Davide Gadioli

57 papers A 2B 1C 5Journal 29Unranked 19
YearRankTypeTitle / Venue / Authors
2025 B conf
An Artificial Bee Colony algorithm with Machine Learning for Constrained Optimization in HPC.
MASCOTS
Roberto Sala, Nikita Litovchenko, Davide Gadioli, Gianluca Palermo, Danilo Ardagna
2025 J jnl
Condensation of Force Field Parameters from Machine Learning Predicted Distributions for High-Throughput Virtual Screening Applications.
J. Chem. Inf. Model.
Domenico Bonanni, Yuedong Zhang, Davide Gadioli, Gianluca Scarpellini, Pietro Morerio, Alessio Del Bue, Andrea Rosario Beccari, Gianluca Palermo
2025 J jnl
Efficient parameter tuning for a structure-based virtual screening HPC application.
J. Parallel Distributed Comput.
Bruno Guindani, Davide Gadioli, Roberto Rocco, Danilo Ardagna, Gianluca Palermo
2025 J jnl
Harnessing quality-throughput trade-off in scoring functions for extreme-scale virtual screening campaigns.
Future Gener. Comput. Syst.
Yuedong Zhang, Gianmarco Accordi, Davide Gadioli, Gianluca Palermo
2025 C conf
Towards High-Performance and Portable Molecular Docking on CPUs Through Vectorization.
CLUSTER
Gianmarco Accordi, Jens Domke, Theresa Pollinger, Davide Gadioli, Gianluca Palermo
2025 J jnl
Towards High-Performance and Portable Molecular Docking on CPUs through Vectorization.
CoRR
Gianmarco Accordi, Jens Domke, Theresa Pollinger, Davide Gadioli, Gianluca Palermo
2024 — conf
A geometric XAI approach to protein pocket detection.
xAI (Late-breaking Work, Demos, Doctoral Consortium)
Giovanni Bocchi, Patrizio Frosini, Alessandra Micheletti, Alessandro Pedretti, Gianluca Palermo, Davide Gadioli, Carmen Gratteri, Filippo Lunghini, Andrea Rosario Beccari, Anna Fava, Carmine Talarico
2024 J jnl
Efficient Parameter Tuning for a Structure-Based Virtual Screening HPC Application.
CoRR
Bruno Guindani, Davide Gadioli, Roberto Rocco, Danilo Ardagna, Gianluca Palermo
2024 J jnl
Enabling performance portability on the LiGen drug discovery pipeline.
Future Gener. Comput. Syst.
Luigi Crisci, Lorenzo Carpentieri, Biagio Cosenza, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Gianluca Palermo, Andrea Rosario Beccari
2024 J jnl
GPU-optimized approaches to molecular docking-based virtual screening in drug discovery: A comparative analysis.
J. Parallel Distributed Comput.
Emanuele Vitali, Federico Ficarelli, Mauro Bisson, Davide Gadioli, Gianmarco Accordi, Massimiliano Fatica, Andrea Rosario Beccari, Gianluca Palermo
2024 — conf
LIGATE - LIgand Generator and portable drug discovery platform AT Exascale.
CF (Companion)
Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Yuedong Zhang, Emanuele Vitali, Bruno Guindani, Danilo Ardagna, Cristina Silvano, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Akash Deep Biswas, Jan Martinovic, Martin Golasowski, Paulo Silva, Ada Böhm, Jakub Beránek, Jan Krenek, Branislav Jansik, Peter Thoman, Philip Salzmann, Thomas Fahringer, Torsten Schwede, Leila Tamara Alexander, Gerardo Tauriello, Janani Durairaj, Biagio Cosenza, Luigi Crisci, Andrew Emerson, Federico Ficarelli, Erik Lindahl, Sebastian Wingbermühle, Daniele Gregori, Silvano Coletti, Emanuele Sana, Philipp Gschwandtner
2024 J jnl
Out of kernel tuning and optimizations for portable large-scale docking experiments on GPUs.
