Declan G. Bates

72 papers B 2C 5Journal 24Unranked 41

Year	Rank	Type	Title / Venue / Authors
2024	—	`conf`	Comparison of closed loop control strategies for the activation of genetic switches. CDC Alexander P. S. Darlington, Ahmad A. Mannan, Declan G. Bates
2024	—	`conf`	Selection of control inputs for enhancing the long-term performance of synthetic gene circuits. CDC Daniel P. Byrom, Declan G. Bates, Alexander P. S. Darlington
2023	—	`conf`	Natural Host Feedback Simplifies the Design of Metabolic Switches. CDC Alexander P. S. Darlington, Ahmad A. Mannan, Declan G. Bates
2022	—	`conf`	A computational cardiopulmonary physiology simulator accurately predicts individual patient responses to changes in mechanical ventilator settings. EMBC Sonal Mistry, Bindi S. Brook, Sina Saffaran, Marc Chikhani, David M. Hannon, John G. Laffey, Tim E. Scott, Luigi Camporota, Jonathan G. Hardman, Declan G. Bates
2022	—	`conf`	Performance and robustness analysis of control strategies for ameliorating cellular host-circuit interactions. ECC Alexander P. S. Darlington, Declan G. Bates
2022	—	`conf`	Why Reduced Inspiratory Pressure Could Determine Success of Non-Invasive Ventilation in Acute Hypoxic Respiratory Failure. EMBC Liam Weaver, Sina Saffaran, Marc Chikhani, John G. Laffey, Timothy E. Scott, Luigi Camporota, Jonathan G. Hardman, Declan G. Bates
2022	J	`jnl`	gcFront: a tool for determining a Pareto front of growth-coupled cell factory designs. Bioinform. Laurence Legon, Christophe Corre, Declan G. Bates, Ahmad A. Mannan
2021	—	`conf`	Identification of an optimal CPR chest compression protocol. EMBC Clara Daudre-Vignier, Marianna Laviola, Anup Das, Declan G. Bates, Jonathan G. Hardman
2020	J	`jnl`	A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits. PLoS Comput. Biol. Jack E. Bowyer, Chloe Ding, Benjamin H. Weinberg, Wilson W. Wong, Declan G. Bates
2020	J	`jnl`	A simplified modelling framework facilitates more complex representations of plant circadian clocks. PLoS Comput. Biol. Mathias Foo, Declan G. Bates, Ozgur E. Akman
2020	J	`jnl`	On the stability of nucleic acid feedback control systems. Autom. Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates
2019	—	`conf`	Combining transcriptional and translational resource allocation controllers for synthetic circuits. CDC Alexander P. S. Darlington, Declan G. Bates
2019	—	`conf`	Efficacy of continuous positive airway pressure in casualties suffering from primary blast lung injury: A modeling study. EMBC Timothy E. Scott, Mainul Haque, Anup Das, Ian Cliff, Declan G. Bates, Jonathan G. Hardman
2019	—	`conf`	High oxygen fraction during airway opening is key to effective airway rescue in obese subjects. EMBC Marianna Laviola, Christian Niklas, Husam Alahmadi, Anup Das, Declan G. Bates, Jonathan G. Hardman
2019	J	`jnl`	Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation. IEEE ACM Trans. Comput. Biol. Bioinform. Mathias Foo, Jongrae Kim, Declan G. Bates
2019	J	`jnl`	PID and State Feedback Controllers Using DNA Strand Displacement Reactions. IEEE Control. Syst. Lett. Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates
2019	J	`jnl`	Robustness Analysis of a Synthetic Translational Resource Allocation Controller. IEEE Control. Syst. Lett. Alexander P. S. Darlington, Jongrae Kim, Declan G. Bates
2018	—	`conf`	On the design of integral translational resource allocation controllers for synthetic cellular circuitry. CDC Alexander P. S. Darlington, Declan G. Bates
2018	J	`jnl`	On the stability of nucleic acid feedback controllers. CoRR Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates
2018	—	`conf`	Uncertainty Modelling and Stability Robustness Analysis of Nucleic Acid-Based Feedback Control Systems. CDC Nuno M. G. Paulino, Mathie Foo, Jongmin Kim, Declan G. Bates
2017	J	`jnl`	Design of an embedded inverse-feedforward biomolecular tracking controller for enzymatic reaction processes. Comput. Chem. Eng. Mathias Foo, Jongrae Kim, Rucha Sawlekar, Declan G. Bates
2017	—	`conf`	Development and validation of a computational simulator for pediatric acute respiratory distress syndrome patients. EMBC Sina Saffaran, Anup Das, Jonathan G. Hardman, Nadir Yehya, Declan G. Bates
2017	—	`conf`	Investigating the effect of cardiac oscillations and deadspace gas mixing during apnea using computer simulation. EMBC Marianna Laviola, Anup Das, Marc Chikhani, Declan G. Bates, Jonathan G. Hardman
