Derek Jones

21 papers A 1Journal 13Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
SurGBSA: Learning Representations From Molecular Dynamics Simulations.
CoRR
Derek Jones, Yue Yang, Felice C. Lightstone, Niema Moshiri, Jonathan E. Allen, Tajana Simunic Rosing
2023 J jnl
Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method.
J. Chem. Inf. Model.
Garrett A. Stevenson, Dan Kirshner, Brian J. Bennion, Yue Yang, Xiaohua Zhang, Adam T. Zemla, Marisa W. Torres, Aidan Epstein, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Sergio Ernesto Wong, Jonathan E. Allen, Felice C. Lightstone
2023 J jnl
HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations.
CoRR
Derek Jones, Jonathan E. Allen, Xiaohua Zhang, Behnam Khaleghi, Jaeyoung Kang, Weihong Xu, Niema Moshiri, Tajana Simunic Rosing
2022 — ch.
From Digital Divide to Digital Discovery: Re-thinking Online Learning and Interactions in Marginalized Communities.
Innovation Practices for Digital Transformation in the Global South
Lay-Wah Carolina Ching-Chiang, Juan Manuel Fernández-Cárdenas, Nicole Lotz, Noé Abraham González-Nieto, Mark Gaved, Derek Jones, Alejandra Díaz de León, Rafael Machado
2021 J jnl
Enabling rapid COVID-19 small molecule drug design through scalable deep learning of generative models.
Int. J. High Perform. Comput. Appl.
Sam Ade Jacobs, Tim Moon, Kevin McLoughlin, Derek Jones, David Hysom, Dong H. Ahn, John C. Gyllenhaal, Pythagoras Watson, Felice C. Lightstone, Jonathan E. Allen, Ian Karlin, Brian Van Essen
2021 J jnl
High-Throughput Virtual Screening of Small Molecule Inhibitors for SARS-CoV-2 Protein Targets with Deep Fusion Models.
CoRR
Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen
2021 A conf
High-throughput virtual screening of small molecule inhibitors for SARS-CoV-2 protein targets with deep fusion models.
SC
Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen
2021 J jnl
Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference.
J. Chem. Inf. Model.
Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, W. F. Drew Bennett, Daniel A. Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen
2020 J jnl
Binding Affinity Prediction by Pairwise Function Based on Neural Network.
J. Chem. Inf. Model.
Fangqiang Zhu, Xiaohua Zhang, Jonathan E. Allen, Derek Jones, Felice C. Lightstone
2020 J jnl
Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference.
CoRR
Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, William D. Bennett, Dan Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen
2020 J jnl
Predicting Small Molecule Transfer Free Energies by Combining Molecular Dynamics Simulations and Deep Learning.
J. Chem. Inf. Model.
W. F. Drew Bennett, Stewart He, Camille L. Bilodeau, Derek Jones, Delin Sun, Hyojin Kim, Jonathan E. Allen, Felice C. Lightstone, Helgi I. Ingólfsson
2019 — conf
Minigo: A Case Study in Reproducing Reinforcement Learning Research.
RML@ICLR
Brian Lee, Andrew Jackson, Tom Madams, Seth Troisi, Derek Jones
2018 — conf
Quantifying the association between white matter integrity changes and subconcussive head impact exposure from a single season of youth and high school football using 3D convolutional neural networks.
Computer-Aided Diagnosis
Behrouz Saghafi, Gowtham Murugesan, Elizabeth M. Davenport, Benjamin C. Wagner, Jillian Urban, Mireille Kelley, Derek Jones, Alexander Powers, Christopher T. Whitlow, Joel D. Stitzel, Joseph A. Maldjian, Albert Montillo
2018 — conf
Single season changes in resting state network power and the connectivity between regions distinguish head impact exposure level in high school and youth football players.
Computer-Aided Diagnosis
Gowtham Krishnan Murugesan, Behrouz Saghafi, Elizabeth M. Davenport, Benjamin C. Wagner, Jillian Urban-Hobson, Mireille Kelley, Derek Jones, Alex Powers, Christopher T. Whitlow, Joel D. Stitzel, Joseph A. Maldjian, Albert Montillo
2017 — conf
Changes in resting state MRI networks from a single season of football distinguishes controls, low, and high head impact exposure.
ISBI
Gowtham Murugesan, Afarin Famili, Elizabeth M. Davenport, Benjamin C. Wagner, Jillian Urban, Mireille Kelley, Derek Jones, Christopher T. Whitlow, Joel D. Stitzel, Joseph A. Maldjian, Albert Montillo
2015 J jnl
Editors' introduction.
J. Exp. Theor. Artif. Intell.
Derek Jones, Anthony F. Beavers
2014 J jnl
Philosophy in the Age of Information: A Symposium on Luciano Floridi's The Philosophy of Information.
Minds Mach.
Anthony F. Beavers, Derek Jones
2013 J jnl
Building Information Modelling Design Ecologies: A New Model?
Int. J. 3 D Inf. Model.
Derek Jones, Emma Dewberry
2013 — conf
The use of the Sensecam to explore daily functioning of older adults with chronic pain.
SenseCam
Gemma Wilson, Derek Jones, Patricia Schofield, Denis Martin
2012 J jnl
What do animat models model?
J. Exp. Theor. Artif. Intell.
Derek Jones
2004 — conf
A Closed-Form Method for Improving Inter-Subject Coherence in Diffusion Tensor Magnetic Resonance Imaging.
ISBI
Nicholas Lange, Derek Jones, Carlo Pierpaoli