David M. Kristensen

13 papers B 1Misc 1Journal 11
YearRankTypeTitle / Venue / Authors
2019 J jnl
Microbial genome analysis: the COG approach.
Briefings Bioinform.
Michael Y. Galperin, David M. Kristensen, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin
2017 J jnl
ATGC database and ATGC-COGs: an updated resource for micro- and macro-evolutionary studies of prokaryotic genomes and protein family annotation.
Nucleic Acids Res.
David M. Kristensen, Yuri I. Wolf, Eugene V. Koonin
2017 J jnl
Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation.
Nucleic Acids Res.
Ana Laura Grazziotin, Eugene V. Koonin, David M. Kristensen
2015 J jnl
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea.
BMC Bioinform.
David M. Kristensen, Usman Saeed, Dmitrij Frishman, Eugene V. Koonin
2011 J jnl
Computational methods for Gene Orthology inference.
Briefings Bioinform.
David M. Kristensen, Yuri I. Wolf, Arcady R. Mushegian, Eugene V. Koonin
2010 J jnl
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches.
Bioinform.
David M. Kristensen, Lavanya Kannan, Michael K. Coleman, Yuri I. Wolf, Alexander Sorokin, Eugene V. Koonin, Arcady R. Mushegian
2009 J jnl
Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates.
Bioinform.
R. Matthew Ward, Eric Venner, Bryce Daines, Stephen Murray, Serkan Erdin, David M. Kristensen, Olivier Lichtarge
2008 J jnl
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.
BMC Bioinform.
David M. Kristensen, R. Matthew Ward, Andreas Martin Lisewski, Serkan Erdin, Brian Y. Chen, Viacheslav Fofanov, Marek Kimmel, Lydia E. Kavraki, Olivier Lichtarge
2007 J jnl
Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction.
J. Bioinform. Comput. Biol.
Brian Y. Chen, Drew H. Bryant, Viacheslav Fofanov, David M. Kristensen, Amanda E. Cruess, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
2007 J jnl
The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs.
J. Comput. Biol.
Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
2006 J jnl
ET viewer: an application for predicting and visualizing functional sites in protein structures.
Bioinform.
Daniel H. Morgan, David M. Kristensen, David Mittelman, Olivier Lichtarge
2006 B conf
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.
RECOMB
Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
2005 Misc conf
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs.
Pacific Symposium on Biocomputing
Brian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki