Desmond G. Higgins

41 papers A 1Journal 39Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction.
Bioinform.
Fabian Sievers, Desmond G. Higgins
2017 J jnl
Protein multiple sequence alignment benchmarking through secondary structure prediction.
Bioinform.
Quan Le, Fabian Sievers, Desmond G. Higgins
2016 J jnl
ProViz - a web-based visualization tool to investigate the functional and evolutionary features of protein sequences.
Nucleic Acids Res.
Peter Jehl, Jean Manguy, Denis C. Shields, Desmond G. Higgins, Norman E. Davey
2016 J jnl
Using
Bioinform.
Gearoid Fox, Fabian Sievers, Desmond G. Higgins
2015 J jnl
Instability in progressive multiple sequence alignment algorithms.
Algorithms Mol. Biol.
Kieran Boyce, Fabian Sievers, Desmond G. Higgins
2015 J jnl
OD-seq: outlier detection in multiple sequence alignments.
BMC Bioinform.
Peter Jehl, Fabian Sievers, Desmond G. Higgins
2014 J jnl
GWIPS-viz: development of a ribo-seq genome browser.
Nucleic Acids Res.
Audrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov
2014 J jnl
Systematic exploration of guide-tree topology effects for small protein alignments.
BMC Bioinform.
Fabian Sievers, Graham M. Hughes, Desmond G. Higgins
2013 J jnl
Making automated multiple alignments of very large numbers of protein sequences.
Bioinform.
Fabian Sievers, David Dineen, Andreas Wilm, Desmond G. Higgins
2010 J jnl
Detecting microRNA activity from gene expression data.
BMC Bioinform.
Stephen F. Madden, Susan B. Carpenter, Ian B. Jeffery, Harry Björkbacka, Katherine A. Fitzgerald, Luke A. O'Neill, Desmond G. Higgins
2010 J jnl
Sequence embedding for fast construction of guide trees for multiple sequence alignment.
Algorithms Mol. Biol.
Gordon Blackshields, Fabian Sievers, Weifeng Shi, Andreas Wilm, Desmond G. Higgins
2008 J jnl
Distinct Patterns in the Regulation and Evolution of Human Cancer Genes.
Silico Biol.
Simon J. Furney, Stephen F. Madden, Tomasz A. Kisiel, Desmond G. Higgins, Núria López-Bigas
2008 J jnl
Fast embedding methods for clustering tens of thousands of sequences.
Comput. Biol. Chem.
Gordon Blackshields, Mark A. Larkin, Iain M. Wallace, Andreas Wilm, Desmond G. Higgins
2008 J jnl
R-Coffee: a web server for accurately aligning noncoding RNA sequences.
Nucleic Acids Res.
Sébastien Moretti, Andreas Wilm, Desmond G. Higgins, Ioannis Xenarios, Cédric Notredame
2007 J jnl
Clustal W and Clustal X version 2.0.
Bioinform.
Mark A. Larkin, Gordon Blackshields, Nigel P. Brown, R. Chenna, Paul A. McGettigan, Hamish McWilliam, Franck Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez, Julie Dawn Thompson, Toby J. Gibson, Desmond G. Higgins
2007 J jnl
Integrating transcription factor binding site information with gene expression datasets.
Bioinform.
Ian B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perrière, Aedín C. Culhane, Desmond G. Higgins
2007 J jnl
Supervised multivariate analysis of sequence groups to identify specificity determining residues.
BMC Bioinform.
Iain M. Wallace, Desmond G. Higgins
2007 J jnl
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
Nucleic Acids Res.
Sébastien Moretti, Fabrice Armougom, Iain M. Wallace, Desmond G. Higgins, C. Victor Jongeneel, Cédric Notredame
2006 J jnl
APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
Bioinform.
Fabrice Armougom, Olivier Poirot, Sébastien Moretti, Desmond G. Higgins, Phillip Bucher, Vladimir Keduas, Cédric Notredame
2006 J jnl
Analysis and Comparison of Benchmarks for Multiple Sequence Alignment.
Silico Biol.
Gordon Blackshields, Iain M. Wallace, Mark A. Larkin, Desmond G. Higgins
2006 J jnl
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.
BMC Bioinform.
Ian B. Jeffery, Desmond G. Higgins, Aedín C. Culhane
2005 J jnl
Evaluation of iterative alignment algorithms for multiple alignment.
Bioinform.
Iain M. Wallace, Orla O'Sullivan, Desmond G. Higgins
2005 J jnl
MADE4: an R package for multivariate analysis of gene expression data.
Bioinform.
Aedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins
2003 A conf
A SAT-Based Approach to Multiple Sequence Alignment.
CP
Steven D. Prestwich, Desmond G. Higgins, Orla O'Sullivan
2003 — conf
APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.
ISMB (Supplement of Bioinformatics)
Orla O'Sullivan, Mark Zehnder, Desmond G. Higgins, Philipp Bucher, Aurélien Grosdidier, Cédric Notredame
2003 J jnl
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.
BMC Bioinform.
Aedín C. Culhane, Guy Perrière, Desmond G. Higgins
2003 J jnl
Multiple sequence alignment with the Clustal series of programs.
Nucleic Acids Res.
Chenna Ramu, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie Dawn Thompson
2002 J jnl
Between-group analysis of microarray data.
Bioinform.
Aedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, Desmond G. Higgins
1999 J jnl
MIAH: automatic alignment of eukaryotic SSU rRNAs.
Bioinform.
Patricia Thébault, Pierre Monestie, Annette McGrath, Desmond G. Higgins
1998 J jnl
COFFEE: an objective function for multiple sequence alignments.
Bioinform.
Cédric Notredame, Liisa Holm, Desmond G. Higgins
1998 J jnl
Empirical estimation of the reliability of ribosomal RNA alignments.
Bioinform.
Emmet A. O'Brien, Desmond G. Higgins
1998 J jnl
Optimization of ribosomal RNA profile alignments.
Bioinform.
Emmet A. O'Brien, Cédric Notredame, Desmond G. Higgins
1994 J jnl
Improved sensitivity of profile searches through the use of sequence weights and gap excision.
Comput. Appl. Biosci.
Julie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson
1993 J jnl
The EMBL data library.
Nucleic Acids Res.
Catherine M. Rice, Rainer Fuchs, Desmond G. Higgins, Peter Stoehr, Graham Cameron
1992 J jnl
CLUSTAL V: improved software for multiple sequence alignment.
Comput. Appl. Biosci.
Desmond G. Higgins, Alan J. Bleasby, Rainer Fuchs
1992 J jnl
EMBLSCAN: fast approximate DNA database searches on compact disc.
Comput. Appl. Biosci.
Desmond G. Higgins, Peter Stoehr
1992 J jnl
GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content.
Comput. Appl. Biosci.
Denis C. Shields, Desmond G. Higgins, P. M. Sharp
1992 J jnl
OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity.
Comput. Appl. Biosci.
Jaap Heringa, Hubert Sommerfeldt, Desmond G. Higgins, Patrick Argos
1992 J jnl
Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets.
Comput. Appl. Biosci.
Desmond G. Higgins
1989 J jnl
Fast and sensitive multiple sequence alignments on a microcomputer.
Comput. Appl. Biosci.
Desmond G. Higgins, P. M. Sharp
1987 J jnl
Interfacing similarity search software with the sequence retrieval system ACNUC.
Comput. Appl. Biosci.
Desmond G. Higgins, Manolo Gouy