J. Supercomput.
Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Luigi Crisci, Biagio Cosenza, Andrea Beccari, Gianluca Palermo
2024 — conf
PAK-MAN: Enhancing Parallel Bayesian Optimization of Cloud and HPC Systems via Machine Learning.
VALUETOOLS
Leonardo Barone, Bruno Guindani, Roberto Sala, Davide Gadioli, Danilo Ardagna, Alessandra Guglielmi
2024 — conf
Unlocking performance portability on LUMI-G supercomputer: A virtual screening case study.
IWOCL
Gianmarco Accordi, Davide Gadioli, Gianluca Palermo, Luigi Crisci, Lorenzo Carpentieri, Biagio Cosenza, Andrea Rosario Beccari
2024 — conf
ZSMILES: An Approach for Efficient SMILES Storage for Random Access in Virtual Screening.
IPDPS (Workshops)
Gianmarco Accordi, Davide Gadioli, Giorgio Seguini, Andrea Rosario Beccari, Gianluca Palermo
2024 J jnl
ZSMILES: an approach for efficient SMILES storage for random access in Virtual Screening.
CoRR
Gianmarco Accordi, Davide Gadioli, Giorgio Seguini, Andrea Rosario Beccari, Gianluca Palermo
2023 — conf
Domain-Specific Energy Modeling for Drug Discovery and Magnetohydrodynamics Applications.
SC Workshops
Lorenzo Carpentieri, Marco D'Antonio, Kaijie Fan, Luigi Crisci, Biagio Cosenza, Federico Ficarelli, Daniele Cesarini, Gianmarco Accordi, Davide Gadioli, Gianluca Palermo, Peter Thoman, Philip Salzmann, Philipp Gschwandtner, Markus Wippler, Filippo Marchetti, Daniele Gregori, Andrea Rosario Beccari
2023 J jnl
EXSCALATE: An Extreme-Scale Virtual Screening Platform for Drug Discovery Targeting Polypharmacology to Fight SARS-CoV-2.
IEEE Trans. Emerg. Top. Comput.
Davide Gadioli, Emanuele Vitali, Federico Ficarelli, Chiara Latini, Candida Manelfi, Carmine Talarico, Cristina Silvano, Carlo Cavazzoni, Gianluca Palermo, Andrea Rosario Beccari
2023 J jnl
Improving computation efficiency using input and architecture features for a virtual screening application.
CoRR
Gianmarco Accordi, Emanuele Vitali, Davide Gadioli, Luigi Crisci, Biagio Cosenza, Mauro Bisson, Massimiliano Fatica, Andrea Beccari, Gianluca Palermo
2023 — conf
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach.
CF
Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Biagio Cosenza, Luigi Crisci, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Erik Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner
2023 J jnl
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach.
CoRR
Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Luigi Crisci, Biagio Cosenza, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Erik Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner
2022 — conf
An extreme-scale virtual screening platform for drug discovery.
CF
Davide Gadioli, Emanuele Vitali, Federico Ficarelli, Chiara Latini, Candida Manelfi, Carmine Talarico, Cristina Silvano, Andrea Rosario Beccari, Gianluca Palermo
2022 J jnl
GPU-optimized Approaches to Molecular Docking-based Virtual Screening in Drug Discovery: A Comparative Analysis.
CoRR
Emanuele Vitali, Federico Ficarelli, Mauro Bisson, Davide Gadioli, Massimiliano Fatica, Andrea Rosario Beccari, Gianluca Palermo
2022 J jnl
Legio: fault resiliency for embarrassingly parallel MPI applications.
J. Supercomput.
Roberto Rocco, Davide Gadioli, Gianluca Palermo
2022 J jnl
Pegasus: Performance Engineering for Software Applications Targeting HPC Systems.
IEEE Trans. Software Eng.
Pedro Pinto, João Bispo, João M. P. Cardoso, Jorge G. Barbosa, Davide Gadioli, Gianluca Palermo, Jan Martinovic, Martin Golasowski, Katerina Slaninová, Radim Cmar, Cristina Silvano
2022 — conf
Towards a Portable Drug Discovery Pipeline with SYCL 2020.