2017	—	`conf`	System identification of gene regulatory networks for perturbation mitigation via feedback control. ICNSC Mathias Foo, Declan G. Bates, Jongrae Kim
2016	—	`conf`	Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions. EMBC Mathias Foo, Rucha Sawlekar, Vishwesh V. Kulkarni, Declan G. Bates
2016	—	`conf`	Biomolecular implementation of nonlinear system theoretic operators. ECC Mathias Foo, Rucha Sawlekar, Jongmin Kim, Declan G. Bates, Guy-Bart Stan, Vishwesh V. Kulkarni
2016	—	`conf`	Creating virtual ARDS patients. EMBC Anup Das, Mainul Haque, Marc Chikhani, Wenfei Wang, Jonathan G. Hardman, Declan G. Bates
2016	—	`conf`	Development and experimental validation of a mechanistic model of a recombinase-based temporal logic gate. BioCAS Jack E. Bowyer, Victoria Hsiao, Declan G. Bates
2016	—	`conf`	Host-aware modelling of a synthetic genetic oscillator. EMBC Alexander Darlington, Declan G. Bates
2016	J	`jnl`	Mechanistic Modeling of a Rewritable Recombinase Addressable Data Module. IEEE Trans. Biomed. Circuits Syst. Jack E. Bowyer, Jia Zhao, Pakpoom Subsoontorn, Wilson Wong, Susan Rosser, Declan G. Bates
2016	—	`conf`	Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties. BioCAS Rucha Sawlekar, Mathias Foo, Declan G. Bates
2015	—	`conf`	Biomolecular implementation of a quasi sliding mode feedback controller based on DNA strand displacement reactions. EMBC Rucha Sawlekar, Francesco Montefusco, Vishwesh V. Kulkarni, Declan G. Bates
2015	—	`conf`	Development and experimental validation of a mechanistic model of in vitro DNA recombination. EMBC Jack E. Bowyer, Jia Zhao, Susan Rosser, Sean Colloms, Declan G. Bates
2015	—	`conf`	Development of an integrated model of cardiovascular and pulmonary physiology for the evaluation of mechanical ventilation strategies. EMBC Anup Das, Mainul Haque, Marc Chikhani, Wenfei Wang, Tayyba Ali, Oana Cole, Jonathan G. Hardman, Declan G. Bates
2015	—	`conf`	Retroactivity analysis of a chemical reaction network module for the subtraction of molecular fluxes. EMBC Mariaconcetta Bilotta, Carlo Cosentino, Declan G. Bates, Luca Salerno, Francesco Amato
2013	J	`jnl`	Optimization of Mechanical Ventilator Settings for Pulmonary Disease States. IEEE Trans. Biomed. Eng. Anup Das, Prathyush P. Menon, Jonathan G. Hardman, Declan G. Bates
2013	J	`jnl`	Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics. BMC Syst. Biol. Luca Salerno, Carlo Cosentino, Alessio Merola, Declan G. Bates, Francesco Amato
2012	—	`conf`	On the role of ultrasensitivity in biomolecular control systems. CDC Francesco Montefusco, Arno Steinacher, Ozgur E. Akman, Declan G. Bates, Orkun S. Soyer
2012	—	`conf`	Robust Safety Margin Assessment and Constrained Worst-Case Analysis of a Launcher Vehicle. ROCOND Atul Krishna Kamath, Prathyush P. Menon, Martine Ganet-Schoeller, Guillaume Maurice, Samir Bennani, Declan G. Bates
2012	J	`jnl`	Structural Bistability of the GAL Regulatory Network and Characterization of its Domains of Attraction. J. Comput. Biol. Carlo Cosentino, Luca Salerno, Antonio Passanti, Alessio Merola, Declan G. Bates, Francesco Amato
2012	—	`conf`	Worst Case Analysis of a Launcher Vehicle Using Surrogate Models. ROCOND Atul Krishna Kamath, Prathyush P. Menon, Martine Ganet-Schoeller, Guillaume Maurice, Samir Bennani, Declan G. Bates
2011	J	`jnl`	Computational modelling elucidates the mechanism of ciliary regulation in health and disease. BMC Syst. Biol. Nikolay V. Kotov, Declan G. Bates, Antonina N. Gizatullina, Bulat Gilaziev, Rustem N. Khairullin, Michael Z. Q. Chen, Ignat Drozdov, Yoshinori Umezawa, Christian Hundhausen, Alexey Aleksandrov, Xing-Gang Yan, Sarah K. Spurgeon, C. Mark Smales, Najl V. Valeyev
2011	—	`conf`	LFT-free μ-analysis of LTI/LPTV systems. CACSD Yun-Bo Zhao, Jongrae Kim, Declan G. Bates
2011	—	`conf`	Reverse-engineering biological interaction networks from noisy data using Regularized Least Squares and Instrumental Variables. CDC/ECC Francesco Montefusco, Carlo Cosentino, Francesco Amato, Declan G. Bates
2008	C	`conf`	Development and validation of an aero-engine simulation model for advanced controller design. ACC Sonny Martin, Iain Wallace, Declan G. Bates
2008	J	`jnl`	Elucidating the mechanisms of cooperative calcium-calmodulin interactions: a structural systems biology approach. BMC Syst. Biol. Najl V. Valeyev, Declan G. Bates, Pat Heslop-Harrison, Ian Postlethwaite, Nikolay V. Kotov
