner-Fushman
2014	—	`conf`	Decomposing Consumer Health Questions. BioNLP@ACL Kirk Roberts, Halil Kilicoglu, Marcelo Fiszman, Dina Demner-Fushman
2014	B	`conf`	Does Figure-Text Improve Biomedical Article Retrieval? A Pilot Study. CBMS Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2014	Misc	`conf`	Error Propagation in EHRs via Copy/Paste: An Analysis of Relative Dates. AMIA Kirk Roberts, Amos Cahan, Dina Demner-Fushman
2014	—	`conf`	Extraction and labeling high-resolution images from PDF documents. DRR Suchet K. Chachra, Zhiyun Xue, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2014	Misc	`conf`	Facilitating Reconciliation of Inter-Annotator Disagreements. AMIA Johann Stan, Olivier Bodenreider, Kin Wah Fung, Dina Demner-Fushman
2014	A	`conf`	Integrating visual words as bunch of n-grams for effective biomedical image classification. WACV Glauco Vitor Pedrosa, Md. Mahmudur Rahman, Sameer K. Antani, Dina Demner-Fushman, L. Rodney Long, Agma J. M. Traina
2014	J	`jnl`	Interactive cross and multimodal biomedical image retrieval based on automatic region-of-interest (ROI) identification and classification. Int. J. Multim. Inf. Retr. Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2014	J	`jnl`	Multimodal biomedical image indexing and retrieval using descriptive text and global feature mapping. Inf. Retr. Matthew S. Simpson, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma
2014	—	`ed.`	Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014, June 27-28, 2014 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2014	—	`conf`	Recent Enhancements to the NLM Medical Text Indexer. CLEF (Working Notes) James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson
2014	J	`jnl`	Research and applications: Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis. J. Am. Medical Informatics Assoc. Swapna Abhyankar, Dina Demner-Fushman, Fiona M. Callaghan, Clement J. McDonald
2014	Misc	`conf`	Vocabulary Density Method for Customized Indexing of MEDLINE Journals. AMIA James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson
2013	—	`conf`	A robust pointer segmentation in biomedical images toward building a visual ontology for biomedical article retrieval. DRR Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2013	Misc	`conf`	A simple method to extract key maternal data from neonatal clinical notes. AMIA Swapna Abhyankar, Dina Demner-Fushman
2013	—	`conf`	Annotating image ROIs with text descriptions for multimodal biomedical document retrieval. DRR Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2013	—	`conf`	Classification of CT Figures in Biomedical Articles Based on Body Segments. ICHI Zhiyun Xue, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma
2013	Misc	`conf`	Comparison and combination of several MeSH indexing approaches. AMIA Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
2013	—	`conf`	Continual Development of a Personalized Decision Support System. MedInfo Dina Demner-Fushman, Charlotte A. Seckman, Cheryl Fisher, George R. Thoma
2013	J	`jnl`	Extracting drug indication information from structured product labels using natural language processing. J. Am. Medical Informatics Assoc. Kin Wah Fung, Chiang S. Jao, Dina Demner-Fushman
2013	—	`conf`	ITI's Participation in the 2013 Medical Track of ImageCLEF. CLEF (Working Notes) Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma
2013	J	`jnl`	Image retrieval from scientific publications: Text and image content processing to separate multipanel figures. J. Assoc. Inf. Sci. Technol. Emilia Apostolova, Daekeun You, Zhiyun Xue, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2013	—	`conf`	Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis. BioNLP@ACL Halil Kilicoglu, Marcelo Fiszman, Dina Demner-Fushman
2013	Misc	`conf`	Mining MEDLINE for problems associated with vitamin D. AMIA Dina Demner-Fushman, James G. Mork, Alan R. Aronson
2013	J	`jnl`	Multimodal biomedical image retrieval using hierarchical classification and modality fusion. Int. J. Multim. Inf. Retr. Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2013	—	`conf`	Overview of the ImageCLEF 2013 Medical Tasks. CLEF (Working Notes) Alba Garcia Seco de Herrera, Jayashree Kalpathy-Cramer, Dina Demner-Fushman, Sameer K. Antani, Henning Müller
