David R. Penas

18 papers B 1Misc 2Journal 12Unranked 3

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Parameter estimation in a whole-brain network model of epilepsy: Comparison of parallel global optimization solvers. PLoS Comput. Biol. David R. Penas, Meysam Hashemi, Viktor K. Jirsa, Julio R. Banga
2024	J	`jnl`	Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells. PLoS Comput. Biol. Paul F. Lang, David R. Penas, Julio R. Banga, Daniel Weindl, Béla Novák
2023	J	`jnl`	A new two-phase heuristic for a problem of food distribution with compartmentalized trucks and trailers. Int. Trans. Oper. Res. Laura Davila-Pena, David R. Penas, Balbina Casas-Méndez
2023	J	`jnl`	Computational advances in polynomial optimization: RAPOSa, a freely available global solver. J. Glob. Optim. Brais González-Rodríguez, Joaquín Ossorio-Castillo, Julio González-Díaz, Ángel Manuel González-Rueda, David R. Penas, Diego Rodríguez Martínez
2023	J	`jnl`	Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants. PLoS Comput. Biol. Ahmed Taha, Mauricio Patón, David R. Penas, Julio R. Banga, Jorge Rodríguez
2020	J	`jnl`	A metaheuristic penalty approach for the starting point in nonlinear programming. RAIRO Oper. Res. David R. Penas, Marcos Raydan
2019	J	`jnl`	Enhanced global optimization methods applied to complex fisheries stock assessment models. Appl. Soft Comput. David R. Penas, Andrés Gómez, Basilio B. Fraguela, María J. Martín, Santiago Cerviño
2019	J	`jnl`	Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology. J. Supercomput. Patricia González, Pablo Argüeso-Alejandro, David R. Penas, Xoán C. Pardo, Julio Saez-Rodriguez, Julio R. Banga, Ramón Doallo
2018	—	`conf`	Multimethod Optimization for Reverse Engineering of Complex Biological Networks. PBio@EuroMPI Patricia González, David R. Penas, Xoán C. Pardo, Julio R. Banga, Ramón Doallo
2018	J	`jnl`	Multimethod optimization in the cloud: A case-study in systems biology modelling. Concurr. Comput. Pract. Exp. Patricia González, David R. Penas, Xoán C. Pardo, Julio R. Banga, Ramón Doallo
2017	J	`jnl`	A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology. Clust. Comput. Diego Teijeiro, Xoán C. Pardo, David R. Penas, Patricia González, Julio R. Banga, Ramón Doallo
2017	J	`jnl`	Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy. BMC Bioinform. David R. Penas, Patricia González, Jose A. Egea, Ramón Doallo, Julio R. Banga
2017	B	`conf`	Using the Cloud for parameter estimation problems: comparing Spark vs MPI with a case-study. CCGrid Patricia González, Xoán C. Pardo, David R. Penas, Diego Teijeiro, Julio R. Banga, Ramón Doallo
2016	—	`conf`	Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark. Euro-Par Workshops Diego Teijeiro, Xoán C. Pardo, David R. Penas, Patricia González, Julio R. Banga, Ramón Doallo
2015	J	`jnl`	Enhanced parallel Differential Evolution algorithm for problems in computational systems biology. Appl. Soft Comput. David R. Penas, Julio R. Banga, Patricia González, Ramon Doallo
2015	Misc	`conf`	Parallel Metaheuristics in Computational Biology: An Asynchronous Cooperative Enhanced Scatter Search Method. ICCS David R. Penas, Patricia González, Jose A. Egea, Julio R. Banga, Ramon Doallo
2014	Misc	`conf`	A Parallel Differential Evolution Algorithm for Parameter Estimation in Dynamic Models of Biological Systems. PACBB David R. Penas, Julio R. Banga, Patricia González, Ramon Doallo
2012	—	`conf`	A Study of Semantic Proximity between Archetype Terms Based on SNOMED CT Relationships. ProHealth/KR4HC José Luis Iglesias Allones, David R. Penas, Maria Taboada, Diego Martínez Hernández, Serafín Tellado