David S. Campo

25 papers Journal 12Unranked 13

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences. J. Comput. Biol. David S. Campo, Alexander Mosa, Yury Khudyakov
2022	J	`jnl`	Primary case inference in viral outbreaks through analysis of intra-host variant population. BMC Bioinform. Walker Gussler, David S. Campo, Zoya Dimitrova, Pavel Skums, Yury Khudyakov
2020	J	`jnl`	Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences. BMC Bioinform. David S. Campo, Yury Khudyakov
2018	J	`jnl`	Automated quality control for a molecular surveillance system. BMC Bioinform. Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov
2018	J	`jnl`	Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. BMC Bioinform. Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
2018	J	`jnl`	QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinform. Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov
2017	—	`conf`	Efficient filtering algorithm for detection of genetic similarity between large genomic datasets. ICCABS Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
2015	—	`conf`	Algorithms for prediction of viral transmission using analysis of intra-host viral populations. ICCABS Pavel Skums, Olga Glebova, David S. Campo, Nana Li, Zoya Dimitrova, Seth Sims, Leonid Bunimovich, Alex Zelikovsky, Yury Khudyakov
2015	J	`jnl`	Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Bioinform. Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov
2015	—	`conf`	Efficient detection of viral transmission with threshold-based methods. ICCABS Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue
2014	—	`conf`	Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data. ICCABS Pavel Skums, Alexander Artyomenko, Olga Glebova, Alex Zelikovsky, David S. Campo, Zoya Dimitrova, Yuri Khudyakov
2014	—	`conf`	New computational methods for assessing the genetic relatedness of close viral variants. ICCABS David S. Campo, Zoya Dimitrova, Guo-liang Xia, Pavel Skums, Lilia Ganova-Raeva, Yuri Khudyakov
2013	—	`conf`	Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies. ICCABS Pavel Skums, David S. Campo, Zoya Dimitrova, Leonid Bunimovich, Yuri Khudyakov
2013	—	`conf`	Mutational robustness of hepatitis C virus intra-host variants. ICCABS David S. Campo, Zoya Dimitrova, Pavel Skums, Yuri Khudyakov
2012	J	`jnl`	Coordinated evolution of the Hepatitis B Virus Polymerase. Silico Biol. David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov
2012	J	`jnl`	Differences in variability of hypervariable region 1 of hepatitis C virus (HCV) between acute and chronic stages of HCV infection. Silico Biol. Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili
2012	J	`jnl`	Efficient error correction for next-generation sequencing of viral amplicons. BMC Bioinform. Pavel Skums, Zoya Dimitrova, David S. Campo, Gilberto Vaughan, Livia Rossi, Joseph C. Forbi, Jonny Yokosawa, Alex Zelikovsky, Yuri Khudyakov
2012	J	`jnl`	Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. Silico Biol. Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov
2012	J	`jnl`	Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response. Silico Biol. Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov
2011	—	`conf`	Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. BIBM Workshops Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov
2011	—	`conf`	Modelling differential interferon resistance of HCV quasispecies. BIBM Workshops Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov
2011	—	`conf`	Network of coordinated substitutions in the Hepatitis B virus polymerase. BIBM Workshops David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov
2011	—	`conf`	Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection. BIBM Workshops Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili
2008	—	`conf`	HCV Quasispecies Assembly Using Network Flows. ISBRA Kelly Westbrooks, Irina Astrovskaya, David S. Campo, Yuri Khudyakov, Piotr Berman, Alexander Zelikovsky
2008	—	`conf`	Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure. ISBRA David S. Campo, Zoya Dimitrova, Yuri Khudyakov