2013	—	`ed.`	Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2013, Sofia, Bulgaria, August 8, 2013 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Junichi Tsujii
2012	J	`jnl`	A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. J. Comput. Sci. Eng. Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
2012	J	`jnl`	A mutation-centric approach to identifying pharmacogenomic relations in text. J. Biomed. Informatics Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider
2012	—	`conf`	An Interactive Image Retrieval Framework for Biomedical Articles Based on Visual Region-of- Interest (ROI) Identification and Classification. HISB Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2012	—	`ch.`	Biomedical Text Mining: A Survey of Recent Progress. Mining Text Data Matthew S. Simpson, Dina Demner-Fushman
2012	J	`jnl`	Design and Development of a Multimodal Biomedical Information Retrieval System. J. Comput. Sci. Eng. Dina Demner-Fushman, Sameer K. Antani, Matthew S. Simpson, George R. Thoma
2012	—	`conf`	Domain Adaptation of Coreference Resolution for Radiology Reports. BioNLP@HLT-NAACL Emilia Apostolova, Noriko Tomuro, Pattanasak Mongkolwat, Dina Demner-Fushman
2012	—	`conf`	ITI's Participation in the ImageCLEF 2012 Medical Retrieval and Classification Tasks. CLEF (Online Working Notes/Labs/Workshop) Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma
2012	—	`conf`	MEDLINE MeSH indexing: lessons learned from machine learning and future directions. IHI Antonio Jimeno-Yepes, James G. Mork, Bartlomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson
2012	—	`conf`	NLM at TREC 2012 Medical Records Track. TREC Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, François-Michel Lang, James G. Mork, Nicolas Ide, Alan R. Aronson
2012	—	`conf`	Overview of the ImageCLEF 2012 Medical Image Retrieval and Classification Tasks. CLEF (Online Working Notes/Labs/Workshop) Henning Müller, Alba Garcia Seco de Herrera, Jayashree Kalpathy-Cramer, Dina Demner-Fushman, Sameer K. Antani, Ivan Eggel
2012	—	`ed.`	Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012 BioNLP@HLT-NAACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Bonnie L. Webber, Jun'ichi Tsujii, John Pestian
2012	Misc	`conf`	Research Designs in Mesh and Emtree: A Comparative Study of Coverage. AMIA Tanja Bekhuis, Dina Demner-Fushman, Rebecca S. Crowley
2012	J	`jnl`	Screening nonrandomized studies for medical systematic reviews: A comparative study of classifiers. Artif. Intell. Medicine Tanja Bekhuis, Dina Demner-Fushman
2012	J	`jnl`	Standardizing clinical laboratory data for secondary use. J. Biomed. Informatics Swapna Abhyankar, Dina Demner-Fushman, Clement J. McDonald
2012	—	`conf`	Syntactic-Semantic Frames for Clinical Cohort Identification Queries. DILS Dina Demner-Fushman, Swapna Abhyankar
2012	Misc	`conf`	Towards the Creation of a Visual Ontology of Biomedical Imaging Entities. AMIA Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Sameer K. Antani, George R. Thoma, Dina Demner-Fushman
2012	Misc	`conf`	Window Classification of Brain CT Images in Biomedical Articles. AMIA Zhiyun Xue, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma
2011	—	`conf`	A Knowledge-Based Approach to Medical Records Retrieval. TREC Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, Bastien Rance, François-Michel Lang, Nicholas C. Ide, Emilia Apostolova, Alan R. Aronson
2011	J	`jnl`	An image feature-based approach to automatically find images for application to clinical decision support. Comput. Medical Imaging Graph. Ronald Joe Stanley, Soumya De, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma
2011	—	`conf`	Automatic Extraction of Lexico-Syntactic Patterns for Detection of Negation and Speculation Scopes. ACL (2) Emilia Apostolova, Noriko Tomuro, Dina Demner-Fushman
2011	—	`conf`	Automatic identification of ROI in figure images toward improving hybrid (text and image) biomedical document retrieval. DRR Daekeun You, Sameer K. Antani, Dina Demner-Fushman, Md. Mahmudur Rahman, Venu Govindaraju, George R. Thoma
2011	—	`conf`	Biomedical Image Retrieval Using Multimodal Context and Concept Feature Spaces. MCBR-CDS Md. Mahmudur Rahman, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2011	A	`conf`	Detecting Figure-Panel Labels in Medical Journal Articles Using MRF. ICDAR Daekeun You, Sameer K. Antani, Dina Demner-Fushman, Venu Govindaraju, George R. Thoma
