David Mayerich

40 papers A 1B 2Journal 16Unranked 18

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Closed-Form GPU-Accelerated Tensor Voting with Refinement. ISBI Helya Goharbavang, Omar Baig, Guoning Chen, David Mayerich
2025	J	`jnl`	Segmentation and modeling of large-scale microvascular networks: a survey. Frontiers Bioinform. Helya Goharbavang, Artem T. Ashitkov, Athira Pillai, Joshua D. Wythe, Guoning Chen, David Mayerich
2025	—	`conf`	Segmentation of Microvascular Networks Embedded in Gigavoxel 3D Images Using RSF Level Sets with OpenVDB. ISBI Meher Niger, Wilna Moree, Maximillian Bluhm, Jason L. Eriksen, Guoning Chen, David Mayerich
2024	J	`jnl`	GPU-Accelerated RSF Level Set Evolution for Large-Scale Microvascular Segmentation. CoRR Meher Niger, Helya Goharbavang, Taeyong Ahn, Emily K. Alley, Joshua D. Wythe, Guoning Chen, David Mayerich
2024	J	`jnl`	Rapid hyperspectral photothermal mid-infrared spectroscopic imaging from sparse data for gynecologic cancer tissue subtyping. CoRR Reza Reihanisaransari, Chalapathi Charan Gajjela, Xinyu Wu, Ragib Ishrak, Sara Corvigno, Yanping Zhong, Jinsong Liu, Anil K. Sood, David Mayerich, Sebastian Berisha, Rohith K. Reddy
2024	J	`jnl`	sCWatter: Open source coupled wave scattering simulation for spectroscopy and microscopy. CoRR Ruijiao Sun, Rohith K. Reddy, David Mayerich
2022	B	`conf`	Adaptive Compressive Sampling for Mid-Infrared Spectroscopic Imaging. ICIP Mahsa Lotfollahi, Nguyen Tran, Chalapathi Gajjela, Sebastian Berisha, Zhu Han, David Mayerich, Rohith K. Reddy
2020	—	`conf`	Cellular/Vascular Reconstruction Using a Deep CNN for Semantic Image Preprocessing and Explicit Segmentation. MLMIR@MICCAI Leila Saadatifard, Aryan Mobiny, Pavel A. Govyadinov, Hien Van Nguyen, David Mayerich
2020	J	`jnl`	DVNet: A Memory-Efficient Three-Dimensional CNN for Large-Scale Neurovascular Reconstruction. CoRR Leila Saadatifard, Aryan Mobiny, Pavel A. Govyadinov, Hien Van Nguyen, David Mayerich
2020	J	`jnl`	Hyperspectral-Multispectral Image Fusion with Weighted LASSO. CoRR Nguyen Tran, Rupali Mankar, David Mayerich, Zhu Han
2020	—	`conf`	Segmenting Continuous but Sparsely-Labeled Structures in Super-Resolution Microscopy Using Perceptual Grouping. MICCAI (5) Jiabing Li, Camille Artur, Jason L. Eriksen, Badrinath Roysam, David Mayerich
2019	—	`conf`	Graph-Assisted Visualization of Microvascular Networks. IEEE VIS (Short Papers) Pavel A. Govyadinov, Tasha Womack, Jason L. Eriksen, David Mayerich, Guoning Chen
2019	J	`jnl`	Robust Tracing and Visualization of Heterogeneous Microvascular Networks. IEEE Trans. Vis. Comput. Graph. Pavel A. Govyadinov, Tasha Womack, Jason L. Eriksen, Guoning Chen, David Mayerich
2019	J	`jnl`	TIMING 2.0: high-throughput single-cell profiling of dynamic cell-cell interactions by time-lapse imaging microscopy in nanowell grids. Bioinform. Hengyang Lu, Jiabing Li, Melisa A. Martinez-Paniagua, Irfan N. Bandey, Amit Amritkar, Harjeet Singh, David Mayerich, Navin Varadarajan, Badrinath Roysam
2018	—	`conf`	Digital Staining of High-Resolution FTIR Spectroscopic Images. GlobalSIP Mahsa Lotfollahi, Davar Daeinejad, Sebastian Berisha, David Mayerich
2018	J	`jnl`	Three-Dimensional GPU-Accelerated Active Contours for Automated Localization of Cells in Large Images. CoRR Mahsa Lotfollahi, Sebastian Berisha, Leila Saadatifard, Laura Montier, Jokubas Ziburkus, David Mayerich
2017	—	`conf`	A dual-modality optical coherence tomography and selective plane illumination microscopy system for mouse embryonic imaging. EMBC Chen Wu, Shihao Ran, Henry Le, Manmohan Singh, Irina V. Larina, David Mayerich, Mary E. Dickinson, Kirill V. Larin
2017	—	`conf`	Phase retrieval based deconvolution algorithm in optical systems. GlobalSIP Shaohua Qin, Sebastian Berisha, David Mayerich, Zhu Han
