Dexuan Xie - RankMe

45 papers C 1Journal 43Unranked 1

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	An efficient finite element solver for a nonlocal size modified Poisson-Boltzmann model of proteins in multi-species ionic solutions. J. Comput. Appl. Math. Dexuan Xie, Liam Jemison, Yi Jiang
2026	J	`jnl`	Nonlocal nonuniform size modified Poisson-Boltzmann model and efficient finite element solver for protein electrostatics and ion distributions. Commun. Nonlinear Sci. Numer. Simul. Dexuan Xie
2025	J	`jnl`	A Nonlocal size modified Poisson-Boltzmann Model and Its Finite Element Solver for Protein in Multi-Species Ionic Solution. CoRR Dexuan Xie, Liam Jemison, Yi Jiang
2025	J	`jnl`	Ionic flux calculation by an extended Goldman-Hodgkin-Katz equation accounting for nonlinear ion channel electrostatics. Int. J. Comput. Math. Dexuan Xie, Ranjan K. Dash
2025	J	`jnl`	VDAC Solvation Free Energy Calculation by a Nonuniform Size Modified Poisson-Boltzmann Ion Channel Model. J. Comput. Chem. Liam Jemison, Matthew Stahl, Ranjan K. Dash, Dexuan Xie
2024	J	`jnl`	A PNP ion channel deep learning solver with local neural network and finite element input data. CoRR Hwi Lee, Zhen Chao, Harris Cobb, Yingjie Liu, Dexuan Xie
2024	J	`jnl`	A PNP ion channel deep learning solver with local neural network and finite element input data. Mach. Learn. Sci. Technol. Hwi Lee, Zhen Chao, Harris Cobb, Yingjie Liu, Dexuan Xie
2024	J	`jnl`	An Efficient Finite Element Solver for a Nonuniform size-modified Poisson-Nernst-Planck Ion Channel Model. CoRR Dexuan Xie
2024	J	`jnl`	An efficient finite element solver for a nonuniform size-modified Poisson-Nernst-Planck ion channel model. J. Comput. Phys. Dexuan Xie
2024	J	`jnl`	Deep learning-driven pulmonary arteries and veins segmentation reveals demography-associated pulmonary vasculature anatomy. CoRR Yuetan Chu, Gongning Luo, Longxi Zhou, Shaodong Cao, Guolin Ma, Xianglin Meng, Juexiao Zhou, Changchun Yang, Dexuan Xie, Ricardo Henao, Xigang Xiao, Lianming Wu, Zhaowen Qiu, Xin Gao
2023	J	`jnl`	A Poisson-Nernst-Planck single ion channel model and its effective finite element solver. J. Comput. Phys. Dexuan Xie, Zhen Chao
2022	J	`jnl`	An efficient finite element iterative method for solving a nonuniform size modified Poisson-Boltzmann ion channel model. J. Comput. Phys. Dexuan Xie
2022	J	`jnl`	An interpretable deep learning workflow for discovering subvisual abnormalities in CT scans of COVID-19 inpatients and survivors. Nat. Mach. Intell. Longxi Zhou, Xianglin Meng, Yuxin Huang, Kai Kang, Juexiao Zhou, Yuetan Chu, Haoyang Li, Dexuan Xie, Jiannan Zhang, Weizhen Yang, Na Bai, Yi Zhao, Mingyan Zhao, Guohua Wang, Lawrence Carin, Xigang Xiao, Kaijiang Yu, Zhaowen Qiu, Xin Gao
2022	J	`jnl`	Efficient Generation of Membrane and Solvent Tetrahedral Meshes for Ion Channel Finite Element Calculation. CoRR Zhen Chao, Sheng Gui, Benzhuo Lu, Dexuan Xie
2021	J	`jnl`	An Efficient Finite Element Iterative Method for Solving a Nonuniform Size Modified Poisson-Boltzmann Ion Channel Model. CoRR Dexuan Xie
2021	J	`jnl`	An improved Poisson-Nernst-Planck ion channel model and numerical studies on effects of boundary conditions, membrane charges, and bulk concentrations. J. Comput. Chem. Zhen Chao, Dexuan Xie
2021	J	`jnl`	Cover Image. J. Comput. Chem. Zhen Chao, Dexuan Xie
2020	J	`jnl`	A Rapid, Accurate and Machine-Agnostic Segmentation and Quantification Method for CT-Based COVID-19 Diagnosis. IEEE Trans. Medical Imaging Longxi Zhou, Zhongxiao Li, Juexiao Zhou, Haoyang Li, Yupeng Chen, Yuxin Huang, Dexuan Xie, Lintao Zhao, Ming Fan, Shahrukh Hashmi, Faisal Abdelkareem, Riham Eiada, Xigang Xiao, Lihua Li, Zhaowen Qiu, Xin Gao
2020	J	`jnl`	A finite element iterative solver for a PNP ion channel model with Neumann boundary condition and membrane surface charge. J. Comput. Phys. Dexuan Xie, Zhen Chao
