Desh Ranjan - RankMe

104 papers A* 2A 3B 10C 7Misc 8Journal 41Unranked 30

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	ZEUS: An Efficient GPU Optimization Method Integrating PSO, BFGS, and Automatic Differentiation. CoRR Dominik Soós, Marc F. Paterno, Desh Ranjan, Mohammad Zubair
2025	—	`conf`	A Header-Based C++ Library for Computing Hessian on GPU using Automatic Differentiation. IPDPS (Workshops) Desh Ranjan, Mohammad Zubair
2025	—	`conf`	Development and Deployment of a Genomic Cancer Data Extraction Pipeline on the Cloud. IPDPS (Workshops) Eleni Adam, Terry Stilwell, Desh Ranjan, Harold Riethman
2025	Misc	`conf`	ZEUS: An Efficient GPU Optimization Method Integrating PSO, BFGS, and Automatic Differentiation. HiPC Dominik Soós, Marc F. Paterno, Desh Ranjan, Mohammad Zubair
2024	J	`jnl`	An AD based library for Efficient Hessian and Hessian-Vector Product Computation on GPU. CoRR Desh Ranjan, Mohammad Zubair
2023	Misc	`conf`	Efficient GPU Implementation of Automatic Differentiation for Computational Fluid Dynamics. HiPC Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric J. Nielsen, Boris Diskin, Marc F. Paterno, Samuel Jung, Joshua Hoke Davis
2023	C	`conf`	Porting Numerical Integration Codes from CUDA to oneAPI: A Case Study. ISC Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2023	J	`jnl`	Porting numerical integration codes from CUDA to oneAPI: a case study. CoRR Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2022	J	`jnl`	NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads. BMC Bioinform. Eleni Adam, Desh Ranjan, Harold Riethman
2022	J	`jnl`	m-CUBES An efficient and portable implementation of multi-dimensional integration for gpus. CoRR Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2022	C	`conf`	m-Cubes: An Efficient and Portable Implementation of Multi-dimensional Integration for GPUs. ISC Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2021	J	`jnl`	Analysis of Subtelomeric REXTAL Assemblies Using QUAST. IEEE ACM Trans. Comput. Biol. Bioinform. Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, Harold Riethman
2021	J	`jnl`	PAGANI: A Parallel Adaptive GPU Algorithm for Numerical. CoRR Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2021	A	`conf`	PAGANI: a parallel adaptive GPU algorithm for numerical integration. SC Ioannis Sakiotis, Kamesh Arumugam, Marc F. Paterno, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2019	Misc	`conf`	Efficient Parallel Multi-bunch Beam-Beam Simulation in Particle Colliders. HiPC Ioannis Sakiotis, Kamesh Arumugam, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2019	C	`conf`	Nanopore Guided Assembly of Segmental Duplications Near Telomeres. BIBE Eleni Adam, Tunazzina Islam, Desh Ranjan, Harold Riethman
2018	—	`conf`	REXTAL: Regional Extension of Assemblies Using Linked-Reads. ISBRA Tunazzina Islam, Desh Ranjan, Eleanor Young, Ming Xiao, Mohammad Zubair, Harold Riethman
2017	B	`conf`	A Machine Learning Approach for Efficient Parallel Simulation of Beam Dynamics on GPUs. ICPP Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Balsa Terzic, Alexander N. Godunov, Tunazzina Islam
2017	J	`jnl`	An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images. IEEE ACM Trans. Comput. Biol. Bioinform. Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al-Nasr, Jing He
2017	—	`conf`	GPU-accelerated high-fidelity simulation of beam-beam effects in particle colliders. SummerSim Kamesh Arumugam, Ravi Teja Majeti, Desh Ranjan, Mohammad Zubair, Alexander N. Godunov, Balsa Terzic
2016	—	`conf`	Challenges in matching secondary structures in cryo-EM: An exploration. BIBM Devin Haslam, Mohammad Zubair, Desh Ranjan, Abhishek Biswas, Jing He
2016	Misc	`conf`	Memory-Efficient Parallel Simulation of Electron Beam Dynamics Using GPUs. HiPC Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Balsa Terzic, Alexander N. Godunov
2016	—	`conf`	Optimizing a Multiple Right-Hand Side Dslash Kernel for Intel Knights Corner. ISC Workshops Aaron Walden, Sabbir Ahmed Khan, Bálint Joó, Desh Ranjan, Mohammad Zubair
