Denis C. Bauer

30 papers C 1Misc 1Journal 21Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
Bioinformatic assessment of allergenicity, virulence, and secondary metabolites in Aspergillus species for industrial applications.
Comput. Biol. Chem.
Berenice Talamantes-Becerra, Mya Myintzu Hlaing, Natalie A. Twine, Laurence Wilson, Denis C. Bauer, Netsanet Shiferaw Terefe
2025 J jnl
AskBeacon - performing genomic data exchange and analytics with natural language.
Bioinform.
Anuradha Wickramarachchi, Shakila Tonni, Sonali Majumdar, Sarvnaz Karimi, Sulev Kõks, Brendan Hosking, Jordi Rambla, Natalie A. Twine, Yatish Jain, Denis C. Bauer
2025 J jnl
Democratising high performance computing for bioinformatics through serverless cloud computing: A case study on CRISPR-Cas9 guide RNA design with Crackling Cloud.
PLoS Comput. Biol.
Jacob Bradford, Divya Joy, Mattias Winsen, Nicholas Meurant, Mackenzie Wilkins, Laurence O. W. Wilson, Denis C. Bauer, Dimitri Perrin
2025 J jnl
Privacy-hardened and hallucination-resistant synthetic data generation with logic-solvers.
Bioinform.
Mark A. Burgess, Brendan Hosking, Roc Reguant, Anubhav Kaphle, Mitchell J. O'Brien, Letitia M. F. Sng, Yatish Jain, Denis C. Bauer
2024 J jnl
AskBeacon - Performing genomic data exchange and analytics with natural language.
CoRR
Anuradha Wickramarachchi, Shakila Tonni, Sonali Majumdar, Sarvnaz Karimi, Sulev Kõks, Brendan Hosking, Jordi Rambla, Natalie A. Twine, Yatish Jain, Denis C. Bauer
2024 J jnl
Privacy-hardened and hallucination-resistant synthetic data generation with logic-solvers.
CoRR
Mark A. Burgess, Brendan Hosking, Roc Reguant, Anubhav Kaphle, Mitchell J. O'Brien, Letitia M. F. Sng, Yatish Jain, Denis C. Bauer
2023 — conf
An Approach for Generating Realistic Australian Synthetic Healthcare Data.
MedInfo
Ibrahima Diouf, John Grimes, Mitchell J. O'Brien, Hamed Hassanzadeh, Donna Truran, Hoa Ngo, Parnesh Raniga, Michael Lawley, Denis C. Bauer, David P. Hansen, Sankalp Khanna, Roc Reguant
2023 — conf
Data Visualization of CRISPR-Cas9 Guide RNA Design Tools.
MedInfo
Yatish Jain, Fathima Afra Mohamed Izzath, Laurence O. W. Wilson, Denis C. Bauer
2023 — conf
PEPS: Polygenic Epistatic Phenotype Simulation.
MedInfo
Roc Reguant, Mitchell J. O'Brien, Arash Bayat, Brendan Hosking, Yatish Jain, Natalie A. Twine, Denis C. Bauer
2023 — conf
Prediction of Coronary Artery Disease Risk Using Genetic and Phenotypic Variables.
MedInfo
Letitia M. F. Sng, Reevanshi Sharma, Sam Bagot, Denis C. Bauer, Natalie A. Twine
2022 J jnl
Applying data technologies to combat AMR: current status, challenges, and opportunities on the way forward.
CoRR
Leonid Chindelevitch, Elita Jauneikaite, Nicole E. Wheeler, Kasim Allel, Bede Yaw Ansiri-Asafoakaa, Wireko A. Awuah, Denis C. Bauer, Stephan Beisken, Kara Fan, Gary Grant, Michael Graz, Yara Khalaf, Veranja Liyanapathirana, Carlos Montefusco-Pereira, Lawrence Mugisha, Atharv Naik, Sylvia Nanono, Anthony Nguyen, Timothy Rawson, Kessendri Reddy, Juliana M. Ruzante, Anneke Schmider, Roman Stocker, Leonhardt Unruh, Daniel Waruingi, Heather Graz, Maarten van Dongen
2021 J jnl
Domain-specific introduction to machine learning terminology, pitfalls and opportunities in CRISPR-based gene editing.
