Derek Reiman

13 papers B 1Misc 1Journal 5Unranked 5
YearRankTypeTitle / Venue / Authors
2024 B conf
TRIBAL: Tree Inference of B Cell Clonal Lineages.
RECOMB
Leah L. Weber, Derek Reiman, Mrinmoy Saha Roddur, Yuanyuan Qi, Mohammed El-Kebir, Aly A. Khan
2021 — conf
Integrating microbiome and metabolome data for host disease prediction via deep neural networks.
BHI
Tina Khajeh, Derek Reiman, Ryan Morley, Yang Dai
2021 J jnl
Meta-Signer: Metagenomic Signature Identifier based onrank aggregation of features.
F1000Research
Derek Reiman, Ahmed Metwally, Jun Sun, Yang Dai
2021 J jnl
MiMeNet: Exploring microbiome-metabolome relationships using neural networks.
PLoS Comput. Biol.
Derek Reiman, Brian T. Layden, Yang Dai
2021 — ch.
Predicting Host Phenotype Based on Gut Microbiome Using a Convolutional Neural Network Approach.
Artificial Neural Networks, 3rd Edition
Derek Reiman, Ali M. Farhat, Yang Dai
2021 J jnl
Pseudocell Tracer - A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination.
PLoS Comput. Biol.
Derek Reiman, Godhev Kumar Manakkat Vijay, Heping Xu, Andrew Sonin, Dianyu Chen, Nathan Salomonis, Harinder Singh, Aly A. Khan
2020 J jnl
PopPhy-CNN: A Phylogenetic Tree Embedded Architecture for Convolutional Neural Networks to Predict Host Phenotype From Metagenomic Data.
IEEE J. Biomed. Health Informatics
Derek Reiman, Ahmed A. Metwally, Jun Sun, Yang Dai
2020 — conf
Using Conditional Generative Adversarial Networks to Boost the Performance of Machine Learning in Microbiome Datasets.
DeLTA
Derek Reiman, Yang Dai
2019 Misc conf
Integrating RNA expression and visual features for immune infiltrate prediction.
PSB
Derek Reiman, Lingdao Sha, Irvin Ho, Timothy Tan, Denise Lau, Aly A. Khan
2019 — conf
Using Autoencoders for Predicting Latent Microbiome Community Shifts Responding to Dietary Changes.
BIBM
Derek Reiman, Yang Dai
2019 — conf
Using Convolutional Neural Network to Study the Regulatory Relationship Between DNA Methylation and Gene Expression.
BIBM
Jingting Xu, Derek Reiman, Shang Gao, Yang Dai
2019 J jnl
Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks.
PLoS Comput. Biol.
Ahmed A. Metwally, Philip S. Yu, Derek Reiman, Yang Dai, Patricia W. Finn, David L. Perkins
2017 — conf
Using convolutional neural networks to explore the microbiome.
EMBC
Derek Reiman, Ahmed Metwally, Yang Dai