2015	J	`jnl`	A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data. J. Comput. Biol. Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He
2015	—	`conf`	A Novel Computational Method for Deriving Protein Secondary Structure Topologies Using Cryo-EM Density Maps and Multiple Secondary Structure Predictions. ISBRA Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He
2015	—	`conf`	High-fidelity simulation of collective effects in electron beams using an innovative parallel method. SummerSim Kamesh Arumugam, Desh Ranjan, Mohammad Zubair, Alexander N. Godunov, Balsa Terzic
2015	J	`jnl`	ISQuest: finding insertion sequences in prokaryotic sequence fragment data. Bioinform. Abhishek Biswas, David Gauthier, Desh Ranjan, Mohammad Zubair
2014	—	`conf`	Big data challenges for estimating genome assembler quality. BCB Abhishek Biswas, David Gauthier, Desh Ranjan, Mohammad Zubair
2014	—	`conf`	Maximal clique enumeration for large graphs on hadoop framework. PPAA@PPoPP Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
2014	—	`conf`	ParK: An efficient algorithm for k-core decomposition on multicore processors. IEEE BigData Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
2014	J	`jnl`	Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He
2014	B	`conf`	pbitMCE: A bit-based approach for maximal clique enumeration on multicore processors. ICPADS Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
2013	—	`conf`	A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps. BCB Kamal Al-Nasr, Lin Chen, Desh Ranjan, Mohammad Zubair, Dong Si, Jing He
2013	Misc	`conf`	A memory efficient algorithm for adaptive multidimensional integration with multiple GPUs. HiPC Kamesh Arumugam, Alexander N. Godunov, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2013	B	`conf`	An Efficient Deterministic Parallel Algorithm for Adaptive Multidimensional Numerical Integration on GPUs. ICPP Kamesh Arumugam, Alexander N. Godunov, Desh Ranjan, Balsa Terzic, Mohammad Zubair
2013	—	`conf`	Genome Assembly on a Multicore System. TrustCom/ISPA/IUCC Abhishek Biswas, Desh Ranjan, Mohammad Zubair
2013	J	`jnl`	High-performance implementation of planted motif problem on multicore and GPU. Concurr. Comput. Pract. Exp. Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
2012	—	`conf`	Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions. BCB Kamal Al-Nasr, Lin Chen, Dong Si, Desh Ranjan, Mohammad Zubair, Jing He
2012	J	`jnl`	Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data. J. Bioinform. Comput. Biol. Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
2012	J	`jnl`	Upper and lower I/O bounds for pebbling r-pyramids. J. Discrete Algorithms Desh Ranjan, John E. Savage, Mohammad Zubair
2012	J	`jnl`	Vertex isoperimetric parameter of a Computation Graph. Int. J. Found. Comput. Sci. Desh Ranjan, Mohammad Zubair
2011	—	`conf`	A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors. BIBM Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
2011	—	`conf`	High performance implementation of planted motif problem using suffix trees. HPCS Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
2011	J	`jnl`	Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph. J. Bioinform. Comput. Biol. Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
2011	Misc	`conf`	Strong I/O Lower Bounds for Binomial and FFT Computation Graphs. COCOON Desh Ranjan, John E. Savage, Mohammad Zubair
2010	—	`conf`	An efficient multicore implementation of planted motif problem. HPCS Naga Shailaja Dasari, Desh Ranjan, Mohammad Zubair
2010	—	`conf`	Computational and Biological Approach to Understand the 3' UTR-Mediated Posttranscriptional Regulation of Alfalfa Cytosolic Glutamine Synthetase Genes. BICoB Bindu Simon, Champa Sengupta-Gopalan, Pavan K. Yelavarthi, Desh Ranjan
2010	C	`conf`	Upper and Lower I/O Bounds for Pebbling IWOCA Desh Ranjan, John E. Savage, Mohammad Zubair