IWOCL
Luigi Crisci, Majid Salimi Beni, Biagio Cosenza, Nicolò Scipione, Davide Gadioli, Emanuele Vitali, Gianluca Palermo, Andrea Beccari
2021 J jnl
A Review on Parallel Virtual Screening Softwares for High Performance Computers.
CoRR
Natarajan Arul Murugan, Artur Podobas, Davide Gadioli, Emanuele Vitali, Gianluca Palermo, Stefano Markidis
2021 J jnl
An Efficient Monte Carlo-Based Probabilistic Time-Dependent Routing Calculation Targeting a Server-Side Car Navigation System.
IEEE Trans. Emerg. Top. Comput.
Emanuele Vitali, Davide Gadioli, Gianluca Palermo, Martin Golasowski, João Bispo, Pedro Pinto, Jan Martinovic, Katerina Slaninová, João M. P. Cardoso, Cristina Silvano
2021 J jnl
EXSCALATE: An extreme-scale in-silico virtual screening platform to evaluate 1 trillion compounds in 60 hours on 81 PFLOPS supercomputers.
CoRR
Davide Gadioli, Emanuele Vitali, Federico Ficarelli, Chiara Latini, Candida Manelfi, Carmine Talarico, Cristina Silvano, Carlo Cavazzoni, Gianluca Palermo, Andrea Rosario Beccari
2021 J jnl
Legio: Fault Resiliency for Embarrassingly Parallel MPI Applications.
CoRR
Roberto Rocco, Davide Gadioli, Gianluca Palermo
2021 A conf
Parametric Throughput Oriented Large Integer Multipliers for High Level Synthesis.
DATE
Emanuele Vitali, Davide Gadioli, Fabrizio Ferrandi, Gianluca Palermo
2021 J jnl
Tunable approximations to control time-to-solution in an HPC molecular docking Mini-App.
J. Supercomput.
Davide Gadioli, Gianluca Palermo, Stefano Cherubin, Emanuele Vitali, Giovanni Agosta, Candida Manelfi, Andrea Rosario Beccari, Carlo Cavazzoni, Nico Sanna, Cristina Silvano
2021 — conf
Understanding the I/O Impact on the Performance of High-Throughput Molecular Docking.
PDSW@SC
Stefano Markidis, Davide Gadioli, Emanuele Vitali, Gianluca Palermo
2019 J jnl
An Efficient Monte Carlo-based Probabilistic Time-Dependent Routing Calculation Targeting a Server-Side Car Navigation System.
CoRR
Emanuele Vitali, Davide Gadioli, Gianluca Palermo, Martin Golasowski, João Bispo, Pedro Pinto, Jan Martinovic, Katerina Slaninová, João M. P. Cardoso, Cristina Silvano
2019 — conf
An hybrid approach to accelerate a molecular docking application for virtual screening in heterogeneous nodes: POSTER.
CF
Emanuele Vitali, Davide Gadioli, Andrea Beccari, Carlo Cavazzoni, Cristina Silvano, Gianluca Palermo
2019 — —
Dynamic application autotuning for self-aware approximate computing.
Davide Gadioli
2019 J jnl
Exploiting OpenMP & OpenACC to Accelerate a Molecular Docking Mini-App in Heterogeneous HPC Nodes.
CoRR
Emanuele Vitali, Davide Gadioli, Gianluca Palermo, Andrea Beccari, Carlo Cavazzoni, Cristina Silvano
2019 J jnl
Exploiting OpenMP and OpenACC to accelerate a geometric approach to molecular docking in heterogeneous HPC nodes.
J. Supercomput.
Emanuele Vitali, Davide Gadioli, Gianluca Palermo, Andrea Beccari, Carlo Cavazzoni, Cristina Silvano
2019 J jnl
On-line Application Autotuning Exploiting Ensemble Models.
CoRR
Tomás Martinovic, Davide Gadioli, Gianluca Palermo, Cristina Silvano
2019 C conf
Supporting the Scale-Up of High Performance Application to Pre-Exascale Systems: The ANTAREX Approach.
