Davis J. McCarthy

14 papers A* 1Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
SpatialRNA: a Python package for easy application of Graph Neural Network models on single-molecule spatial transcriptomics dataset.
Bioinform.
Ruqian Lyu, Annika Vannan, Jonathan A. Kropski, Nicholas E. Banovich, Davis J. McCarthy
2024 J jnl
BRAIxDet: Learning to detect malignant breast lesion with incomplete annotations.
Medical Image Anal.
Yuanhong Chen, Yuyuan Liu, Chong Wang, Michael Elliott, Chun Fung Kwok, Carlos A. Peña-Solórzano, Yu Tian, Fengbei Liu, Helen Frazer, Davis J. McCarthy, Gustavo Carneiro
2023 J jnl
BRAIxDet: Learning to Detect Malignant Breast Lesion with Incomplete Annotations.
CoRR
Yuanhong Chen, Yuyuan Liu, Chong Wang, Michael Elliott, Chun Fung Kwok, Carlos A. Peña-Solórzano, Yu Tian, Fengbei Liu, Helen Frazer, Davis J. McCarthy, Gustavo Carneiro
2023 A* conf
Learning Support and Trivial Prototypes for Interpretable Image Classification.
ICCV
Chong Wang, Yuyuan Liu, Yuanhong Chen, Fengbei Liu, Yu Tian, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro
2023 J jnl
Learning Support and Trivial Prototypes for Interpretable Image Classification.
CoRR
Chong Wang, Yuyuan Liu, Yuanhong Chen, Fengbei Liu, Yu Tian, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro
2023 J jnl
Technical outlier detection via convolutional variational autoencoder for the ADMANI breast mammogram dataset.
CoRR
Hui Li, Carlos A. Peña-Solórzano, Susan Wei, Davis J. McCarthy
2022 — conf
Knowledge Distillation to Ensemble Global and Interpretable Prototype-Based Mammogram Classification Models.
MICCAI (3)
Chong Wang, Yuanhong Chen, Yuyuan Liu, Yu Tian, Fengbei Liu, Davis J. McCarthy, Michael Elliott, Helen Frazer, Gustavo Carneiro
2022 J jnl
Knowledge Distillation to Ensemble Global and Interpretable Prototype-Based Mammogram Classification Models.
CoRR
Chong Wang, Yuanhong Chen, Yuyuan Liu, Yu Tian, Fengbei Liu, Davis J. McCarthy, Michael Elliott, Helen Frazer, Gustavo Carneiro
2022 — conf
Multi-view Local Co-occurrence and Global Consistency Learning Improve Mammogram Classification Generalisation.
MICCAI (3)
Yuanhong Chen, Hu Wang, Chong Wang, Yu Tian, Fengbei Liu, Yuyuan Liu, Michael Elliott, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro
2022 J jnl
Multi-view Local Co-occurrence and Global Consistency Learning Improve Mammogram Classification Generalisation.
CoRR
Yuanhong Chen, Hu Wang, Chong Wang, Yu Tian, Fengbei Liu, Michael Elliott, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro
2022 J jnl
Trade-off between conservation of biological variation and batch effect removal in deep generative modeling for single-cell transcriptomics.
BMC Bioinform.
Hui Li, Davis J. McCarthy, Heejung Shim, Susan Wei
2019 J jnl
12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr.
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
2017 J jnl
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.
Bioinform.
Davis J. McCarthy, Kieran R. Campbell, Aaron T. L. Lun, Quin F. Wills
2009 J jnl
Testing significance relative to a fold-change threshold is a TREAT.
Bioinform.
Davis J. McCarthy, Gordon K. Smyth