2009	A	`conf`	Historical sources as a teaching tool. SIGCSE Inna Pivkina, Desh Ranjan, Jerry Lodder
2009	—	`conf`	Lower Bounds for Accessing Information on Pure Pointer Machines. FCS Brian Cloteaux, Desh Ranjan
2007	C	`conf`	Computational Identification of Cis-regulatory Elements Associated with Pungency of Chili Peppers. BIBE Tieming Ji, Desh Ranjan, Jeanne Curry, Mary O'Connell
2007	J	`jnl`	Positive Influence and Negative Dependence. Comb. Probab. Comput. Devdatt P. Dubhashi, Johan Jonasson, Desh Ranjan
2007	Misc	`conf`	Tools for Cis-element Recognition and Phylogenetic Tree Construction Based on Conserved Patterns. CATA Tieming Ji, K. Gopavarapu, Desh Ranjan, B. Vasudevan, Champa Sengupta-Gopalan, Mary O'Connell
2006	A	`conf`	A project in algorithms based on a primary historical source about catalan numbers. SIGCSE David Pengelley, Inna Pivkina, Desh Ranjan, Karen Villaverde
2006	J	`jnl`	Sequential and parallel algorithms for the NCA problem on pure pointer machines. Theor. Comput. Sci. Alessandro Dal Palù, Enrico Pontelli, Desh Ranjan
2006	—	`conf`	Some Separation Results Between Classes of Pointer Algorithms. DCFS Brian Cloteaux, Desh Ranjan
2005	J	`jnl`	A Simple Optimal Solution for the Temporal Precedence Problem on Pure Pointer Machines. Theory Comput. Syst. Enrico Pontelli, Desh Ranjan
2005	B	`conf`	Computational Issues in Exploiting Dependent And-Parallelism in Logic Programming: Leftness Detection in Dynamic Search Trees. LPAR Yao Wu, Enrico Pontelli, Desh Ranjan
2005	J	`jnl`	Identity orientation of complete bipartite graphs. Discret. Math. Frank Harary, Desh Ranjan
2004	B	`conf`	Detecting Local Symmetry Axis in 3-dimensional Virus Structures. APBC Jing He, Desh Ranjan, Wen Jiang, Wah Chiu, Michael F. Schmid
2003	—	`conf`	An Agent-based Domain Specific Framework for Rapid Prototyping of Applications in Evolutionary Biology. DALT Tran Cao Son, Enrico Pontelli, Desh Ranjan, Brook Milligan, Gopal Gupta
2003	B	`conf`	On the Complexity of Dependent And-Parallelism in Logic Programming. ICLP Yao Wu, Enrico Pontelli, Desh Ranjan
2003	J	`jnl`	The Level-Ancestor problem on Pure Pointer Machines. Inf. Process. Lett. Desh Ranjan, Enrico Pontelli
2002	—	`conf`	An Efficient Parallel Pointer Machine Algorithm for the NCA Problem. IFIP TCS Alessandro Dal Palù, Enrico Pontelli, Desh Ranjan
2002	—	`conf`	An Optimal Algorithm for Finding NCA on Pure Pointer Machines. SWAT Alessandro Dal Palù, Enrico Pontelli, Desh Ranjan
2002	J	`jnl`	An optimal data structure to handle dynamic environments in non-deterministic computations. Comput. Lang. Syst. Struct. Enrico Pontelli, Desh Ranjan, Alessandro Dal Palù
2002	B	`conf`	Ancestor Problems on Pure Pointer Machines. LATIN Enrico Pontelli, Desh Ranjan
2002	J	`jnl`	Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins. IEEE Trans. Parallel Distributed Syst. Natsuhiko Futamura, Srinivas Aluru, Desh Ranjan, Bhanu Hariharan
2002	—	`conf`	F-LOG: A Domain Specific Language for Solving Phylogenetic Inference Problems. CSB Enrico Pontelli, Desh Ranjan, Brook Milligan, Gopal Gupta
2002	C	`conf`	Semantics-Based Filtering: Logic Programming's Killer App? PADL Gopal Gupta, Hai-Feng Guo, Arthur I. Karshmer, Enrico Pontelli, Juan Raymundo Iglesias, Desh Ranjan, Brook Milligan, Nayana Datta, Omar El-Khatib, Mohammed Noamany, Xinhong Zhou
2001	C	`conf`	Interoperability between Bioinformatics Tools: A Logic Programming Approach. PADL Juan Raymundo Iglesias, Gopal Gupta, Enrico Pontelli, Desh Ranjan, Brook Milligan
2000	J	`jnl`	Data structures for order-sensitive predicates in parallel nondeterministic systems. Acta Informatica Desh Ranjan, Enrico Pontelli, Gopal Gupta
2000	J	`jnl`	The Temporal Precedence Problem. Algorithmica Desh Ranjan, Enrico Pontelli, Gopal Gupta, Luc Longpré
1999	Misc	`conf`	A Parallel Monte Carlo Algorithm for Protein Accessible Surface Area Computation. HiPC Srinivas Aluru, Desh Ranjan, Natsuhiko Futamura
