Davy Weissenbacher

50 papers A* 1A 1B 2C 1Misc 2Journal 21Unranked 16

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Automatic genetic phenotype normalization from dysmorphology physical examinations: an overview of the BioCreative VIII - Task 3 competition. Database J. Biol. Databases Curation Davy Weissenbacher, Xinwei Zhao, Jessica R. C. Priestley, Katherine M. Szigety, Sarah F. Schmidt, Karen O'Connor, Ekin Soysal, Kirk Roberts, Jiewei Qi, Ling Luo, Zhihao Yang, Hongfei Lin, Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang, Areej Alhassan, Viktor Schlegel, Monira Aloud, Riza Batista-Navarro, Goran Nenadic, Ying-Jia Lin, Zhi-Quan Feng, Hung-Yu Kao, Ian M. Campbell, Graciela Gonzalez-Hernandez
2025	—	`conf`	Probing Large Language Model Hidden States for Adverse Drug Reaction Knowledge. AIME (1) Jacob S. Berkowitz, Davy Weissenbacher, Apoorva Srinivasan, Nadine A. Friedrich, Jose Miguel Acitores Cortina, Sophia Kivelson, Graciela Gonzalez-Hernandez, Nicholas P. Tatonetti
2024	A*	`conf`	Automatic sentence segmentation of clinical record narratives in real-world data. EMNLP Dongfang Xu, Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Graciela Gonzalez-Hernandez
2024	J	`jnl`	Detecting goals of care conversations in clinical notes with active learning. J. Biomed. Informatics Davy Weissenbacher, Katherine R. Courtright, Siddharth Rawal, Andrew Crane-Droesch, Karen O'Connor, Nicholas Kuhl, Corinne Merlino, Anessa Foxwell, Lindsay Haines, Joseph C. Puhl, Graciela Gonzalez-Hernandez
2023	J	`jnl`	Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
2022	—	`conf`	Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022. SMM4H@COLING Davy Weissenbacher, Juan M. Banda, Vera Davydova, Darryl Estrada-Zavala, Luis Gascó Sánchez, Yao Ge, Yuting Guo, Ari Z. Klein, Martin Krallinger, Mathias Leddin, Arjun Magge, Raul Rodriguez-Esteban, Abeed Sarker, Ana Lucía Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez
2022	—	`ed.`	Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, Workshop & Shared Task, SMM4H@COLING 2022, Gyeongju, Republic of Korea, October 12 - 17, 2022. SMM4H@COLING Graciela Gonzalez-Hernandez, Davy Weissenbacher
2021	J	`jnl`	Active neural networks to detect mentions of changes to medication treatment in social media. J. Am. Medical Informatics Assoc. Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez
2021	B	`conf`	Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines. AIME Davy Weissenbacher, Siddharth Rawal, Arjun Magge, Graciela Gonzalez-Hernandez
2021	J	`jnl`	DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter. J. Am. Medical Informatics Assoc. Arjun Magge, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova, Anne Dirkson, Suzan Verberne, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2021	—	`conf`	Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021. SMM4H@NAACL-HLT Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
2021	—	`ed.`	Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, SMM4H@NAACL-HLT 2021, Mexico City, Mexico, June 10, 2021 SMM4H@NAACL-HLT Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré-Maduell, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
2020	J	`jnl`	GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinform. Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch
2020	—	`conf`	Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020. SMM4H@COLING Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2020	—	`ed.`	Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task, SMM4H@COLING 2020, Barcelona, Spain (Online), December 12, 2020 SMM4H@COLING Graciela Gonzalez-Hernandez, Ari Z. Klein, Ivan Flores, Davy Weissenbacher, Arjun Magge, Karen O'Connor, Abeed Sarker, Anne-Lyse Minard, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova
2019	Misc	`conf`	Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. PSB Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
2019	J	`jnl`	Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets. CoRR Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge Ranganatha, Graciela Gonzalez-Hernandez
2019	J	`jnl`	Deep neural networks ensemble for detecting medication mentions in tweets. J. Am. Medical Informatics Assoc. Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez
2019	—	`conf`	Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019. SMM4H@ACL Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez
2019	—	`ed.`	Proceedings of the Fourth Social Media Mining for Health Application Workshop & Shared Task, SMM4H@ACL 2019, Florence, Italy, August 2, 2019 SMM4H@ACL Davy Weissenbacher, Graciela Gonzalez-Hernandez
2019	—	`conf`	SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. SemEval@NAACL-HLT Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez
2019	Misc	`conf`	Text Mining and Machine Learning for Precision Medicine. PSB Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