2008	J	`jnl`	Evaluation of Stochastic Effects on Biomolecular Networks Using the Generalized Nyquist Stability Criterion. IEEE Trans. Autom. Control. Jongrae Kim, Declan G. Bates, Ian Postlethwaite
2008	J	`jnl`	Linear time-varying models can reveal non-linear interactions of biomolecular regulatory networks using multiple time-series data. Bioinform. Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Pat Heslop-Harrison, Kwang-Hyun Cho
2007	J	`jnl`	A symbolic matrix decomposition algorithm for reduced order linear fractional transformation modelling. Autom. Andrés Marcos, Declan G. Bates, Ian Postlethwaite
2007	B	`conf`	Deterministic versus evolutionary optimisation methods for nonlinear robustness analysis of flight control laws. IEEE Congress on Evolutionary Computation Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite
2007	J	`jnl`	Least-squares methods for identifying biochemical regulatory networks from noisy measurements. BMC Bioinform. Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Pat Heslop-Harrison, Kwang-Hyun Cho
2007	C	`conf`	Linear vs. Nonlinear Robustness Analysis: A Case Study. CCA Sajjad Fekri, Declan G. Bates, Ian Postlethwaite
2007	J	`jnl`	Mathematical modelling of multi-site protein-ligand interactions. BMC Syst. Biol. Najl V. Valeyev, Nikolai V. Kotov, Ian Postlethwaite, Declan G. Bates
2007	B	`conf`	On the robustness analysis of nonlinear systems subject to time-invariant and/or time-varying uncertainty. IEEE Congress on Evolutionary Computation Declan G. Bates, Sajjad Fekri, Prathyush P. Menon, Ian Postlethwaite
2007	J	`jnl`	Stochastic Noise and Synchronisation during PLoS Comput. Biol. Jongrae Kim, Pat Heslop-Harrison, Ian Postlethwaite, Declan G. Bates
2006	C	`conf`	A deterministic hybrid optimisation algorithm for nonlinear flight control systems analysis. ACC Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite
2006	J	`jnl`	Clearance of Nonlinear Flight Control Laws Using Hybrid Evolutionary Optimization. IEEE Trans. Evol. Comput. Prathyush P. Menon, Jongrae Kim, Declan G. Bates, Ian Postlethwaite
2006	—	`conf`	General Anti-windup synthesis for input constrained nonlinear systems controlled using nonlinear dynamic inversion. CDC Prathyush P. Menon, Guido Herrmann, Matthew C. Turner, Declan G. Bates, Ian Postlethwaite
2006	J	`jnl`	Nonlinear robust performance analysis using complex-step gradient approximation. Autom. Jongrae Kim, Declan G. Bates, Ian Postlethwaite
2006	J	`jnl`	Robustness analysis of linear periodic time-varying systems subject to structured uncertainty. Syst. Control. Lett. Jongrae Kim, Declan G. Bates, Ian Postlethwaite
2005	—	`conf`	Control oriented uncertainty modelling using μ sensitivities and skewed μ analysis tools. CDC/ECC Andrés Marcos, Declan G. Bates, Ian Postlethwaite
2005	—	`conf`	Hybrid Evolutionary Optimisation Methods for the Clearance of Nonlinear Flight Control Laws. CDC/ECC Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite
2005	—	`conf`	Nonlinear Robust Performance Analysis using Gradient-Based Optimisation - An Aeroelastic Case-Study. CDC/ECC Jongrae Kim, Declan G. Bates, Ian Postlethwaite
2005	—	`conf`	Robustness Analysis of Biochemical Networks using μ-Analysis and Hybrid Optimisation. CDC/ECC Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Lan Ma, Pablo A. Iglesias
2004	C	`conf`	μ-Tools for the clearance of flight control laws. ACC Declan G. Bates, Thomas Mannchen, Ridwan Kureemun, Ian Postlethwaite
2003	—	`conf`	Clearance of the VAAC Harrier CL002 flight control law using μ-analysis techniques. ECC Declan G. Bates, Ridwan Kureemun, Thomas Mannchen
2003	—	`conf`	Improved computation of mixed μ bounds for flight control law analysis. ECC Thomas Mannchen, Declan G. Bates
2002	C	`conf`	Scheduling of a partitioned IFPC design for a VSTOL aircraft. ACC Nabil Aouf, Declan G. Bates
2001	—	`conf`	A conditioning strategy for performance improvement of an integrated flight and propulsion control system for a V/STOL aircraft. ECC Matthew C. Turner, Declan G. Bates, Ian Postlethwaite
2001	—	`conf`	H∞, optimisation for L1 performance objectives. ECC Declan G. Bates
2001	—	`conf`	New algorithms for upper and lower bounds on the mixed/real structured singular value. ECC Martin J. Hayes, Declan G. Bates, Anthony M. Holohan
2001	—	`conf`	Robustness analysis of integrated flight and propulsion control systems for V/STOL aircraft. ECC S. L. Gatley, Declan G. Bates, M. J. Hayes, Ian Postlethwaite