David Svoboda - RankMe

68 papers A 1B 5C 2Misc 2Journal 14Unranked 39

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Automated Code Repair for C/C++ Static Analysis Alerts. CoRR David Svoboda, Lori Flynn, William Klieber, Michael Duggan, Nicholas Reimer, Joseph Sible
2024	—	`conf`	COMPYDA: An Online Tool for Verifying the Similarity of Image Datasets. ISBI Tereza Necasová, Daniel Múcka, David Svoboda
2024	J	`jnl`	Generative modeling of living cells with SO(3)-equivariant implicit neural representations. Medical Image Anal. David Wiesner, Julian Suk, Sven Dummer, Tereza Necasová, Vladimír Ulman, David Svoboda, Jelmer M. Wolterink
2023	J	`jnl`	Generative modeling of living cells with SO(3)-equivariant implicit neural representations. CoRR David Wiesner, Julian Suk, Sven Dummer, Tereza Necasová, Vladimír Ulman, David Svoboda, Jelmer M. Wolterink
2023	—	`ed.`	Simulation and Synthesis in Medical Imaging - 8th International Workshop, SASHIMI 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings SASHIMI@MICCAI Jelmer M. Wolterink, David Svoboda, Can Zhao, Virginia Fernandez
2022	—	`conf`	Implicit Neural Representations for Generative Modeling of Living Cell Shapes. MICCAI (4) David Wiesner, Julian Suk, Sven Dummer, David Svoboda, Jelmer M. Wolterink
2022	J	`jnl`	Implicit Neural Representations for Generative Modeling of Living Cell Shapes. CoRR David Wiesner, Julian Suk, Sven Dummer, David Svoboda, Jelmer M. Wolterink
2022	—	`ed.`	Simulation and Synthesis in Medical Imaging - 7th International Workshop, SASHIMI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings SASHIMI@MICCAI Can Zhao, David Svoboda, Jelmer M. Wolterink, María Escobar
2021	—	`conf`	Automated Code Repair to Ensure Spatial Memory Safety. APR@ICSE William Klieber, Ruben Martins, Ryan Steele, Matt Churilla, Mike McCall, David Svoboda
2021	—	`conf`	Hands-on Tutorial: How Exploitable is Insecure C Code? SecDev David Svoboda
2021	—	`ed.`	Simulation and Synthesis in Medical Imaging - 6th International Workshop, SASHIMI 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings SASHIMI@MICCAI David Svoboda, Ninon Burgos, Jelmer M. Wolterink, Can Zhao
2021	—	`conf`	Transfer Learning in Optical Microscopy. SASHIMI@MICCAI Marián Kozlovský, David Wiesner, David Svoboda
2020	—	`conf`	Image-Based Simulations of Tubular Network Formation. ISBI David Svoboda, Tereza Necasová
2020	—	`ed.`	Simulation and Synthesis in Medical Imaging - 5th International Workshop, SASHIMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings SASHIMI@MICCAI Ninon Burgos, David Svoboda, Jelmer M. Wolterink, Can Zhao
2019	J	`jnl`	CytoPacq: a web-interface for simulating multi-dimensional cell imaging. Bioinform. David Wiesner, David Svoboda, Martin Maska, Michal Kozubek
2019	—	`conf`	On Generative Modeling of Cell Shape Using 3D GANs. ICIAP (2) David Wiesner, Tereza Necasová, David Svoboda
2019	—	`ed.`	Simulation and Synthesis in Medical Imaging - 4th International Workshop, SASHIMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13, 2019, Proceedings SASHIMI@MICCAI Ninon Burgos, Ali Gooya, David Svoboda
2019	B	`conf`	Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. ICIP Martin Maska, Tereza Necasová, David Wiesner, Dmitry V. Sorokin, Igor Peterlík, Vladimír Ulman, David Svoboda
2018	J	`jnl`	Are Ante Rem Structuralists Descriptivist Or Revisionist Metaphysicians? How We Speak About Numbers. FLAP Prokop Sousedík, David Svoboda
2018	—	`conf`	Detecting Leaks of Sensitive Data Due to Stale Reads. SecDev Will Snavely, William Klieber, Ryan Steele, David Svoboda, Andrew Kotov
2018	J	`jnl`	Editorial. FLAP Michael Gabbay, Prokop Sousedík, David Svoboda
2018	J	`jnl`	FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells With Growing and Branching Filopodia. IEEE Trans. Medical Imaging Dmitry V. Sorokin, Igor Peterlík, Vladimír Ulman, David Svoboda, Tereza Necasová, Katsiarina Morgaenko, Lívia Eiselleová, Lenka Tesarová, Martin Maska