1999	J	`jnl`	Complexity Analysis of Late Binding in Dynamic Object-Oriented Languages J. Funct. Log. Program. Enrico Pontelli, Desh Ranjan, Gopal Gupta
1999	J	`jnl`	On the Complexity of Or-Parallelism. New Gener. Comput. Desh Ranjan, Enrico Pontelli, Gopal Gupta
1998	J	`jnl`	Balls and bins: A study in negative dependence. Random Struct. Algorithms Devdatt P. Dubhashi, Desh Ranjan
1998	J	`jnl`	Breaking Symmetry in Complete Graphs by Orienting Edges: Asymptotic Bounds. Inf. Process. Lett. Frank Harary, Desh Ranjan
1998	J	`jnl`	Efficient Algorithms for the Temporal Precedence Problem. Inf. Process. Lett. Desh Ranjan, Enrico Pontelli, Gopal Gupta
1998	J	`jnl`	On the Computational Complexity of Some Classical Equivalence Relations on Boolean Functions. Theory Comput. Syst. Bernd Borchert, Desh Ranjan, Frank Stephan
1998	—	`conf`	The Complexity of Late-Binding in Dynamic Object-Oriented Languages. PLILP/ALP Enrico Pontelli, Desh Ranjan, Gopal Gupta
1997	—	`conf`	On the Complexity of Parallel Implementation of Logic Programs. FSTTCS Enrico Pontelli, Desh Ranjan, Gopal Gupta
1997	J	`jnl`	Space-Filling Curves and Their Use in the Design of Geometric Data Structures. Theor. Comput. Sci. Tetsuo Asano, Desh Ranjan, Thomas Roos, Emo Welzl, Peter Widmayer
1996	J	`jnl`	On the Computational Complexity of some Classical Equivalence Relations on Boolean Functions Electron. Colloquium Comput. Complex. Bernd Borchert, Desh Ranjan, Frank Stephan
1995	J	`jnl`	A Simple Proof on the Decidability of Equivalence Between Recursive and Nonrecursive Datalog Programs. Inf. Process. Lett. Hing Leung, Desh Ranjan, Héctor J. Hernández, D. T. Tang, Agustin González
1995	B	`conf`	Space Filling Curves and Their Use in the Design of Geometric Data Structures. LATIN Tetsuo Asano, Desh Ranjan, Thomas Roos, Emo Welzl, Peter Widmayer
1994	J	`jnl`	The Random Oracle Hypothesis Is False. J. Comput. Syst. Sci. Richard Chang, Benny Chor, Oded Goldreich, Juris Hartmanis, Johan Håstad, Desh Ranjan, Pankaj Rohatgi
1993	J	`jnl`	A Tool for the Analysis of Manipulation. Inf. Process. Lett. Desh Ranjan, Daniela Rus
1993	J	`jnl`	Improving Known Solutions is Hard. Comput. Complex. Desh Ranjan, Suresh Chari, Pankaj Rohatgi
1993	—	`ch.`	On IP = PSPACE and Theorems with Narrow Proofs. Current Trends in Theoretical Computer Science Juris Hartmanis, Richard Chang, Desh Ranjan, Pankaj Rohatgi
1993	J	`jnl`	Quantifiers and Approximation. Theor. Comput. Sci. Alessandro Panconesi, Desh Ranjan
1993	—	`ch.`	Relativization: a Revisionistic Retrospective. Current Trends in Theoretical Computer Science Juris Hartmanis, Richard Chang, Suresh Chari, Desh Ranjan, Pankaj Rohatgi
1993	—	`conf`	Searching, Sorting and Randomised Algorithms for Central Elements and Ideal Counting in Posets. FSTTCS Devdatt P. Dubhashi, Kurt Mehlhorn, Desh Ranjan, Christian Thiel
1992	—	`—`	Issues in NP-optimization and Approximation. Desh Ranjan
1992	—	`conf`	On Randomized Reductions to Sparse Sets. SCT Desh Ranjan, Pankaj Rohatgi
1992	B	`conf`	On the Complexity of Incremental Computation. MFCS Suresh Chari, Desh Ranjan, Pankaj Rohatgi
1992	J	`jnl`	Relativization: a revisionistic retrospective. Bull. EATCS Richard Chang, Suresh Chari, Desh Ranjan, Pankaj Rohatgi
1991	A*	`conf`	Improving Known Solutions is Hard. ICALP Desh Ranjan, Suresh Chari, Pankaj Rohatgi
1991	J	`jnl`	Space Bounded Computations: Review and New Separation Results. Theor. Comput. Sci. Desh Ranjan, Richard Chang, Juris Hartmanis
1990	J	`jnl`	On Unique Staisfiability and Randomized Reductions. Bull. EATCS Juris Hartmanis, Richard Chang, Desh Ranjan, Pankaj Rohatgi
1990	—	`conf`	Quantifiers and Approximation (Abstract). SCT Alessandro Panconesi, Desh Ranjan
1990	A*	`conf`	Quantifiers and Approximation (Extended Abstract) STOC Alessandro Panconesi, Desh Ranjan
1990	—	`conf`	Structural Complexity Theory: recent Surprises. SWAT Juris Hartmanis, Richard Chang, Desh Ranjan, Pankaj Rohatgi
1989	B	`conf`	Space Bounded Computations: Review And New Separation Results. MFCS Juris Hartmanis, Desh Ranjan