2016	—	`conf`	Fast submicrometer-scale imaging of whole zebrafish using the knife-edge scanning microscope. EMBC Daniel E. Miller, Raj S. Shah, Wencong Zhang, Jaewook Yoo, Jaerock Kwon, David Mayerich, John Keyser, Louise C. Abbott, Yoonsuck Choe
2016	—	`conf`	Multimodal embryonic imaging using optical coherence tomography, selective plane illumination microscopy, and optical projection tomography. EMBC Manmohan Singh, Chen Wu, David Mayerich, Mary E. Dickinson, Irina V. Larina, Kirill V. Larin
2014	—	`ch.`	Connectome, Mouse. Encyclopedia of Computational Neuroscience Yoonsuck Choe, Jaerock Kwon, David Mayerich, Louise C. Abbott
2014	—	`ch.`	Reconstruction, Techniques, and Validation. Encyclopedia of Computational Neuroscience David Mayerich, Yoonsuck Choe, John Keyser
2013	J	`jnl`	Real-time interactive data mining for chemical imaging information: application to automated histopathology. BMC Bioinform. David Mayerich, Michael J. Walsh, Matthew Schulmerich, Rohit Bhargava
2012	J	`jnl`	NetMets: software for quantifying and visualizing errors in biological network segmentation. BMC Bioinform. David Mayerich, Christopher Björnsson, Jonothan Taylor, Badrinath Roysam
2012	—	`conf`	Optimizing the design of FT-IR spectroscopic imaging instruments to obtain increased spatial resolution of chemical species. ISBI Rohith K. Reddy, David Mayerich, Michael J. Walsh, Matthew Schulmerich, Paul Scott Carney, Rohit Bhargava
2012	—	`conf`	Volume visualization in serial electron microscopy using local variance. BioVis David Mayerich, John C. Hart
2011	—	`conf`	Automated cropping and artifact removal for knife-edge scanning microscopy. ISBI Jaerock Kwon, David Mayerich, Yoonsuck Choe
2011	—	`conf`	Fast cell detection in high-throughput imagery using GPU-accelerated machine learning. ISBI David Mayerich, Jaerock Kwon, Aaron Panchal, John Keyser, Yoonsuck Choe
2011	B	`conf`	Knife-edge scanning microscopy for connectomics research. IJCNN Yoonsuck Choe, David Mayerich, Jaerock Kwon, Daniel E. Miller, Ji Ryang Chung, Chul Sung, John Keyser, Louise C. Abbott
2011	—	`conf`	Metrics for comparing explicit representations of interconnected biological networks. BioVis David Mayerich, Christopher Björnsson, Jonothan Taylor, Badrinath Roysam
2011	J	`jnl`	Multiscale Exploration of Mouse Brain Microstructures Using the Knife-Edge Scanning Microscope Brain Atlas. Frontiers Neuroinformatics Ji Ryang Chung, Chul Sung, David Mayerich, Jaerock Kwon, Daniel E. Miller, Todd Huffman, John Keyser, Louise C. Abbott, Yoonsuck Choe
2010	—	`—`	Imaging and Computational Methods for Exploring Sub-cellular Anatomy. David Mayerich
2009	J	`jnl`	Hardware Accelerated Segmentation of Complex Volumetric Filament Networks. IEEE Trans. Vis. Comput. Graph. David Mayerich, John Keyser
2008	—	`conf`	Automated lateral sectioning for Knife-Edge Scanning Microscopy. ISBI Jaerock Kwon, David Mayerich, Yoonsuck Choe, Bruce H. McCormick
2008	—	`conf`	Filament tracking and encoding for complex biological networks. Symposium on Solid and Physical Modeling David Mayerich, John Keyser
2008	J	`jnl`	Visualization of Cellular and Microvascular Relationships. IEEE Trans. Vis. Comput. Graph. David Mayerich, Louise C. Abbott, John Keyser
2007	—	`conf`	Noise and Artifact Removal in Knife-Edge Scanning Microscopy. ISBI David Mayerich, Bruce H. McCormick, John Keyser
2006	J	`jnl`	Visualization of Fibrous and Thread-like Data. IEEE Trans. Vis. Comput. Graph. Zeki Melek, David Mayerich, Cem Yuksel, John Keyser
2004	A	`conf`	Compression, Segmentation, and Modeling of Large-Scale Filamentary Volumetric Data. IEEE Visualization Bruce H. McCormick, Purna Doddapaneni, David Mayerich, Zeki Melek, John Keyser
2004	J	`jnl`	Construction of anatomically correct models of mouse brain networks. Neurocomputing Bruce H. McCormick, Wonryull Koh, Yoonsuck Choe, Louise C. Abbott, John Keyser, David Mayerich, Zeki Melek, Purna Doddapaneni