2018	—	`conf`	Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. SASHIMI@MICCAI Igor Peterlík, David Svoboda, Vladimír Ulman, Dmitry V. Sorokin, Martin Maska
2018	—	`conf`	Prioritizing alerts from multiple static analysis tools, using classification models. SQUADE@ICSE Lori Flynn, William Snavely, David Svoboda, Nathan M. VanHoudnos, Richard Qin, Jennifer Burns, David Zubrow, Robert Stoddard, Guillermo Marce-Santurio
2018	—	`conf`	Tubular Network Formation Process Using 3D Cellular Potts Model. SASHIMI@MICCAI David Svoboda, Tereza Necasová, Lenka Tesarová, Pavel Simara
2018	—	`conf`	Visual and Quantitative Comparison of Real and Simulated Biomedical Image Data. ECCV Workshops (6) Tereza Necasová, David Svoboda
2017	J	`jnl`	FTutor: An interactive guide to the fundamentals of frequency analysis. Comput. Appl. Eng. Educ. Petr Seckár, David Svoboda
2017	—	`conf`	Hands-On Tutorial: Auditing Static Analysis Alerts Using a Lexicon & Rules. SecDev Lori Flynn, David Svoboda, William Snavely
2017	J	`jnl`	MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy. IEEE Trans. Medical Imaging David Svoboda, Vladimír Ulman
2017	—	`conf`	Model-based generation of synthetic 3D time-lapse sequences of motile cells with growing filopodia. ISBI Dmitry V. Sorokin, Igor Peterlík, Vladimír Ulman, David Svoboda, Martin Maska
2017	—	`conf`	Multimodal Simulations in Live Cell Imaging. SASHIMI@MICCAI David Svoboda, Michal Kozubek
2016	—	`conf`	Avoiding Insecure C++ - How to Avoid Common C++ Security Vulnerabilities. SecDev Aaron Ballman, David Svoboda
2016	—	`conf`	Beyond errno: Error Handling in "C". SecDev David Svoboda
2016	—	`conf`	Static Analysis Alert Audits: Lexicon & Rules. SecDev David Svoboda, Lori Flynn, Will Snavely
2016	B	`conf`	Vascular network formation in silico using the extended cellular potts model. ICIP David Svoboda, Vladimír Ulman, Peter Kovác, Barbara Salingova, Lenka Tesarová, Irena K. Koutna, Petr Matula
2015	—	`conf`	On proper simulation of chromatin structure in static images as well as in time-lapse sequences in fluorescence microscopy. ISBI David Svoboda, Vladimír Ulman, Igor Peterlík
2015	—	`conf`	TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells. ICIAP (1) Vladimír Ulman, Zoltán Orémus, David Svoboda
2014	J	`jnl`	A benchmark for comparison of cell tracking algorithms. Bioinform. Martin Maska, Vladimír Ulman, David Svoboda, Pavel Matula, Petr Matula, Cristina Ederra, Ainhoa Urbiola, Tomás España, Subramanian Venkatesan, Deepak M. W. Balak, Pavel Karas, Tereza Bolcková, Markéta Streitová, Craig Carthel, Stefano Coraluppi, Nathalie Harder, Karl Rohr, Klas E. G. Magnusson, Joakim Jaldén, Helen M. Blau, Oleh Dzyubachyk, Pavel Krízek, Guy M. Hagen, David Pastor-Escuredo, Daniel Jimenez-Carretero, María J. Ledesma-Carbayo, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek, Carlos Ortiz-de-Solorzano
2014	J	`jnl`	A performance evaluation of statistical tests for edge detection in textured images. Comput. Vis. Image Underst. Ian Williams, Nicholas Bowring, David Svoboda
2014	C	`conf`	Comparison of 3D Texture-Based Image Descriptors in Fluorescence Microscopy. IWCIA Tomás Majtner, David Svoboda
2014	J	`jnl`	Efficient k-NN based HEp-2 cells classifier. Pattern Recognit. Roman Stoklasa, Tomás Majtner, David Svoboda
2014	B	`conf`	On proper simulation of phenomena influencing image formation in fluorescence microscopy. ICIP David Svoboda, Vladimír Ulman, Ludek Matyska, Martin Maska, Jan Bella, Stanislav Stejskal
2014	—	`conf`	Pointer Ownership Model. HICSS David Svoboda, Lutz Wrage
2014	B	`conf`	RSURF - The Efficient Texture-Based Descriptor for Fluorescence Microscopy Images of HEP-2 Cells. ICPR Tomás Majtner, Roman Stoklasa, David Svoboda
