Davide Risso

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2024 J jnl
Improving replicability in single-cell RNA-Seq cell type discovery with Dune.
BMC Bioinform.
Hector Roux de Bézieux, Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca Chance, Davide Risso, Jesse A. Gillis, John Ngai, Elizabeth Purdom, Sandrine Dudoit
2023 J jnl
Curated single cell multimodal landmark datasets for R/Bioconductor.
PLoS Comput. Biol.
Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron
2023 J jnl
benchdamic: benchmarking of differential abundance methods for microbiome data.
Bioinform.
Matteo Calgaro, Chiara Romualdi, Davide Risso, Nicola Vitulo
2022 J jnl
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.
Bioinform.
Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso
2021 J jnl
Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles.
Bioinform.
Davide Risso, Stefano Maria Pagnotta
2021 J jnl
PsiNorm: a scalable normalization for single-cell RNA-seq data.
Bioinform.
Matteo Borella, Graziano Martello, Davide Risso, Chiara Romualdi
2021 J jnl
mbkmeans: Fast clustering for single cell data using mini-batch k-means.
PLoS Comput. Biol.
Stephanie C. Hicks, Ruoxi Liu, Yuwei Ni, Elizabeth Purdom, Davide Risso
2018 J jnl
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.
PLoS Comput. Biol.
Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
2011 J jnl
A novel approach to the clustering of microarray data via nonparametric density estimation.
BMC Bioinform.
Riccardo De Bin, Davide Risso
2011 J jnl
GC-Content Normalization for RNA-Seq Data.
BMC Bioinform.
Davide Risso, Katja Schwartz, Gavin Sherlock, Sandrine Dudoit
2011 J jnl
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.
BMC Bioinform.
Paolo G. V. Martini, Davide Risso, Gabriele Sales, Chiara Romualdi, Gerolamo Lanfranchi, Stefano Cagnin
2009 J jnl
A comparison on effects of normalisations in the detection of differentially expressed genes.
BMC Bioinform.
Monica Chiogna, Maria Sofia Massa, Davide Risso, Chiara Romualdi
2009 J jnl
A modified LOESS normalization applied to microRNA arrays: a comparative evaluation.
Bioinform.
Davide Risso, Maria Sofia Massa, Monica Chiogna, Chiara Romualdi
2009 J jnl
A-MADMAN: Annotation-based microarray data meta-analysis tool.
BMC Bioinform.
Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi