David Posada

27 papers A 1Journal 20Unranked 6
YearRankTypeTitle / Venue / Authors
2022 — conf
Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data.
WIVACE
Davide Maspero, Fabrizio Angaroni, Lucrezia Patruno, Daniele Ramazzotti, David Posada, Alex Graudenzi
2022 J jnl
Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data.
Bioinform.
Mohammad Amin Edrisi, Monica V. Valecha, Sunkara B. V. Chowdary, Sergio Robledo, Huw A. Ogilvie, David Posada, Hamim Zafar, Luay Nakhleh
2018 J jnl
NGSphy: phylogenomic simulation of next-generation sequencing data.
Bioinform.
Merly Escalona, Sara Rocha, David Posada
2018 J jnl
RecPhyloXML: a format for reconciled gene trees.
Bioinform.
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
2016 J jnl
Adapting Reproducible Research Capabilities to Resilient Distributed Calculations.
Int. J. Grid High Perform. Comput.
Manuel Aurelio Rodriguez Pascual, Christos Kanellopoulos, Antonio J. Rubio-Montero, Diego Darriba, Ognjen Prnjat, David Posada, Rafael Mayo-García
2014 J jnl
High-performance computing selection of models of DNA substitution for multicore clusters.
Int. J. High Perform. Comput. Appl.
Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada
2013 J jnl
Protein evolution along phylogenetic histories under structurally constrained substitution models.
Bioinform.
Miguel Arenas, Helena G. Dos Santos, David Posada, Ugo Bastolla
2011 — conf
HPC selection of models of DNA substitution.
CMSB
Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada
2011 J jnl
ProtTest 3: fast selection of best-fit models of protein evolution.
Bioinform.
Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada
2010 J jnl
ALTER: program-oriented conversion of DNA and protein alignments.
Nucleic Acids Res.
Daniel Glez-Peña, Daniel Gómez-Blanco, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David Posada
2010 — conf
Accurate Selection of Models of Protein Evolution.
IWPACBB
Mateus Patricio, Federico Abascal, Rafael Zardoya, David Posada
2010 J jnl
Characterization of phylogenetic networks with NetTest.
BMC Bioinform.
Miguel Arenas, Mateus Patricio, David Posada, Gabriel Valiente
2010 — conf
Grid selection of models of nucleotide substitution.
HealthGrid
Marta Loureiro, Miguel Pan, Manuel Aurelio Rodriguez Pascual, David Posada, Rafael Mayo
2010 — conf
ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution.
Euro-Par Workshops
Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada
2010 J jnl
RDP3: a flexible and fast computer program for analyzing recombination.
Bioinform.
Darren P. Martin, Philippe Lemey, Martin Lott, Vincent Moulton, David Posada, Pierre Lefeuvre
2009 J jnl
An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1.
PLoS Comput. Biol.
Sergei L. Kosakovsky Pond, David Posada, Eric W. Stawiski, Colombe Chappey, Art F. Y. Poon, Gareth Hughes, Esther Fearnhill, Mike B. Gravenor, Andrew J. Leigh Brown, Simon D. W. Frost
2009 — conf
Automatic Prediction of the Genetic Code.
IWANN (2)
Mateus Patricio, Jaime Huerta-Cepas, Toni Gabaldón, Rafael Zardoya, David Posada
2007 J jnl
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography.
BMC Bioinform.
Miguel Arenas, David Posada
2006 J jnl
GARD: a genetic algorithm for recombination detection.
Bioinform.
Sergei L. Kosakovsky Pond, David Posada, Michael B. Gravenor, Christopher H. Woelk, Simon D. W. Frost
2006 J jnl
GenDecoder: genetic code prediction for metazoan mitochondria.
Nucleic Acids Res.
Federico Abascal, Rafael Zardoya, David Posada
2006 J jnl
ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online.
Nucleic Acids Res.
David Posada
2005 J jnl
ProtTest: selection of best-fit models of protein evolution.
Bioinform.
Federico Abascal, Rafael Zardoya, David Posada
2005 J jnl
RDP2: recombination detection and analysis from sequence alignments.
Bioinform.
Darren P. Martin, Carolyn Williamson, David Posada
2005 J jnl
TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.
Bioinform.
David Posada, Taylor J. Maxwell, Alan R. Templeton
2003 J jnl
Simulating haplotype blocks in the human genome.
Bioinform.
David Posada, Carsten Wiuf
2002 A conf
TCS: Estimating Gene Genealogies.
IPDPS
Mark J. Clement, Quinn Snell, Peter Walker, David Posada, Keith A. Crandall
1998 J jnl
MODELTEST: testing the model of DNA substitution.
Bioinform.
David Posada, Keith A. Crandall