2014	—	`conf`	Texture analysis using 3D Gabor features and 3D MPEG-7 Edge Histogram descriptor in fluorescence microscopy. IC3D Tomás Majtner, David Svoboda
2013	—	`conf`	Deconvolution of Huge 3-D Images: Parallelization Strategies on a Multi-GPU System. ICA3PP (1) Pavel Karas, Michal Kuderjavý, David Svoboda
2013	—	`conf`	Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations. ICIAP (2) David Svoboda, Vladimír Ulman
2012	—	`conf`	Extension of Tamura Texture Features for 3D Fluorescence Microscopy. 3DIMPVT Tomás Majtner, David Svoboda
2012	B	`conf`	GPU Optimization of Convolution for Large 3-D Real Images. ACIVS Pavel Karas, David Svoboda, Pavel Zemcík
2012	—	`conf`	Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. ICIAR (2) David Svoboda, Vladimír Ulman
2011	J	`jnl`	Convolution of large 3D images on GPU and its decomposition. EURASIP J. Adv. Signal Process. Pavel Karas, David Svoboda
2011	—	`conf`	Efficient Computation of Convolution of Huge Images. ICIAP (1) David Svoboda
2011	—	`conf`	Generation of 3D Digital Phantoms of Colon Tissue. ICIAR (2) David Svoboda, Ondrej Homola, Stanislav Stejskal
2010	—	`conf`	A Novel Performance Metric for Grey-scale Edge Detection. VISAPP (1) Ian Williams, David Svoboda, Nicholas Bowring
2010	A	`conf`	As-If Infinitely Ranged Integer Model. ISSRE Roger B. Dannenberg, Will Dormann, David Keaton, Robert C. Seacord, David Svoboda, Alex Volkovitsky, Timothy Wilson, Thomas Plum
2008	—	`conf`	Statistical edge detection of concealed weapons using artificial neural networks. Image Processing: Algorithms and Systems Ian Williams, David Svoboda, Nicholas Bowring, Elizabeth Guest
2007	—	`conf`	A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy. ISVC (2) Martin Maska, Jan Hubený, David Svoboda, Michal Kozubek
2007	C	`conf`	On Simulating 3D Fluorescent Microscope Images. CAIP David Svoboda, Marek Kasík, Martin Maska, Jan Hubený, Stanislav Stejskal, Michal Zimmermann
2006	—	`conf`	Statistical techniques for edge detection in histological images. VISAPP (1) David Svoboda, Ian Williams, Nicholas Bowring, Elizabeth Guest
2003	—	`conf`	Source language diagnostics for MT. MTSummit Teruko Mitamura, Kathryn Baker, David Svoboda, Eric Nyberg
2003	—	`conf`	Spherical Object Reconstruction Using Simplex Meshes from Sparse Data. DGCI Pavel Matula, David Svoboda
2003	—	`conf`	The JAVELIN Question-Answering System at TREC 2003: A Multi-Strategh Approach with Dynamic Planning. TREC Eric Nyberg, Teruko Mitamura, James P. Callan, Jaime G. Carbonell, Robert E. Frederking, Kevyn Collins-Thompson, Laurie Hiyakumoto, Yifen Huang, Curtis Huttenhower, Scott Judy, Jeongwoo Ko, Anna Kupsc, Lucian Vlad Lita, Vasco Pedro, David Svoboda, Benjamin Van Durme
2003	—	`conf`	Tissue Reconstruction Based on Deformation of Dual Simplex Meshes. DGCI David Svoboda, Pavel Matula
2002	Misc	`conf`	Deriving Semantic Knowledge from Descriptive Texts Using an MT System. AMTA Eric Nyberg, Teruko Mitamura, Kathryn L. Baker, David Svoboda, Brian Peterson, Jennifer Williams
2002	—	`conf`	The JAVELIN Question-Answering System at TREC 2002. TREC Eric Nyberg, Teruko Mitamura, Jaime G. Carbonell, James P. Callan, Kevyn Collins-Thompson, Krzysztof Czuba, Michael Duggan, Laurie Hiyakumoto, N. Hu, Yifen Huang, Jeongwoo Ko, Lucian Vlad Lita, S. Murtagh, Vasco Pedro, David Svoboda
2002	Misc	`conf`	The KANTOO MT System: Controlled Language Checker and Lexical Maintenance Tool. AMTA Teruko Mitamura, Eric Nyberg, Kathryn L. Baker, Peter A. Cramer, Jeongwoo Ko, David Svoboda, Michael Duggan
2001	—	`conf`	Pronominal anaphora resolution in KANTOO English-to-Spanish machine translation system. MTSummit Teruko Mitamura, Eric Nyberg, Enrique Torrejón, David Svoboda, Kathryn L. Baker
2001	—	`conf`	Spherical Object Reconstruction Using Star-Shaped Simplex Meshes. EMMCVPR Pavel Matula, David Svoboda