PDP
Cristina Silvano, Giovanni Agosta, Andrea Bartolini, Andrea Rosario Beccari, Luca Benini, Loïc Besnard, João Bispo, Radim Cmar, João M. P. Cardoso, Carlo Cavazzoni, Daniele Cesarini, Stefano Cherubin, Federico Ficarelli, Davide Gadioli, Martin Golasowski, Imane Lasri, Antonio Libri, Candida Manelfi, Jan Martinovic, Gianluca Palermo, Pedro Pinto, Erven Rohou, Nico Sanna, Katerina Slaninová, Emanuele Vitali
2019 J jnl
The ANTAREX Domain Specific Language for High Performance Computing.
CoRR
Cristina Silvano, Giovanni Agosta, Andrea Bartolini, Andrea Rosario Beccari, Luca Benini, Loïc Besnard, João Bispo, Radim Cmar, João M. P. Cardoso, Carlo Cavazzoni, Daniele Cesarini, Stefano Cherubin, Federico Ficarelli, Davide Gadioli, Martin Golasowski, Antonio Libri, Jan Martinovic, Gianluca Palermo, Pedro Pinto, Erven Rohou, Katerina Slaninová, Emanuele Vitali
2019 J jnl
The ANTAREX domain specific language for high performance computing.
Microprocess. Microsystems
Cristina Silvano, Giovanni Agosta, Andrea Bartolini, Andrea Rosario Beccari, Luca Benini, Loïc Besnard, João Bispo, Radim Cmar, João M. P. Cardoso, Carlo Cavazzoni, Daniele Cesarini, Stefano Cherubin, Federico Ficarelli, Davide Gadioli, Martin Golasowski, Antonio Libri, Jan Martinovic, Gianluca Palermo, Emanuele Vitali
2019 J jnl
Tunable Approximations to Control Time-to-Solution in an HPC Molecular Docking Mini-App.
CoRR
Davide Gadioli, Gianluca Palermo, Stefano Cherubin, Emanuele Vitali, Giovanni Agosta, Candida Manelfi, Andrea Rosario Beccari, Carlo Cavazzoni, Nico Sanna, Cristina Silvano
2019 J jnl
mARGOt: A Dynamic Autotuning Framework for Self-Aware Approximate Computing.
IEEE Trans. Computers
Davide Gadioli, Emanuele Vitali, Gianluca Palermo, Cristina Silvano
2018 C conf
ANTAREX: A DSL-Based Approach to Adaptively Optimizing and Enforcing Extra-Functional Properties in High Performance Computing.
DSD
Cristina Silvano, Giovanni Agosta, Andrea Bartolini, Andrea Rosario Beccari, Luca Benini, Loïc Besnard, João Bispo, Radim Cmar, João M. P. Cardoso, Carlo Cavazzoni, Stefano Cherubin, Davide Gadioli, Martin Golasowski, Imane Lasri, Jan Martinovic, Gianluca Palermo, Pedro Pinto, Erven Rohou, Nico Sanna, Katerina Slaninová, Emanuele Vitali
2018 — conf
Accelerating a Geometric Approach to Molecular Docking with OpenACC.
PBio@EuroMPI
Emanuele Vitali, Davide Gadioli, Gianluca Palermo, Andrea Beccari, Cristina Silvano
2018 — conf
Autotuning and adaptivity in energy efficient HPC systems: the ANTAREX toolbox.
CF
Cristina Silvano, Gianluca Palermo, Giovanni Agosta, Amir H. Ashouri, Davide Gadioli, Stefano Cherubin, Emanuele Vitali, Luca Benini, Andrea Bartolini, Daniele Cesarini, João M. P. Cardoso, João Bispo, Pedro Pinto, Ricardo Nobre, Erven Rohou, Loïc Besnard, Imane Lasri, Nico Sanna, Carlo Cavazzoni, Radim Cmar, Jan Martinovic, Katerina Slaninová, Martin Golasowski, Andrea Rosario Beccari, Candida Manelfi
2018 — conf
Design Space Pruning and Computational Workload Splitting for Autotuning OpenCL Applications.
