David M. Reif

19 papers A 2B 2C 3Misc 1Journal 9Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Integrating qHTS and QSAR Models to Identify Safe GPCR-Targeted Compounds: A Focus on hERG-Dependent Cardiotoxicity.
J. Chem. Inf. Model.
Xi Luo, Jinghua Zhao, Srilatha Sakamuru, Menghang Xia, Tuan Xu, Jameson Travers, Carleen Klumpp-Thomas, Hu Zhu, Matthew D. Hall, Stephen S. Ferguson, David M. Reif, Ruili Huang
2024 J jnl
Deep autoencoder-based behavioral pattern recognition outperforms standard statistical methods in high-dimensional zebrafish studies.
PLoS Comput. Biol.
Adrian J. Green, Lisa Truong, Preethi Thunga, Connor Leong, Melody Hancock, Robyn L. Tanguay, David M. Reif
2021 J jnl
Leveraging high-throughput screening data, deep neural networks, and conditional generative adversarial networks to advance predictive toxicology.
PLoS Comput. Biol.
Adrian J. Green, Martin J. Mohlenkamp, Jhuma Das, Meenal Chaudhari, Lisa Truong, Robyn L. Tanguay, David M. Reif
2018 J jnl
Characterizing the effects of missing data and evaluating imputation methods for chemical prioritization applications using ToxPi.
BioData Min.
Kimberly To, Rebecca C. Fry, David M. Reif
2018 J jnl
ToxPi Graphical User Interface 2.0: Dynamic exploration, visualization, and sharing of integrated data models.
BMC Bioinform.
Skylar W. Marvel, Kimberly To, Fabian A. Grimm, Fred A. Wright, Ivan Rusyn, David M. Reif
2013 J jnl
A Computational Model Predicting Disruption of Blood Vessel Development.
PLoS Comput. Biol.
Nicole C. Kleinstreuer, David Dix, Michael Rountree, Nancy Baker, Nisha Sipes, David M. Reif, Richard Spencer, Thomas Knudsen
2013 J jnl
Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes.
BMC Syst. Biol.
ClarLynda R. Williams-DeVane, David M. Reif, Elaine Cohen Hubal, Pierre R. Bushel, Edward E. Hudgens, Jane E. Gallagher, Stephen W. Edwards
2013 J jnl
ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence.
Bioinform.
David M. Reif, Myroslav Sypa, Eric F. Lock, Fred A. Wright, Ander Wilson, Tommy Cathey, Richard S. Judson, Ivan Rusyn
2012 — conf
A comparison of GE optimized neural networks and decision trees.
GECCO (Companion)
Kristopher Hoover, Rachel Marceau, Tyndall Harris, David M. Reif, Alison A. Motsinger-Reif
2011 — conf
Optimization of grammatical evolution decision trees.
GECCO (Companion)
Kristopher Hoover, Rachel Marceau, Tyndall Harris, Nicholas E. Hardison, David M. Reif, Alison A. Motsinger-Reif
2008 A conf
A balanced accuracy fitness function leads to robust analysis using grammatical evolution neural networks in the case of class imbalance.
GECCO
Nicholas E. Hardison, Theresa J. Fanelli, Scott M. Dudek, David M. Reif, Marylyn D. Ritchie, Alison A. Motsinger-Reif
2007 J jnl
Evaporative cooling feature selection for genotypic data involving interactions.
Bioinform.
Brett A. McKinney, David M. Reif, Bill C. White, James E. Crowe Jr., Jason H. Moore
2007 C conf
Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks.
CIBCB
Alison A. Motsinger, David M. Reif, Theresa J. Fanelli, Anna C. Davis, Marylyn D. Ritchie
2006 C conf
Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data Types.
CIBCB
David M. Reif, Alison A. Motsinger, Brett A. McKinney, James E. Crowe Jr., Jason H. Moore
2006 C conf
Understanding the Evolutionary Process of Grammatical Evolution Neural Networks for Feature Selection in Genetic Epidemiology.
CIBCB
Alison A. Motsinger, David M. Reif, Scott M. Dudek, Marylyn D. Ritchie
2005 B conf
A statistical comparison of grammatical evolution strategies in the domain of human genetics.
Congress on Evolutionary Computation
Bill C. White, David M. Reif, Joshua C. Gilbert, Jason H. Moore
2005 B conf
A statistical comparison of grammatical evolution strategies in the domain of human genetics.
Congress on Evolutionary Computation
Bill C. White, David M. Reif, Joshua C. Gilbert, Jason H. Moore
2005 Misc conf
Exploratory Visual Analysis of Pharmacogenomic Results.
Pacific Symposium on Biocomputing
David M. Reif, Scott M. Dudek, Christian M. Shaffer, Janey Wang, Jason H. Moore
2003 A conf
Complex Function Sets Improve Symbolic Discriminant Analysis of Microarray Data.
GECCO
David M. Reif, Bill C. White, Nancy Olsen, Thomas M. Aune, Jason H. Moore