David M. Herrington

14 papers B 1Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution.
Bioinform.
Chiung-Ting Wu, Dongping Du, Lulu Chen, Rujia Dai, Chunyu Liu, Guoqiang Yu, Saurabh Bhardwaj, Sarah J. Parker, Zhen Zhang, Robert Clarke, David M. Herrington, Yue Wang
2024 J jnl
DDN3.0: determining significant rewiring of biological network structure with differential dependency networks.
Bioinform.
Yi Fu, Yingzhou Lu, Yizhi Wang, Bai Zhang, Zhen Zhang, Guoqiang Yu, Chunyu Liu, Robert Clarke, David M. Herrington, Yue Wang
2023 J jnl
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization.
CoRR
Yingzhou Lu, Minjie Shen, Yue Zhao, Chenhao Li, Fan Meng, Xiao Wang, David M. Herrington, Yue Wang, Tim Fu, Capucine Van Rechem
2022 J jnl
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.
Bioinform.
Lulu Chen, Chiung-Ting Wu, Chia-Hsiang Lin, Rujia Dai, Chunyu Liu, Robert Clarke, Guoqiang Yu, Jennifer E. Van Eyk, David M. Herrington, Yue Wang
2021 J jnl
Machine intelligence enabled radiomics.
Nat. Mach. Intell.
Yue Wang, David M. Herrington
2020 J jnl
Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection.
Bioinform.
Chiung-Ting Wu, Yizhi Wang, Yinxue Wang, Timothy M. D. Ebbels, Ibrahim Karaman, Gonçalo Graça, Rui Pinto, David M. Herrington, Yue Wang, Guoqiang Yu
2020 J jnl
debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues.
Bioinform.
Lulu Chen, Chiung-Ting Wu, Niya Wang, David M. Herrington, Robert Clarke, Yue Wang
2015 J jnl
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Bioinform.
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
2014 J jnl
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
BMC Syst. Biol.
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
2012 J jnl
An Overview of Population Genetic Data Simulation.
J. Comput. Biol.
Xiguo Yuan, David J. Miller, Junying Zhang, David M. Herrington, Yue Wang
2009 J jnl
An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions.
Bioinform.
David J. Miller, Yanxin Zhang, Guoqiang Yu, Yongmei Liu, Li Chen, Carl D. Langefeld, David M. Herrington, Yue Joseph Wang
2002 — conf
Estimation of complex ultrasonic medium responses by deconvolution.
ISBI
Zhiping Mu, Robert J. Plemmons, David M. Herrington, Peter Santago II
2000 J jnl
Ultrasound Measurement of Brachial Flow-mediated Vasodilator Response.
IEEE Trans. Medical Imaging
Liexiang Fan, Peter Santago II, Huai Jiang, David M. Herrington
1999 B conf
3D ultrasound image segmentation using multiple incomplete feature sets.
Image Processing
Liexiang Fan, David M. Herrington, Peter Santago