David Murrugarra

15 papers Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
When Does Additional Information Improve Accuracy of RNA Secondary Structure Prediction?
J. Chem. Inf. Model.
Logan Rose, Luis Sanchez Giraldo, Duc Nguyen, Matthew Wheeler, David Murrugarra
2022 J jnl
An information theoretic approach for the inference of Boolean networks and functions from data: BoCSE.
Patterns
David Murrugarra, Alan Veliz-Cuba
2022 J jnl
Revealing the canalizing structure of Boolean functions: Algorithms and applications.
Autom.
Elena S. Dimitrova, Brandilyn Stigler, Claus Kadelka, David Murrugarra
2022 J jnl
Stability of Linear Boolean Networks.
CoRR
Karthik Chandrasekhar, Claus Kadelka, Reinhard C. Laubenbacher, David Murrugarra
2021 J jnl
Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies.
PLoS Comput. Biol.
David J. Wooten, Jorge Gómez Tejeda Zañudo, David Murrugarra, Austin M. Perry, Anna Dongari-Bagtzoglou, Reinhard C. Laubenbacher, Clarissa J. Nobile, Réka Albert
2021 J jnl
Quantifying the total effect of edge interventions in discrete multistate networks.
Autom.
David Murrugarra, Elena S. Dimitrova
2021 J jnl
Revealing the canalizing structure of Boolean functions: Algorithms and applications.
CoRR
Elena S. Dimitrova, Brandilyn Stigler, Claus Kadelka, David Murrugarra
2016 J jnl
Identification of control targets in Boolean molecular network models via computational algebra.
BMC Syst. Biol.
David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Reinhard C. Laubenbacher
2015 J jnl
Molecular network control through boolean canalization.
EURASIP J. Bioinform. Syst. Biol.
David Murrugarra, Elena S. Dimitrova
2014 — ch.
Algebraic Models and Their Use in Systems Biology.
Discrete and Topological Models in Molecular Biology
Reinhard C. Laubenbacher, Franziska Hinkelmann, David Murrugarra, Alan Veliz-Cuba
2014 J jnl
Structure and dynamics of acyclic networks.
Discret. Event Dyn. Syst.
Alan Veliz-Cuba, David Murrugarra, Reinhard C. Laubenbacher
2013 J jnl
Boolean nested canalizing functions: A comprehensive analysis.
Theor. Comput. Sci.
Yuan Li, John O. Adeyeye, David Murrugarra, Boris Aguilar, Reinhard C. Laubenbacher
2012 J jnl
Modeling stochasticity and variability in gene regulatory networks.
EURASIP J. Bioinform. Syst. Biol.
David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Seda Arat, Reinhard C. Laubenbacher
2011 — conf
Bifurcations in Boolean Networks.
Automata
Chris J. Kuhlman, Henning S. Mortveit, David Murrugarra, V. S. Anil Kumar
2010 J jnl
A Mathematical Framework for Agent Based Models of Complex Biological Networks
CoRR
Franziska Hinkelmann, David Murrugarra, Abdul Salam Jarrah, Reinhard C. Laubenbacher