Derek A. Ruths

13 papers B 2Misc 1Journal 8Unranked 2
YearRankTypeTitle / Venue / Authors
2009 J jnl
GS
Bioinform.
Troy A. Ruths, Derek A. Ruths, Luay Nakhleh
2008 J jnl
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.
BMC Bioinform.
Cuong Than, Derek A. Ruths, Luay Nakhleh
2008 J jnl
Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle.
BMC Syst. Biol.
Derek A. Ruths, Luay Nakhleh, Prahlad T. Ram
2008 J jnl
The Signaling Petri Net-Based Simulator: A Non-Parametric Strategy for Characterizing the Dynamics of Cell-Specific Signaling Networks.
PLoS Comput. Biol.
Derek A. Ruths, Melissa Muller, Jen-Te Tseng, Luay Nakhleh, Prahlad T. Ram
2007 J jnl
Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions.
J. Comput. Biol.
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nakhleh
2006 — conf
De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis.
Systems Biology and Computational Proteomics
Derek A. Ruths, Jen-Te Tseng, Luay Nakhleh, Prahlad T. Ram
2006 J jnl
Hypothesis Generation in Signaling Networks.
J. Comput. Biol.
Derek A. Ruths, Luay Nakhleh, M. Sriram Iyengar, Shrikanth A. G. Reddy, Prahlad T. Ram
2006 — conf
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer.
Comparative Genomics
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nakhleh
2006 B conf
RECOMP: A Parsimony-Based Method for Detecting Recombination.
APBC
Derek A. Ruths, Luay Nakhleh
2006 B conf
Techniques for Assessing Phylogenetic Branch Support: A Performance Study.
APBC
Derek A. Ruths, Luay Nakhleh
2005 Misc conf
RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer.
COCOON
Luay Nakhleh, Derek A. Ruths, Li-San Wang
2005 J jnl
Recombination and phylogeny: effects and detection.
Int. J. Bioinform. Res. Appl.
Derek A. Ruths, Luay Nakhleh
2000 J jnl
Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions.
Bioinform.
Derek A. Ruths, Edward S. Chen, Leland Ellis