Deepak Bandyopadhyay

14 papers A* 1B 1Journal 8Unranked 3
YearRankTypeTitle / Venue / Authors
2019 J jnl
Scaffold-Based Analytics: Enabling Hit-to-Lead Decisions by Visualizing Chemical Series Linked across Large Datasets.
J. Chem. Inf. Model.
Deepak Bandyopadhyay, Constantine Kreatsoulas, Pat G. Brady, Joseph Boyer, Zangdong He, Genaro Scavello, Tyler Peryea, Ajit Jadhav, Dac-Trung Nguyen, Rajarshi Guha
2013 — ch.
Stochastic Proximity Embedding: A Simple, Fast and Scalable Algorithm for Solving the Distance Geometry Problem.
Distance Geometry
Dimitris K. Agrafiotis, Deepak Bandyopadhyay, Eric Yang
2010 J jnl
Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs.
IEEE Trans. Inf. Technol. Biomed.
Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
2009 J jnl
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.
J. Comput. Aided Mol. Des.
Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
2009 J jnl
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.
J. Comput. Aided Mol. Des.
Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
2008 J jnl
A self-organizing algorithm for molecular alignment and pharmacophore development.
J. Comput. Chem.
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
2008 — conf
Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs.
BIBM
Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
2007 J jnl
Almost-Delaunay simplices: Robust neighbor relations for imprecise 3D points using CGAL.
Comput. Geom.
Deepak Bandyopadhyay, Jack Snoeyink
2007 J jnl
Radial Clustergrams: Visualizing the Aggregate Properties of Hierarchical Clusters.
J. Chem. Inf. Model.
Dimitris K. Agrafiotis, Deepak Bandyopadhyay, Michael Farnum
2005 J jnl
Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs.
J. Comput. Biol.
Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan F. Prins, Alexander Tropsha
2004 A* conf
Almost-Delaunay simplices: nearest neighbor relations for imprecise points.
SODA
Deepak Bandyopadhyay, Jack Snoeyink
2004 B conf
Mining protein family specific residue packing patterns from protein structure graphs.
RECOMB
Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha
2001 — conf
Dynamic Shader Lamps: Painting on Movable Objects.
ISAR
Deepak Bandyopadhyay, Ramesh Raskar, Henry Fuchs
2001 — conf
Shader Lamps: Animating Real Objects With Image-Based Illumination.
Rendering Techniques
Ramesh Raskar, Greg Welch, Kok-Lim Low, Deepak Bandyopadhyay