2019	J	`jnl`	Towards scaling Twitter for digital epidemiology of birth defects. npj Digit. Medicine Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2018	J	`jnl`	Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research. CoRR Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2018	—	`conf`	Dealing with Medication Non-Adherence Expressions in Twitter. SMM4H@EMNLP Takeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez
2018	J	`jnl`	Deep neural networks and distant supervision for geographic location mention extraction. Bioinform. Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
2018	J	`jnl`	GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. Bioinform. Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
2018	—	`conf`	Overview of the Third Social Media Mining for Health (SMM4H) Shared Tasks at EMNLP 2018. SMM4H@EMNLP Davy Weissenbacher, Abeed Sarker, Michael J. Paul, Graciela Gonzalez-Hernandez
2018	—	`ed.`	Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task, SMM4H@EMNLP 2018, Brussels, Belgium, October 31, 2018 SMM4H@EMNLP Graciela Gonzalez-Hernandez, Davy Weissenbacher, Abeed Sarker, Michael J. Paul
2018	J	`jnl`	Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter. J. Biomed. Informatics Ari Z. Klein, Abeed Sarker, Haitao Cai, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2017	J	`jnl`	Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. Database J. Biol. Databases Curation Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch
2016	J	`jnl`	A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. J. Am. Medical Informatics Assoc. Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez
2016	—	`conf`	Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia. HLT-NAACL Davy Weissenbacher, Travis A. Johnson, Laura Wojtulewicz, Amylou Dueck, Dona Locke, Richard J. Caselli, Graciela Gonzalez
2015	—	`conf`	DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter. SemEval@NAACL-HLT Abeed Sarker, Azadeh Nikfarjam, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2015	J	`jnl`	Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinform. Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez
2015	C	`conf`	Tree-Structured Named Entities Extraction from Competing Speech Transcriptions. NLDB Davy Weissenbacher, Christian Raymond
2014	—	`conf`	Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses. BioNLP@ACL Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez
2013	J	`jnl`	Which Factors Contribute to Resolving Coreference Chains with Bayesian Networks?. Int. J. Comput. Linguistics Appl. Davy Weissenbacher, Yutaka Sasaki
2011	J	`jnl`	Understand the effects of erroneous annotations produced by NLP pipelines, a case study on the pronominal anaphora resolution. Trait. Autom. des Langues Davy Weissenbacher, Adeline Nazarenko
2009	—	`conf`	ASSIST : un moteur de recherche spécialisé pour l'analyse des cadres d'expériences. TALN (Demonstrations) Davy Weissenbacher, Elisa Pieri, Sophia Ananiadou, Brian Rea, Farida Vis, Yuwei Lin, Rob Procter, Peter Halfpenny
2008	—	`—`	Influence des annotations imparfaites sur les systèmes de Traitement Automatique des Langues, un cadre applicatif: la résolution de l'anaphore pronominale. (Effects of imperfect annotations on Natural Language Processing systems, an applicative case study: the pronominal anaphora resolution). Davy Weissenbacher
2007	—	`conf`	Identifier les pronoms anaphoriques et trouver leurs antécédents : l'intérêt de la classification bayésienne. TALN (Articles longs) Davy Weissenbacher, Adeline Nazarenko
2007	J	`jnl`	Les réseaux bayésiens : un formalisme adapté au traitement automatique des langues ? Rev. d'Intelligence Artif. Davy Weissenbacher
2006	A	`conf`	Bayesian Network, a Model for NLP? EACL Davy Weissenbacher
2006	J	`jnl`	Event-based Information Extraction for the biomedical domain: the Caderige project CoRR Érick Alphonse, Sophie Aubin, Philippe Bessières, Gilles Bisson, Thierry Hamon, Sandrine Lagarrigue, Adeline Nazarenko, Alain-Pierre Manine, Claire Nedellec, Mohamed Ould Abdel Vetah, Thierry Poibeau, Davy Weissenbacher
2006	J	`jnl`	The ALVIS Format for Linguistically Annotated Documents CoRR Adeline Nazarenko, Érick Alphonse, Julien Derivière, Thierry Hamon, Guillaume Vauvert, Davy Weissenbacher
2006	B	`conf`	The ALVIS Format for Linguistically Annotated Documents. LREC Adeline Nazarenko, Érick Alphonse, Julien Derivière, Thierry Hamon, Guillaume Vauvert, Davy Weissenbacher
2006	—	`conf`	Une infrastructure pour l'annotation linguistique de documents issus du web : le projet ALVIS. AAFD Sophie Aubin, Julien Derivière, Thierry Hamon, Adeline Nazarenko, Thierry Poibeau, Davy Weissenbacher
2004	—	`conf`	Event-Based Information Extraction for the Biomedical Domain: the Caderige Project. NLPBA/BioNLP Érick Alphonse, Sophie Aubin, Philippe Bessières, Gilles Bisson, Thierry Hamon, Sandrine Lagarrigue, Adeline Nazarenko, Alain-Pierre Manine, Claire Nédellec, Mohamed Ould Abdel Vetah, Thierry Poibeau, Davy Weissenbacher
2004	—	`conf`	La relation de synonymie en génomique. RECITAL Davy Weissenbacher