Briefings Bioinform.
Aidan R. O'Brien, Gaetan Burgio, Denis C. Bauer
2020 J jnl
A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping.
Briefings Bioinform.
Anita Sathyanarayanan, Rohit Gupta, Erik W. Thompson, Dale R. Nyholt, Denis C. Bauer, Shivashankar H. Nagaraj
2019 — ch.
Artificial Intelligence and Machine Learning in Bioinformatics.
Encyclopedia of Bioinformatics and Computational Biology (1)
Kaitao Lai, Natalie Twine, Aidan O'Brien, Yi Guo, Denis C. Bauer
2018 J jnl
Evaluation of computational programs to predict HLA genotypes from genomic sequencing data.
Briefings Bioinform.
Denis C. Bauer, Armella Zadoorian, Laurence O. W. Wilson, Melbourne Genomics Health Alliance, Natalie P. Thorne
2017 — conf
Breaking the Curse of Dimensionality for Machine Learning on Genomic Data.
BAI@IJCAI
Aidan O'Brien, Piotr Szul, Oscar Luo, Andrew George, Robert Dunne, Denis C. Bauer
2017 Misc conf
Interacting with Genomic Data: Clinician Requirements and Prototype Structure.
HIC
Dana Bradford, Shlomo Berkovsky, Melissa Martyn, Tim Bakkar, Martin Krahnert, Michelle Rodriguez, Denis C. Bauer, Derek Ireland, Clara Gaff
2014 J jnl
Blue: correcting sequencing errors using consensus and context.
Bioinform.
Paul Greenfield, Konsta Duesing, Alexie Papanicolaou, Denis C. Bauer
2014 J jnl
NGSANE: a lightweight production informatics framework for high-throughput data analysis.
Bioinform.
Fabian A. Buske, Hugh J. French, Martin A. Smith, Susan J. Clark, Denis C. Bauer
2013 J jnl
Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci.
Bioinform.
Fabian A. Buske, Denis C. Bauer, John S. Mattick, Timothy L. Bailey
2011 J jnl
Sorting the nuclear proteome.
Bioinform.
Denis C. Bauer, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao, Timothy L. Bailey, Graham Dellaire, Mikael Bodén
2010 J jnl
Assigning roles to DNA regulatory motifs using comparative genomics.
Bioinform.
Fabian A. Buske, Mikael Bodén, Denis C. Bauer, Timothy L. Bailey
2010 J jnl
Dual-functioning transcription factors in the developmental gene network of
BMC Bioinform.
Denis C. Bauer, Fabian A. Buske, Timothy L. Bailey
2010 J jnl
Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster.
Neurocomputing
Denis C. Bauer, Fabian A. Buske, Timothy L. Bailey, Mikael Bodén
2009 J jnl
Optimizing static thermodynamic models of transcriptional regulation.
Bioinform.
Denis C. Bauer, Timothy L. Bailey
2008 — conf
Predicting SUMOylation Sites.
PRIB
Denis C. Bauer, Fabian A. Buske, Mikael Bodén
2008 J jnl
STREAM: Static Thermodynamic REgulAtory Model of transcription.
Bioinform.
Denis C. Bauer, Timothy L. Bailey
2008 J jnl
Studying the functional conservation of cis-regulatory modules and their transcriptional output.
BMC Bioinform.
Denis C. Bauer, Timothy L. Bailey
2006 J jnl
STAR: predicting recombination sites from amino acid sequence.
BMC Bioinform.
Denis C. Bauer, Mikael Bodén, Ricarda Thier, Elizabeth M. J. Gillam
2005 C conf
Predicting Structural Disruption of Proteins Caused by Crossover (based on Amino Acid Sequence).
CIBCB
Denis C. Bauer, Mikael Bodén, Ricarda Thier, Zheng Yuan