2011	—	`ed.`	Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011 BioNLP@ACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2011	—	`conf`	Text and Content-based Approaches to Image Modality Classification and Retrieval for the ImageCLEF 2011 Medical Retrieval Track. CLEF (Notebook Papers/Labs/Workshop) Matthew S. Simpson, Md. Mahmudur Rahman, Srinivas Phadnis, Emilia Apostolova, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma
2010	—	`conf`	Biomedical article retrieval using multimodal features and image annotations in region-based CBIR. DRR Daekeun You, Sameer K. Antani, Dina Demner-Fushman, Md. Mahmudur Rahman, Venu Govindaraju, George R. Thoma
2010	J	`jnl`	Extracting Rx information from clinical narrative. J. Am. Medical Informatics Assoc. James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson
2010	—	`conf`	Identifying contextual information in clinical texts: a study of two domains. Semantic Mining in Biomedicine Emilia Apostolova, Noriko Tomuro, Dina Demner-Fushman
2010	J	`jnl`	Interactive publication: The document as a research tool. J. Web Semant. George R. Thoma, Glenn Ford, Sameer K. Antani, Dina Demner-Fushman, Michael Chung, Matthew S. Simpson
2010	—	`ed.`	Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010 BioNLP@ACL K. Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2010	—	`conf`	Text- and Content-based Approaches to Image Modality Detection and Retrieval for the ImageCLEF 2010 Medical Retrieval Track. CLEF (Notebook Papers/LABs/Workshops) Matthew S. Simpson, Md. Mahmudur Rahman, Sachin Singhal, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma
2010	—	`conf`	Towards Automating the Initial Screening Phase of a Systematic Review. MedInfo Tanja Bekhuis, Dina Demner-Fushman
2010	J	`jnl`	UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. J. Biomed. Informatics Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson
2009	J	`jnl`	Annotation and retrieval of clinically relevant images. Int. J. Medical Informatics Dina Demner-Fushman, Sameer K. Antani, Matthew S. Simpson, George R. Thoma
2009	J	`jnl`	Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation. J. Biomed. Informatics Marcelo Fiszman, Dina Demner-Fushman, Halil Kilicoglu, Thomas C. Rindflesch
2009	—	`conf`	Figure content analysis for improved biomedical article retrieval. DRR Daekeun You, Emilia Apostolova, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
2009	—	`conf`	Multi-modal Query Expansion Based on Local Analysis for Medical Image Retrieval. MCBR-CDS Md. Mahmudur Rahman, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma
2009	—	`ed.`	Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009 BioNLP@HLT-NAACL Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2009	—	`conf`	Text- and Content-based Approaches to Image Retrieval for the ImageCLEF 2009 Medical Retrieval Track. CLEF (Working Notes) Matthew S. Simpson, Md. Mahmudur Rahman, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma
2009	J	`jnl`	The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers. BMC Bioinform. Casey Lynnette Overby, Peter Tarczy-Hornoch, Dina Demner-Fushman
2009	—	`conf`	Towards Automatic Image Region Annotation - Image Region Textual Coreference Resolution. HLT-NAACL (Short Papers) Emilia Apostolova, Dina Demner-Fushman
2009	A	`conf`	Using Non-Lexical Features to Identify Effective Indexing Terms for Biomedical Illustrations. EACL Matthew S. Simpson, Dina Demner-Fushman, Charles Sneiderman, Sameer K. Antani, George R. Thoma
2009	J	`jnl`	Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence. J. Am. Medical Informatics Assoc. Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes
2009	J	`jnl`	What can natural language processing do for clinical decision support? J. Biomed. Informatics Dina Demner-Fushman, Wendy Webber Chapman, Clement J. McDonald
2008	Misc	`conf`	A Prototype System to Support Evidence-based Practice. AMIA Dina Demner-Fushman, Charlotte A. Seckman, Cheryl Fisher, Susan E. Hauser, Jennifer Clayton, George R. Thoma
2008	—	`conf`	Adapting Naturally Occurring Test Suites for Evaluation of Clinical Question Answering. SETQALNLP Dina Demner-Fushman
