Di He

12 papers Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins.
PLoS Comput. Biol.
Tian Cai, Li Xie, Shuo Zhang, Muge Chen, Di He, Amitesh Badkul, Yang Liu, Hari Krishna Namballa, Michael Dorogan, Wayne W. Harding, Cameron Mura, Philip E. Bourne, Lei Xie
2022 J jnl
A context-aware deconfounding autoencoder for robust prediction of personalized clinical drug response from cell-line compound screening.
Nat. Mac. Intell.
Di He, Qiao Liu, You Wu, Lei Xie
2021 J jnl
A cross-level information transmission network for hierarchical omics data integration and phenotype prediction from a new genotype.
Bioinform.
Di He, Lei Xie
2021 J jnl
CODE-AE: A Coherent De-confounding Autoencoder for Predicting Patient-Specific Drug Response From Cell Line Transcriptomics.
CoRR
Di He, Lei Xie
2021 J jnl
Exploration of Dark Chemical Genomics Space via Portal Learning: Applied to Targeting the Undruggable Genome and COVID-19 Anti-Infective Polypharmacology.
CoRR
Tian Cai, Li Xie, Muge Chen, Yang Liu, Di He, Shuo Zhang, Cameron Mura, Philip E. Bourne, Lei Xie
2021 — —
Learn Biologically Meaningful Representation with Transfer Learning.
Di He
2020 J jnl
A Cross-Level Information Transmission Network for Predicting Phenotype from New Genotype: Application to Cancer Precision Medicine.
CoRR
Di He, Lei Xie
2019 J jnl
Prediction of off-target specificity and cell-specific fitness of CRISPR-Cas System using attention boosted deep learning and network-based gene feature.
PLoS Comput. Biol.
Qiao Liu, Di He, Lei Xie
2019 J jnl
Rational discovery of dual-indication multi-target PDE/Kinase inhibitor for precision anti-cancer therapy using structural systems pharmacology.
PLoS Comput. Biol.
Hansaim Lim, Di He, Yue Qiu, Patrycja Krawczuk, Xiaoru Sun, Lei Xie
2018 J jnl
Association rule mining algorithms on high-dimensional datasets.
Artif. Life Robotics
Dongmei Ai, Hongfei Pan, Xiaoxin Li, Yingxin Gao, Di He
2017 J jnl
JDINAC: joint density-based non-parametric differential interaction network analysis and classification using high-dimensional sparse omics data.
Bioinform.
Jiadong Ji, Di He, Yang Feng, Yong He, Fuzhong Xue, Lei Xie
2016 J jnl
Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing.
PLoS Comput. Biol.
Hansaim Lim, Aleksandar Poleksic, Yuan Yao, Hanghang Tong, Di He, Luke Zhuang, Patrick Meng, Lei Xie