Dennis R. Livesay

21 papers B 1C 3Journal 16Unranked 1
YearRankTypeTitle / Venue / Authors
2015 J jnl
A virtual pebble game to ensemble average graph rigidity.
Algorithms Mol. Biol.
Luis C. González, Hui Wang, Dennis R. Livesay, Donald J. Jacobs
2015 J jnl
Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments.
PLoS Comput. Biol.
Tong Li, Malgorzata B. Tracka, Shahid Uddin, Jose Casas-Finet, Donald J. Jacobs, Dennis R. Livesay
2013 B conf
A visual analytics approach to exploring protein flexibility subspaces.
PacificVis
Scott Barlowe, Jing Yang, Donald J. Jacobs, Dennis R. Livesay, Jamal Alsakran, Ye Zhao, Deeptak Verma, James Mottonen
2013 J jnl
Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity.
PLoS Comput. Biol.
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
2012 J jnl
Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged.
PLoS Comput. Biol.
Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay
2011 — conf
Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game.
BCB
Luis C. González, Dennis R. Livesay, Donald J. Jacobs
2011 J jnl
Topology Improves Phylogenetic Motif Functional Site Predictions.
IEEE ACM Trans. Comput. Biol. Bioinform.
K. C. Dukka Bahadur, Dennis R. Livesay
2011 J jnl
WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics.
Comput. Graph. Forum
Scott Barlowe, Yujie Liu, Jing Yang, Dennis R. Livesay, Donald J. Jacobs, James Mottonen, Deeptak Verma
2010 J jnl
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.
Nucleic Acids Res.
Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan
2008 J jnl
Conformational Entropy of an Ideal Cross-Linking Polymer Chain.
Entropy
Oleg K. Vorov, Dennis R. Livesay, Donald J. Jacobs
2008 J jnl
Improving position-specific predictions of protein functional sites using phylogenetic motifs.
Bioinform.
K. C. Dukka Bahadur, Dennis R. Livesay
2008 J jnl
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities.
BMC Bioinform.
Usman Roshan, Satish Chikkagoudar, Dennis R. Livesay
2007 J jnl
Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na
BMC Bioinform.
Dennis R. Livesay, Patrick D. Kidd, Sepehr Eskandari, Usman Roshan
2007 J jnl
How accurate and statistically robust are catalytic site predictions based on closeness centrality?
BMC Bioinform.
Eric Chea, Dennis R. Livesay
2007 C conf
Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks.
CIBCB
Swati Pande, Amar Raheja, Dennis R. Livesay
2007 J jnl
eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities.
Nucleic Acids Res.
Satish Chikkagoudar, Usman Roshan, Dennis R. Livesay
2006 C conf
Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees.
BIBE
Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar
2006 J jnl
Probalign: multiple sequence alignment using partition function posterior probabilities.
Bioinform.
Usman Roshan, Dennis R. Livesay
2005 C conf
Improved Phylogenetic Motif Detection Using Parsimony.
BIBE
Usman Roshan, Dennis R. Livesay, David La
2005 J jnl
MINER: software for phylogenetic motif identification.
Nucleic Acids Res.
David La, Dennis R. Livesay
2005 J jnl
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
BMC Bioinform.
David La, Dennis R. Livesay