RAPIDO
Ahmet Erdem, Davide Gadioli, Gianluca Palermo, Cristina Silvano
2018 A conf
SOCRATES - A seamless online compiler and system runtime autotuning framework for energy-aware applications.
DATE
Davide Gadioli, Ricardo Nobre, Pedro Pinto, Emanuele Vitali, Amir H. Ashouri, Gianluca Palermo, João M. P. Cardoso, Cristina Silvano
2017 J jnl
CONTREX: Design of embedded mixed-criticality CONTRol systems under consideration of EXtra-functional properties.
Microprocess. Microsystems
Kim Grüttner, Ralph Görgen, Sören Schreiner, Fernando Herrera, Pablo Peñil, Julio L. Medina, Eugenio Villar, Gianluca Palermo, William Fornaciari, Carlo Brandolese, Davide Gadioli, Emanuele Vitali, Davide Zoni, Sara Bocchio, Luca Ceva, Paolo Azzoni, Massimo Poncino, Sara Vinco, Enrico Macii, Salvatore Cusenza, John M. Favaro, Raúl Valencia, Ingo Sander, Kathrin Rosvall, Nima Khalilzad, Davide Quaglia
2017 — conf
The ANTAREX tool flow for monitoring and autotuning energy efficient HPC systems.
SAMOS
Cristina Silvano, Giovanni Agosta, Jorge G. Barbosa, Andrea Bartolini, Andrea Rosario Beccari, Luca Benini, João Bispo, João M. P. Cardoso, Carlo Cavazzoni, Stefano Cherubin, Radim Cmar, Davide Gadioli, Candida Manelfi, Jan Martinovic, Ricardo Nobre, Gianluca Palermo, Martin Palkovic, Pedro Pinto, Erven Rohou, Nico Sanna, Katerina Slaninová
2016 — conf
Application Adaptation at Runtime through Dynamic Knobs Autotuning.
RES4ANT@DATE
Davide Gadioli, Gianluca Palermo, Cristina Silvano
2016 C conf
CONTREX: Design of Embedded Mixed-Criticality CONTRol Systems under Consideration of EXtra-Functional Properties.
DSD
Ralph Görgen, Kim Grüttner, Fernando Herrera, Pablo Peñil, Julio L. Medina, Eugenio Villar, Gianluca Palermo, William Fornaciari, Carlo Brandolese, Davide Gadioli, Sara Bocchio, Luca Ceva, Paolo Azzoni, Massimo Poncino, Sara Vinco, Enrico Macii, Salvatore Cusenza, John M. Favaro, Raúl Valencia, Ingo Sander, Kathrin Rosvall, Davide Quaglia
2016 — conf
The ANTAREX approach to autotuning and adaptivity for energy efficient HPC systems.
Conf. Computing Frontiers
Cristina Silvano, Giovanni Agosta, Stefano Cherubin, Davide Gadioli, Gianluca Palermo, Andrea Bartolini, Luca Benini, Jan Martinovic, Martin Palkovic, Katerina Slaninová, João Bispo, João M. P. Cardoso, Rui Abreu, Pedro Pinto, Carlo Cavazzoni, Nico Sanna, Andrea Rosario Beccari, Radim Cmar, Erven Rohou
2015 — conf
Application autotuning to support runtime adaptivity in multicore architectures.
SAMOS
Davide Gadioli, Gianluca Palermo, Cristina Silvano
2014 — conf
Evaluating orthogonality between application auto-tuning and run-time resource management for adaptive OpenCL applications.
ASAP
Edoardo Paone, Davide Gadioli, Gianluca Palermo, Vittorio Zaccaria, Cristina Silvano
2014 C conf
OpenCL Application Auto-tuning and Run-Time Resource Management for Multi-core Platforms.
ISPA
Davide Gadioli, Simone Libutti, Giuseppe Massari, Edoardo Paone, Michele Scandale, Patrick Bellasi, Gianluca Palermo, Vittorio Zaccaria, Giovanni Agosta, William Fornaciari, Cristina Silvano