Dennis Kostka

16 papers Journal 12Unranked 3
YearRankTypeTitle / Venue / Authors
2023 J jnl
An intrinsically interpretable neural network architecture for sequence-to-function learning.
Bioinform.
Ali Tugrul Balci, Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka, Maria Chikina
2023 J jnl
Vaeda computationally annotates doublets in single-cell RNA sequencing data.
Bioinform.
Hannah Schriever, Dennis Kostka
2023 J jnl
aenmd: annotating escape from nonsense-mediated decay for transcripts with protein-truncating variants.
Bioinform.
Jonathan Klonowski, Qianqian Liang, Zeynep H. Coban Akdemir, Cecilia Lo, Dennis Kostka
2022 J jnl
Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data.
Bioinform.
Weiguang Mao, Maziyar Baran Pouyan, Dennis Kostka, Maria Chikina
2020 J jnl
scds: computational annotation of doublets in single-cell RNA sequencing data.
Bioinform.
Abha S. Bais, Dennis Kostka
2019 J jnl
Large-scale inference of competing endogenous RNA networks with sparse partial correlation.
Bioinform.
Markus List, Azim Dehghani Amirabad, Dennis Kostka, Marcel H. Schulz
2018 J jnl
Random forest based similarity learning for single cell RNA sequencing data.
Bioinform.
Maziyar Baran Pouyan, Dennis Kostka
2014 J jnl
Integrating Diverse Datasets Improves Developmental Enhancer Prediction.
PLoS Comput. Biol.
Genevieve D. Erwin, Nir Oksenberg, Rebecca M. Truty, Dennis Kostka, Karl K. Murphy, Nadav Ahituv, Katherine S. Pollard, John A. Capra
2014 J jnl
Modeling DNA methylation dynamics with approaches from phylogenetics.
Bioinform.
John A. Capra, Dennis Kostka
2008 J jnl
Analyzing gene perturbation screens with nested effects models in R and bioconductor.
Bioinform.
Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz
2008 J jnl
Detecting hierarchical structure in molecular characteristics of disease using transitive approximations of directed graphs.
Bioinform.
Juby Jacob, Marcel Jentsch, Dennis Kostka, Stefan Bentink, Rainer Spang
2008 J jnl
Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures.
PLoS Comput. Biol.
Dennis Kostka, Rainer Spang
2007 — conf
A physical model for tiling array analysis.
ISMB/ECCB (Supplement of Bioinformatics)
Ho-Ryun Chung, Dennis Kostka, Martin Vingron
2007 — —
Methodology for exploring and communicating molecular characteristics of disease (Methodik zum Erkennen und zur Kommunikation molekularer Krankheitssignaturen)
Dennis Kostka
2007 — conf
Nested effects models for high-dimensional phenotyping screens.
ISMB/ECCB (Supplement of Bioinformatics)
Florian Markowetz, Dennis Kostka, Olga G. Troyanskaya, Rainer Spang
2004 — conf
Finding disease specific alterations in the co-expression of genes.
ISMB/ECCB (Supplement of Bioinformatics)
Dennis Kostka, Rainer Spang