Debswapna Bhattacharya

24 papers A* 1Journal 17Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
To pack or not to pack: revisiting protein side-chain packing in the post-AlphaFold era.
Briefings Bioinform.
Sriniketh Vangaru, Debswapna Bhattacharya
2024 J jnl
Sifting through the Noise: A Survey of Diffusion Probabilistic Models and Their Applications to Biomolecules.
CoRR
Trevor Norton, Debswapna Bhattacharya
2024 J jnl
lociPARSE: A Locality-aware Invariant Point Attention Model for Scoring RNA 3D Structures.
J. Chem. Inf. Model.
Sumit Tarafder, Debswapna Bhattacharya
2023 J jnl
E(3) equivariant graph neural networks for robust and accurate protein-protein interaction site prediction.
PLoS Comput. Biol.
Rahmatullah Roche, Bernard Moussad, Md Hossain Shuvo, Debswapna Bhattacharya
2022 J jnl
Guest Editorial for Selected Papers From BIOKDD 2021.
IEEE ACM Trans. Comput. Biol. Bioinform.
Da Yan, Zhaohui S. Qin, Debswapna Bhattacharya, Jake Y. Chen
2021 A* conf
20th International Workshop on Data Mining in Bioinformatics (BIOKDD 2021).
KDD
Da Yan, Steve Qin, Debswapna Bhattacharya, Jake Y. Chen, Mohammed J. Zaki
2021 J jnl
DeepRefiner: high-accuracy protein structure refinement by deep network calibration.
Nucleic Acids Res.
Md Hossain Shuvo, Muhammad Gulfam, Debswapna Bhattacharya
2021 — conf
Hybridized distance- and contact- based hierarchical protein structure modeling using DConStruct.
BCB
Rahmatullah Roche, Sutanu Bhattacharya, Debswapna Bhattacharya
2021 J jnl
Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins.
PLoS Comput. Biol.
Rahmatullah Roche, Sutanu Bhattacharya, Debswapna Bhattacharya
2020 J jnl
QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks.
Bioinform.
Md Hossain Shuvo, Sutanu Bhattacharya, Debswapna Bhattacharya
2019 — conf
Contact-assisted Protein Threading: An Evolving New Direction.
BCB
Sutanu Bhattacharya, Debswapna Bhattacharya
2019 — conf
How Effective is Contact-assisted Protein Threading?
BCB
Sutanu Bhattacharya, Debswapna Bhattacharya
2019 J jnl
refineD: improved protein structure refinement using machine learning based restrained relaxation.
Bioinform.
Debswapna Bhattacharya
2018 — conf
clustQ: Efficient Protein Decoy Clustering Using Superposition-free Weighted Internal Distance Comparisons.
BCB
Rahul Alapati, Debswapna Bhattacharya
2017 J jnl
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques.
Bioinform.
Renzhi Cao, Badri Adhikari, Debswapna Bhattacharya, Miao Sun, Jie Hou, Jianlin Cheng
2016 J jnl
3Drefine: an interactive web server for efficient protein structure refinement.
Nucleic Acids Res.
Debswapna Bhattacharya, Jackson Nowotny, Renzhi Cao, Jianlin Cheng
2016 J jnl
ConEVA: a toolbox for comprehensive assessment of protein contacts.
BMC Bioinform.
Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
2016 J jnl
DeepQA: Improving the estimation of single protein model quality with deep belief networks.
CoRR
Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
2016 J jnl
DeepQA: improving the estimation of single protein model quality with deep belief networks.
BMC Bioinform.
Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
2016 J jnl
FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling.
Bioinform.
Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
2016 J jnl
UniCon3D:
Bioinform.
Debswapna Bhattacharya, Renzhi Cao, Jianlin Cheng
2015 J jnl
Large-scale model quality assessment for improving protein tertiary structure prediction.
Bioinform.
Renzhi Cao, Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
2013 — conf
Automated protein structure refinement using i3Drefine software and its assessment in CASP10.
BCB
Debswapna Bhattacharya, Jianlin Cheng
2013 — conf
Protein Structure Refinement by Iterative Fragment Exchange.
BCB
Debswapna Bhattacharya, Jianlin Cheng