2008	—	`conf`	Exploring use of images in clinical articles for decision support in evidence-based medicine. DRR Sameer K. Antani, Dina Demner-Fushman, Jiang Li, Balaji Vasan Srinivasan, George R. Thoma
2008	Misc	`conf`	Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing. AMIA Alan R. Aronson, James G. Mork, Aurélie Névéol, Sonya E. Shooshan, Dina Demner-Fushman
2008	—	`ed.`	Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008 BioNLP Dina Demner-Fushman, Sophia Ananiadou, Kevin Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2008	J	`jnl`	Themes in biomedical natural language processing: BioNLP08. BMC Bioinform. Dina Demner-Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2008	Misc	`conf`	Toward Automatic Recognition of High Quality Clinical Evidence. AMIA Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes
2007	J	`jnl`	Answering Clinical Questions with Knowledge-Based and Statistical Techniques. Comput. Linguistics Dina Demner-Fushman, Jimmy Lin
2007	J	`jnl`	Application of Information Technology: Essie: A Concept-based Search Engine for Structured Biomedical Text. J. Am. Medical Informatics Assoc. Nicholas C. Ide, Russell F. Loane, Dina Demner-Fushman
2007	—	`conf`	Automatically Finding Images for Clinical Decision Support. ICDM Workshops Dina Demner-Fushman, Sameer K. Antani, Mohammad-Reza Siadat, Hamid Soltanian-Zadeh, Farshad Fotouhi, Kost V. Elisevich
2007	—	`ed.`	Biological, translational, and clinical language processing, BioNLP@ACL 2007, Prague, Czech Republic, June 29, 2007 BioNLP@ACL K. Bretonnel Cohen, Dina Demner-Fushman, Carol Friedman, Lynette Hirschman, John Pestian
2007	—	`conf`	Combining Resources to Find Answers to Biomedical Questions. TREC Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson
2007	Misc	`conf`	Extracting Semantic Predications from Medline Citations for Pharmacogenomics. Pacific Symposium on Biocomputing Caroline B. Ahlers, Marcelo Fiszman, Dina Demner-Fushman, François-Michel Lang, Thomas C. Rindflesch
2007	—	`conf`	From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. BioNLP@ACL Alan R. Aronson, Olivier Bodenreider, Dina Demner-Fushman, Kin Wah Fung, Vivian K. Lee, James G. Mork, Aurélie Névéol, Lee B. Peters, Willie J. Rogers
2007	J	`jnl`	Frontiers of biomedical text mining: current progress. Briefings Bioinform. Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin Bretonnel Cohen
2007	—	`conf`	Interpreting comparative constructions in biomedical text. BioNLP@ACL Marcelo Fiszman, Dina Demner-Fushman, François-Michel Lang, Philip Goetz, Thomas C. Rindflesch
2007	J	`jnl`	Research Paper: Knowledge-based Methods to Help Clinicians Find Answers in MEDLINE. J. Am. Medical Informatics Assoc. Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Nicholas C. Ide, Thomas C. Rindflesch
2007	J	`jnl`	Research Paper: Using Wireless Handheld Computers to Seek Information at the Point of Care: An Evaluation by Clinicians. J. Am. Medical Informatics Assoc. Susan E. Hauser, Dina Demner-Fushman, Joshua L. Jacobs, Susanne M. Humphrey, Glenn Ford, George R. Thoma
2007	Misc	`conf`	Semantic Clustering of Answers to Clinical Questions. AMIA Jimmy Lin, Dina Demner-Fushman
2007	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, K. Bretonnel Cohen
2006	A*	`conf`	Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering. ACL Dina Demner-Fushman, Jimmy Lin
2006	—	`—`	Complex Question Answering based on a Semantic Domain Model of Clinical Medicine. Dina Demner-Fushman
2006	Misc	`conf`	Evaluation of PICO as a Knowledge Representation for Clinical Questions. AMIA Xiaoli Huang, Jimmy Lin, Dina Demner-Fushman
2006	A*	`conf`	Exploring the limits of single-iteration clarification dialogs. SIGIR Jimmy Lin, Philip Fei Wu, Dina Demner-Fushman, Eileen G. Abels
2006	—	`conf`	Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. TREC Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Alan R. Aronson
2006	—	`conf`	Generative Content Models for Structural Analysis of Medical Abstracts. BioNLP@NAACL-HLT Jimmy Lin, Damianos G. Karakos, Dina Demner-Fushman, Sanjeev Khudanpur
2006	Misc	`conf`	MEDLINE as a Source of Just-in-Time Answers to Clinical Questions. AMIA Dina Demner-Fushman, Susan E. Hauser, Susanne M. Humphrey, Glenn Ford, Joshua L. Jacobs, George R. Thoma