2020	J	`jnl`	A size-modified poisson-boltzmann ion channel model in a solvent of multiple ionic species: Application to voltage-dependent anion channel. J. Comput. Chem. Dexuan Xie, Said H. Audi, Ranjan K. Dash
2020	J	`jnl`	An Effective Finite Element Iterative Solver for a Poisson-Nernst-Planck Ion Channel Model with Periodic Boundary Conditions. SIAM J. Sci. Comput. Dexuan Xie, Benzhuo Lu
2020	J	`jnl`	Preconditioners for nonsymmetric indefinite linear systems. J. Comput. Appl. Math. Zhen Chao, Dexuan Xie, Ahmed H. Sameh
2019	J	`jnl`	Study of local and nonlocal Poisson-Boltzmann equations for linear and nonlinear models with spherical symmetry. J. Comput. Appl. Math. Hans Volkmer, Dexuan Xie
2018	J	`jnl`	Series solution of a nonlocal dielectric test model for a solute ball with point charges in an ionic solvent. Commun. Inf. Syst. Hans Volkmer, Dexuan Xie
2017	J	`jnl`	SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation. J. Comput. Chem. Yang Xie, Jinyong Ying, Dexuan Xie
2016	J	`jnl`	A new box iterative method for a class of nonlinear interface problems with application in solving Poisson-Boltzmann equation. J. Comput. Appl. Math. Dexuan Xie, Jinyong Ying
2016	J	`jnl`	A nonlocal modified Poisson-Boltzmann equation and finite element solver for computing electrostatics of biomolecules. J. Comput. Phys. Dexuan Xie, Yi Jiang
2015	J	`jnl`	A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule. J. Comput. Phys. Jinyong Ying, Dexuan Xie
2014	J	`jnl`	New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics. J. Comput. Phys. Dexuan Xie
2013	J	`jnl`	Efficient Algorithms for a Nonlocal Dielectric Model for Protein in Ionic Solvent. SIAM J. Sci. Comput. Dexuan Xie, Yi Jiang, L. Ridgway Scott
2012	J	`jnl`	A Fast Solver for a Nonlocal Dielectric Continuum Model. SIAM J. Sci. Comput. Dexuan Xie, Yi Jiang, Peter R. Brune, L. Ridgway Scott
2011	J	`jnl`	An improved approximate Newton method for implicit Runge-Kutta formulas. J. Comput. Appl. Math. Dexuan Xie
2011	J	`jnl`	Convergence analysis of truncated incomplete Hessian Newton minimization method and application in biomolecular potential energy minimization. Comput. Optim. Appl. Dexuan Xie, Mazen G. Zarrouk
2009	J	`jnl`	An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model. J. Comput. Phys. Dexuan Xie, Ranjan K. Dash, Daniel A. Beard
2009	J	`jnl`	An incomplete Hessian Newton minimization method and its application in a chemical database problem. Comput. Optim. Appl. Dexuan Xie, Qin Ni
2009	J	`jnl`	New parallel symmetric SOR preconditioners by multi-type partitioning. Int. J. Comput. Math. Dexuan Xie
2006	J	`jnl`	A New Block Parallel SOR Method and Its Analysis. SIAM J. Sci. Comput. Dexuan Xie
2004	C	`conf`	An Effective Compressed Sparse Preconditioner for Large Scale Biomolecular Simulations. CIS Dexuan Xie
2004	—	`conf`	New Block Parallel SOR Methods by Multi-type Partitions. ICPP Workshops Dexuan Xie
2003	J	`jnl`	Principal component analysis combined with truncated-Newton minimization for dimensionality reduction of chemical databases. Math. Program. Dexuan Xie, Suresh B. Singh, Eugene M. Fluder
2002	J	`jnl`	A More Lenient Stopping Rule for Line Search Algorithms. Optim. Methods Softw. Dexuan Xie, Tamar Schlick
2000	J	`jnl`	An Efficient Projection Protocol for Chemical Databases: Singular Value Decomposition Combined with Truncated-Newton Minimization. J. Chem. Inf. Comput. Sci. Dexuan Xie, Alexander Tropsha, Tamar Schlick
1999	J	`jnl`	Efficient Implementation of the Truncated-Newton Algorithm for Large-Scale Chemistry Applications. SIAM J. Optim. Dexuan Xie, Tamar Schlick
1999	J	`jnl`	New Parallel SOR Method by Domain Partitioning. SIAM J. Sci. Comput. Dexuan Xie, Loyce Adams
1999	J	`jnl`	Remark on Algorithm 702 - the updated truncated Newton minimization package. ACM Trans. Math. Softw. Dexuan Xie, Tamar Schlick