2006	J	`jnl`	Methods for automatically evaluating answers to complex questions. Inf. Retr. Jimmy Lin, Dina Demner-Fushman
2006	Misc	`conf`	Preliminary Comparison of Three Search Engines for Point of Care Access to MEDLINE AMIA Susan E. Hauser, Dina Demner-Fushman, Glenn Ford, Joshua L. Jacobs, George R. Thoma
2006	J	`jnl`	Research Paper: Automatically Identifying Health Outcome Information in MEDLINE Records. J. Am. Medical Informatics Assoc. Dina Demner-Fushman, Barbara Few, Susan E. Hauser, George R. Thoma
2006	Misc	`conf`	Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline. AMIA Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Graciela Rosemblat, François-Michel Lang, Daphne Norwood, Thomas C. Rindflesch
2006	A*	`conf`	The role of knowledge in conceptual retrieval: a study in the domain of clinical medicine. SIGIR Jimmy Lin, Dina Demner-Fushman
2006	—	`conf`	Will Pyramids Built of Nuggets Topple Over?. HLT-NAACL Jimmy Lin, Dina Demner-Fushman
2006	J	`jnl`	Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment. J. Assoc. Inf. Sci. Technol. Susanne M. Humphrey, Willie J. Rogers, Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch
2005	Misc	`conf`	"Bag of Words" is not enough for Strength of Evidence Classification. AMIA Jimmy Lin, Dina Demner-Fushman
2005	—	`conf`	A Menagerie of Tracks at Maryland: HARD, Enterprise, QA, and Genomics, Oh My! TREC Jimmy Lin, Eileen G. Abels, Dina Demner-Fushman, Douglas W. Oard, Philip Fei Wu, Yejun Wu
2005	—	`conf`	Automatically Evaluating Answers to Definition Questions. HLT/EMNLP Jimmy Lin, Dina Demner-Fushman
2005	—	`conf`	Evaluating Summaries and Answers: Two Sides of the Same Coin? IEEvaluation@ACL Jimmy Lin, Dina Demner-Fushman
2005	—	`conf`	Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents. TREC Alan R. Aronson, Dina Demner-Fushman, Susanne M. Humphrey, Jimmy Lin, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Hongfang Liu
2005	Misc	`conf`	Semantic characteristics of MEDLINE citations useful for therapeutic decision-making. AMIA Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Thomas C. Rindflesch
2005	Misc	`conf`	The Role of Title, Metadata and Abstract in Identifying Clinically Relevant Journal Articles. AMIA Dina Demner-Fushman, Susan E. Hauser, George R. Thoma
2004	B	`conf`	A Testbed System for Mobile Point-of-Care Information Delivery. CBMS Susan E. Hauser, Dina Demner-Fushman, Glenn Ford, George R. Thoma
2004	—	`conf`	A Usability Study of the PubMed on Tap User Interface for PDAs. MedInfo Gregory L. Alexander, Susan E. Hauser, Karen Steely, Glenn Ford, Dina Demner-Fushman
2004	—	`conf`	Improving Passage Retrieval Using Interactive Elicition and Statistical Modeling. TREC Daqing He, Dina Demner-Fushman, Douglas W. Oard, Damianos G. Karakos, Sanjeev Khudanpur
2004	—	`conf`	Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu
2004	—	`conf`	Organizing Literature Information for Clinical Decision Support. MedInfo Dina Demner-Fushman, Susan E. Hauser, Glenn Ford, George R. Thoma
2004	—	`conf`	PubMed on Tap: Discovering Design Principles for Online Information Delivery to Handheld Computers. MedInfo Susan E. Hauser, Dina Demner-Fushman, Glenn Ford, George R. Thoma
2003	—	`conf`	Correcting OCR text by association with historical datasets. DRR Susan E. Hauser, Jonathan Schlaifer, Tehseen F. Sabir, Dina Demner-Fushman, Scott Straughan, George R. Thoma
2003	—	`conf`	HARD Experiment at Maryland: From Need Negotiation to Automated HARD Process. TREC Daqing He, Dina Demner-Fushman
2003	J	`jnl`	Making MIRACLEs: Interactive translingual search for Cebuano and Hindi. ACM Trans. Asian Lang. Inf. Process. Daqing He, Douglas W. Oard, Jianqiang Wang, Jun Luo, Dina Demner-Fushman, Kareem Darwish, Philip Resnik, Sanjeev Khudanpur, Michael Nossal, Michael Subotin, Anton Leuski
2003	—	`conf`	Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell F. Loane, James G. Mork, Olivier Bodenreider
2003	—	`conf`	The Effect of Bilingual Term List Size on Dictionary-Based Cross-Language Information Retrieval. HICSS Dina Demner-Fushman, Douglas W. Oard
2002	—	`conf`	Cross-Language Access to Recorded Speech in the MALACH Project. TSD Douglas W. Oard, Dina Demner-Fushman, Jan Hajic, Bhuvana Ramabhadran, Samuel Gustman, William J. Byrne, Dagobert Soergel, Bonnie J. Dorr, Philip Resnik, Michael Picheny